Search results for the GEO ID: GSE25300 |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM622279 | GPL570 |
|
Sample 1 - MDS at diagnosis
|
stored, frozen Bone Marrow cells
|
disease state: MDS
tissue: Bone Marrow
individual: patient 1
|
Gene expression data from myelodysplastic sindrome samples at diagnosis
|
Sample_geo_accession | GSM622279
| Sample_status | Public on Nov 30 2012
| Sample_submission_date | Nov 12 2010
| Sample_last_update_date | Nov 30 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | stored, frozen Bone Marrow
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA purification using selective binding columns
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 11 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450dx.
| Sample_scan_protocol | GeneChips were scanned using the Scan GCS3000dx
| Sample_data_processing | MAS 5.0
| Sample_platform_id | GPL570
| Sample_contact_name | silvia ,,bresolin
| Sample_contact_email | silvia.bresolin@unipd.it
| Sample_contact_phone | +390498211453
| Sample_contact_laboratory | SSD ematologia-clinica sperimentale
| Sample_contact_department | department of pediatrics
| Sample_contact_institute | università di padova
| Sample_contact_address | via giustiniani 3
| Sample_contact_city | padova
| Sample_contact_state | padova
| Sample_contact_zip/postal_code | 35128
| Sample_contact_country | Italy
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM622nnn/GSM622279/suppl/GSM622279_M1.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM622nnn/GSM622279/suppl/GSM622279_M1.CHP.gz
| Sample_series_id | GSE25300
| Sample_data_row_count | 54675
| |
|
GSM622280 | GPL570 |
|
Sample 2 -AML evolution of sample 1
|
stored, frozen Bone Marrow cells
|
disease state: AML
tissue: Bone Marrow
individual: patient 1
|
Gene expression data from acute myeloid leukemia samples at evolution post MDS
|
Sample_geo_accession | GSM622280
| Sample_status | Public on Nov 30 2012
| Sample_submission_date | Nov 12 2010
| Sample_last_update_date | Nov 30 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | stored, frozen Bone Marrow
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA purification using selective binding columns
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 11 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450dx.
| Sample_scan_protocol | GeneChips were scanned using the Scan GCS3000dx
| Sample_data_processing | MAS 5.0
| Sample_platform_id | GPL570
| Sample_contact_name | silvia ,,bresolin
| Sample_contact_email | silvia.bresolin@unipd.it
| Sample_contact_phone | +390498211453
| Sample_contact_laboratory | SSD ematologia-clinica sperimentale
| Sample_contact_department | department of pediatrics
| Sample_contact_institute | università di padova
| Sample_contact_address | via giustiniani 3
| Sample_contact_city | padova
| Sample_contact_state | padova
| Sample_contact_zip/postal_code | 35128
| Sample_contact_country | Italy
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM622nnn/GSM622280/suppl/GSM622280_M2.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM622nnn/GSM622280/suppl/GSM622280_M2.CHP.gz
| Sample_series_id | GSE25300
| Sample_data_row_count | 54675
| |
|
GSM622281 | GPL570 |
|
Sample 3 - MDs at diagnosis
|
stored, frozen Bone Marrow cells
|
disease state: MDS
tissue: Bone Marrow
individual: patient 2
|
Gene expression data from myelodysplastic sindrome samples at diagnosis
|
Sample_geo_accession | GSM622281
| Sample_status | Public on Nov 30 2012
| Sample_submission_date | Nov 12 2010
| Sample_last_update_date | Nov 30 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | stored, frozen Bone Marrow
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA purification using selective binding columns
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 11 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450dx.
