Search results for the GEO ID: GSE25414  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM624034 | GPL570 |
|
Sample T12
|
Human blood sample
|
sample id: T12
tissue: blood
age: 76
gender: Female
rs7956957 genotype: GG
|
Gene expression data from human blood samples
|
| Sample_geo_accession | GSM624034
| | Sample_status | Public on Nov 17 2010
| | Sample_submission_date | Nov 16 2010
| | Sample_last_update_date | Nov 17 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | EDTA tubes were centrifuged at 3500rpm for 15 min to obtain the white blood cell fraction and the samples were stored at -80ºC until RNA isolation.
| | Sample_growth_protocol_ch1 | Blood samples from 12 sujects were obtained.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from fresh peripheral blood mononuclear cells using a RiboPureTM -Blood kit from Ambion (Ambion, Woodward st. Austin, USA).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Samples were amplified using Two Cycle cDNA Synthesis Affymetrix kit.
| | Sample_label_protocol_ch1 | Samples were chemically fragmented and biotinylated using the IVT Labelling Kit (Affymetrix)
| | Sample_hyb_protocol | cRNA was hybridizated in Human Genome U133 Plus 2.0 Affymetrix microarrays.
| | Sample_scan_protocol | Microarrays were scanned in Affymetrix Genechip Scanner 3000 7G.
| | Sample_data_processing | Chips were processed on an Affymetrix GeneChip Fluidics Station 450. Background adjustment by Robust Multi-Array (RMA) algorithm was applied to probes intensities. Raw probes gene level expression were summarized from the corrected intensities and then quantile normalized. Log2 RMA signal estimates were obtained using R-2.8 and Bioconductor 2.3 Packages
| | Sample_platform_id | GPL570
| | Sample_contact_name | Sophie,,Domingues
| | Sample_contact_email | sophiedomingues@yahoo.fr
| | Sample_contact_phone | +34 934894029
| | Sample_contact_fax | +34 934894102
| | Sample_contact_laboratory | Neurovascular Research Laboratory
| | Sample_contact_department | Department of Neurology
| | Sample_contact_institute | Institut de Recerca Hospital Vall d’Hebron
| | Sample_contact_address | Pg Vall d’Hebron 119-129
| | Sample_contact_city | Barcelona
| | Sample_contact_zip/postal_code | 08035
| | Sample_contact_country | Spain
| | Sample_contact_web_link | http://www.lin-bcn.com/
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM624nnn/GSM624034/suppl/GSM624034_T12.CEL.gz
| | Sample_series_id | GSE25414
| | Sample_data_row_count | 54675
| | |
|
GSM624035 | GPL570 |
|
Sample T35
|
Human blood sample
|
sample id: T35
tissue: blood
age: 79
gender: Male
rs7956957 genotype: CG
|
Gene expression data from human blood samples
|
| Sample_geo_accession | GSM624035
| | Sample_status | Public on Nov 17 2010
| | Sample_submission_date | Nov 16 2010
| | Sample_last_update_date | Nov 17 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | EDTA tubes were centrifuged at 3500rpm for 15 min to obtain the white blood cell fraction and the samples were stored at -80ºC until RNA isolation.
| | Sample_growth_protocol_ch1 | Blood samples from 12 sujects were obtained.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from fresh peripheral blood mononuclear cells using a RiboPureTM -Blood kit from Ambion (Ambion, Woodward st. Austin, USA).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Samples were amplified using Two Cycle cDNA Synthesis Affymetrix kit.
| | Sample_label_protocol_ch1 | Samples were chemically fragmented and biotinylated using the IVT Labelling Kit (Affymetrix)
| | Sample_hyb_protocol | cRNA was hybridizated in Human Genome U133 Plus 2.0 Affymetrix microarrays.
| | Sample_scan_protocol | Microarrays were scanned in Affymetrix Genechip Scanner 3000 7G.
| | Sample_data_processing | Chips were processed on an Affymetrix GeneChip Fluidics Station 450. Background adjustment by Robust Multi-Array (RMA) algorithm was applied to probes intensities. Raw probes gene level expression were summarized from the corrected intensities and then quantile normalized. Log2 RMA signal estimates were obtained using R-2.8 and Bioconductor 2.3 Packages
| | Sample_platform_id | GPL570
| | Sample_contact_name | Sophie,,Domingues
| | Sample_contact_email | sophiedomingues@yahoo.fr
| | Sample_contact_phone | +34 934894029
| | Sample_contact_fax | +34 934894102
| | Sample_contact_laboratory | Neurovascular Research Laboratory
| | Sample_contact_department | Department of Neurology
| | Sample_contact_institute | Institut de Recerca Hospital Vall d’Hebron
| | Sample_contact_address | Pg Vall d’Hebron 119-129
| | Sample_contact_city | Barcelona
| | Sample_contact_zip/postal_code | 08035
| | Sample_contact_country | Spain
| | Sample_contact_web_link | http://www.lin-bcn.com/
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM624nnn/GSM624035/suppl/GSM624035_T35.CEL.gz
| | Sample_series_id | GSE25414
| | Sample_data_row_count | 54675
| | |
|
GSM624036 | GPL570 |
|
Sample T48
|
Human blood sample
|
sample id: T48
tissue: blood
age: 73
gender: Male
rs7956957 genotype: GG
|
Gene expression data from human blood samples
|
| Sample_geo_accession | GSM624036
| | Sample_status | Public on Nov 17 2010
| | Sample_submission_date | Nov 16 2010
| | Sample_last_update_date | Nov 17 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | EDTA tubes were centrifuged at 3500rpm for 15 min to obtain the white blood cell fraction and the samples were stored at -80ºC until RNA isolation.
| | Sample_growth_protocol_ch1 | Blood samples from 12 sujects were obtained.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from fresh peripheral blood mononuclear cells using a RiboPureTM -Blood kit from Ambion (Ambion, Woodward st. Austin, USA).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Samples were amplified using Two Cycle cDNA Synthesis Affymetrix kit.
| | Sample_label_protocol_ch1 | Samples were chemically fragmented and biotinylated using the IVT Labelling Kit (Affymetrix)
| | Sample_hyb_protocol | cRNA was hybridizated in Human Genome U133 Plus 2.0 Affymetrix microarrays.
| | Sample_scan_protocol | Microarrays were scanned in Affymetrix Genechip Scanner 3000 7G.
| | Sample_data_processing | Chips were processed on an Affymetrix GeneChip Fluidics Station 450. Background adjustment by Robust Multi-Array (RMA) algorithm was applied to probes intensities. Raw probes gene level expression were summarized from the corrected intensities and then quantile normalized. Log2 RMA signal estimates were obtained using R-2.8 and Bioconductor 2.3 Packages
| | Sample_platform_id | GPL570
| | Sample_contact_name | Sophie,,Domingues
| | Sample_contact_email | sophiedomingues@yahoo.fr
| | Sample_contact_phone | +34 934894029
| | Sample_contact_fax | +34 934894102
| | Sample_contact_laboratory | Neurovascular Research Laboratory
| | Sample_contact_department | Department of Neurology
| | Sample_contact_institute | Institut de Recerca Hospital Vall d’Hebron
| | Sample_contact_address | Pg Vall d’Hebron 119-129
| | Sample_contact_city | Barcelona
| | Sample_contact_zip/postal_code | 08035
| | Sample_contact_country | Spain
| | Sample_contact_web_link | http://www.lin-bcn.com/
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM624nnn/GSM624036/suppl/GSM624036_T48.CEL.gz
| | Sample_series_id | GSE25414
| | Sample_data_row_count | 54675
| | |
|
GSM624037 | GPL570 |
|
Sample R179
|
Human blood sample
|
sample id: R179
tissue: blood
age: 76
gender: Male
rs7956957 genotype: CG
|
Gene expression data from human blood samples
|
| Sample_geo_accession | GSM624037
| | Sample_status | Public on Nov 17 2010
| | Sample_submission_date | Nov 16 2010
| | Sample_last_update_date | Nov 17 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | EDTA tubes were centrifuged at 3500rpm for 15 min to obtain the white blood cell fraction and the samples were stored at -80ºC until RNA isolation.