| Sample_scan_protocol | GeneChips were scanned using the Scan GCS3000dx
| Sample_data_processing | MAS 5.0
| Sample_platform_id | GPL570
| Sample_contact_name | silvia ,,bresolin
| Sample_contact_email | silvia.bresolin@unipd.it
| Sample_contact_phone | +390498211453
| Sample_contact_laboratory | SSD ematologia-clinica sperimentale
| Sample_contact_department | department of pediatrics
| Sample_contact_institute | università di padova
| Sample_contact_address | via giustiniani 3
| Sample_contact_city | padova
| Sample_contact_state | padova
| Sample_contact_zip/postal_code | 35128
| Sample_contact_country | Italy
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM622nnn/GSM622281/suppl/GSM622281_M3.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM622nnn/GSM622281/suppl/GSM622281_M3.CHP.gz
| Sample_series_id | GSE25300
| Sample_data_row_count | 54675
| |
|
GSM622282 | GPL570 |
|
Sample 4 -AML evolution of sample 3
|
stored, frozen Bone Marrow cells
|
disease state: AML
tissue: Bone Marrow
individual: patient 2
|
Gene expression data from acute myeloid leukemia samples at evolution post MDS
|
Sample_geo_accession | GSM622282
| Sample_status | Public on Nov 30 2012
| Sample_submission_date | Nov 12 2010
| Sample_last_update_date | Nov 30 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | stored, frozen Bone Marrow
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA purification using selective binding columns
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 11 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450dx.
| Sample_scan_protocol | GeneChips were scanned using the Scan GCS3000dx
| Sample_data_processing | MAS 5.0
| Sample_platform_id | GPL570
| Sample_contact_name | silvia ,,bresolin
| Sample_contact_email | silvia.bresolin@unipd.it
| Sample_contact_phone | +390498211453
| Sample_contact_laboratory | SSD ematologia-clinica sperimentale
| Sample_contact_department | department of pediatrics
| Sample_contact_institute | università di padova
| Sample_contact_address | via giustiniani 3
| Sample_contact_city | padova
| Sample_contact_state | padova
| Sample_contact_zip/postal_code | 35128
| Sample_contact_country | Italy
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM622nnn/GSM622282/suppl/GSM622282_M4.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM622nnn/GSM622282/suppl/GSM622282_M4.CHP.gz
| Sample_series_id | GSE25300
| Sample_data_row_count | 54675
| |
|
GSM622283 | GPL570 |
|
Sample 5 - MDS at diagnosis
|
stored, frozen Bone Marrow cells
|
disease state: MDS
tissue: Bone Marrow
individual: patient 3
|
Gene expression data from myelodysplastic sindrome samples at diagnosis
|
Sample_geo_accession | GSM622283
| Sample_status | Public on Nov 30 2012
| Sample_submission_date | Nov 12 2010
| Sample_last_update_date | Nov 30 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | stored, frozen Bone Marrow
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA purification using selective binding columns
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 11 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450dx.
| Sample_scan_protocol | GeneChips were scanned using the Scan GCS3000dx
| Sample_data_processing | MAS 5.0
| Sample_platform_id | GPL570
| Sample_contact_name | silvia ,,bresolin
| Sample_contact_email | silvia.bresolin@unipd.it
| Sample_contact_phone | +390498211453
| Sample_contact_laboratory | SSD ematologia-clinica sperimentale
| Sample_contact_department | department of pediatrics
| Sample_contact_institute | università di padova
| Sample_contact_address | via giustiniani 3
| Sample_contact_city | padova
| Sample_contact_state | padova
| Sample_contact_zip/postal_code | 35128
| Sample_contact_country | Italy
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM622nnn/GSM622283/suppl/GSM622283_M5.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM622nnn/GSM622283/suppl/GSM622283_M5.CHP.gz
| Sample_series_id | GSE25300
| Sample_data_row_count | 54675
| |
|
GSM622284 | GPL570 |
|
Sample 6 - AML evolution of sample 5
|
stored, frozen Bone Marrow cells
|
disease state: AML
tissue: Bone Marrow
individual: patient 3
|
Gene expression data from acute myeloid leukemia samples at evolution post MDS
|
Sample_geo_accession | GSM622284
| Sample_status | Public on Nov 30 2012
| Sample_submission_date | Nov 12 2010
| Sample_last_update_date | Nov 30 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | stored, frozen Bone Marrow
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA purification using selective binding columns
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 11 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450dx.
| Sample_scan_protocol | GeneChips were scanned using the Scan GCS3000dx
| Sample_data_processing | MAS 5.0
| Sample_platform_id | GPL570
| Sample_contact_name | silvia ,,bresolin
| Sample_contact_email | silvia.bresolin@unipd.it
| Sample_contact_phone | +390498211453
| Sample_contact_laboratory | SSD ematologia-clinica sperimentale
| Sample_contact_department | department of pediatrics
| Sample_contact_institute | università di padova
| Sample_contact_address | via giustiniani 3
| Sample_contact_city | padova
| Sample_contact_state | padova
| Sample_contact_zip/postal_code | 35128
| Sample_contact_country | Italy
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM622nnn/GSM622284/suppl/GSM622284_M6.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM622nnn/GSM622284/suppl/GSM622284_M6.CHP.gz
| Sample_series_id | GSE25300
| Sample_data_row_count | 54675
| |
|
GSM622285 | GPL570 |
|
Sample 7 - MDS at diagnosis
|
stored, frozen Bone Marrow cells
|
disease state: MDS
tissue: Bone Marrow
individual: patient 4
|
Gene expression data from myelodysplastic sindrome samples at diagnosis
|
Sample_geo_accession | GSM622285
| Sample_status | Public on Nov 30 2012
| Sample_submission_date | Nov 12 2010
| Sample_last_update_date | Nov 30 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | stored, frozen Bone Marrow
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA purification using selective binding columns
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 11 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450dx.
| Sample_scan_protocol | GeneChips were scanned using the Scan GCS3000dx
| Sample_data_processing | MAS 5.0
| Sample_platform_id | GPL570
| Sample_contact_name | silvia ,,bresolin
| Sample_contact_email | silvia.bresolin@unipd.it
| Sample_contact_phone | +390498211453
| Sample_contact_laboratory | SSD ematologia-clinica sperimentale
| Sample_contact_department | department of pediatrics
| Sample_contact_institute | università di padova
| Sample_contact_address | via giustiniani 3
| Sample_contact_city | padova
| Sample_contact_state | padova
| Sample_contact_zip/postal_code | 35128
| Sample_contact_country | Italy
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM622nnn/GSM622285/suppl/GSM622285_M14.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM622nnn/GSM622285/suppl/GSM622285_M14.CHP.gz
| Sample_series_id | GSE25300
| Sample_data_row_count | 54675
| |
|
GSM622286 | GPL570 |
|
Sample 8 - AML evolution of sample 7
|
stored, frozen Bone Marrow cells
|
disease state: AML
tissue: Bone Marrow
individual: patient 4
|
Gene expression data from acute myeloid leukemia samples at evolution post MDS
|
Sample_geo_accession | GSM622286
| Sample_status | Public on Nov 30 2012
| Sample_submission_date | Nov 12 2010
| Sample_last_update_date | Nov 30 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | stored, frozen Bone Marrow
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA purification using selective binding columns
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 11 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450dx.
| Sample_scan_protocol | GeneChips were scanned using the Scan GCS3000dx
| Sample_data_processing | MAS 5.0
| Sample_platform_id | GPL570
| Sample_contact_name | silvia ,,bresolin
| Sample_contact_email | silvia.bresolin@unipd.it
| Sample_contact_phone | +390498211453
| Sample_contact_laboratory | SSD ematologia-clinica sperimentale
| Sample_contact_department | department of pediatrics
| Sample_contact_institute | università di padova
| Sample_contact_address | via giustiniani 3
| Sample_contact_city | padova
| Sample_contact_state | padova
| Sample_contact_zip/postal_code | 35128
| Sample_contact_country | Italy
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM622nnn/GSM622286/suppl/GSM622286_M15.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM622nnn/GSM622286/suppl/GSM622286_M15.CHP.gz
| Sample_series_id | GSE25300
| Sample_data_row_count | 54675
| |
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