| | Sample_growth_protocol_ch1 | Blood samples from 12 sujects were obtained.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from fresh peripheral blood mononuclear cells using a RiboPureTM -Blood kit from Ambion (Ambion, Woodward st. Austin, USA).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Samples were amplified using Two Cycle cDNA Synthesis Affymetrix kit.
| | Sample_label_protocol_ch1 | Samples were chemically fragmented and biotinylated using the IVT Labelling Kit (Affymetrix)
| | Sample_hyb_protocol | cRNA was hybridizated in Human Genome U133 Plus 2.0 Affymetrix microarrays.
| | Sample_scan_protocol | Microarrays were scanned in Affymetrix Genechip Scanner 3000 7G.
| | Sample_data_processing | Chips were processed on an Affymetrix GeneChip Fluidics Station 450. Background adjustment by Robust Multi-Array (RMA) algorithm was applied to probes intensities. Raw probes gene level expression were summarized from the corrected intensities and then quantile normalized. Log2 RMA signal estimates were obtained using R-2.8 and Bioconductor 2.3 Packages
| | Sample_platform_id | GPL570
| | Sample_contact_name | Sophie,,Domingues
| | Sample_contact_email | sophiedomingues@yahoo.fr
| | Sample_contact_phone | +34 934894029
| | Sample_contact_fax | +34 934894102
| | Sample_contact_laboratory | Neurovascular Research Laboratory
| | Sample_contact_department | Department of Neurology
| | Sample_contact_institute | Institut de Recerca Hospital Vall d’Hebron
| | Sample_contact_address | Pg Vall d’Hebron 119-129
| | Sample_contact_city | Barcelona
| | Sample_contact_zip/postal_code | 08035
| | Sample_contact_country | Spain
| | Sample_contact_web_link | http://www.lin-bcn.com/
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM624nnn/GSM624037/suppl/GSM624037_R179.CEL.gz
| | Sample_series_id | GSE25414
| | Sample_data_row_count | 54675
| | |
|
GSM624038 | GPL570 |
|
Sample T17
|
Human blood sample
|
sample id: T17
tissue: blood
age: 50
gender: Female
rs7956957 genotype: GG
|
Gene expression data from human blood samples
|
| Sample_geo_accession | GSM624038
| | Sample_status | Public on Nov 17 2010
| | Sample_submission_date | Nov 16 2010
| | Sample_last_update_date | Nov 17 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | EDTA tubes were centrifuged at 3500rpm for 15 min to obtain the white blood cell fraction and the samples were stored at -80ºC until RNA isolation.
| | Sample_growth_protocol_ch1 | Blood samples from 12 sujects were obtained.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from fresh peripheral blood mononuclear cells using a RiboPureTM -Blood kit from Ambion (Ambion, Woodward st. Austin, USA).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Samples were amplified using Two Cycle cDNA Synthesis Affymetrix kit.
| | Sample_label_protocol_ch1 | Samples were chemically fragmented and biotinylated using the IVT Labelling Kit (Affymetrix)
| | Sample_hyb_protocol | cRNA was hybridizated in Human Genome U133 Plus 2.0 Affymetrix microarrays.
| | Sample_scan_protocol | Microarrays were scanned in Affymetrix Genechip Scanner 3000 7G.
| | Sample_data_processing | Chips were processed on an Affymetrix GeneChip Fluidics Station 450. Background adjustment by Robust Multi-Array (RMA) algorithm was applied to probes intensities. Raw probes gene level expression were summarized from the corrected intensities and then quantile normalized. Log2 RMA signal estimates were obtained using R-2.8 and Bioconductor 2.3 Packages
| | Sample_platform_id | GPL570
| | Sample_contact_name | Sophie,,Domingues
| | Sample_contact_email | sophiedomingues@yahoo.fr
| | Sample_contact_phone | +34 934894029
| | Sample_contact_fax | +34 934894102
| | Sample_contact_laboratory | Neurovascular Research Laboratory
| | Sample_contact_department | Department of Neurology
| | Sample_contact_institute | Institut de Recerca Hospital Vall d’Hebron
| | Sample_contact_address | Pg Vall d’Hebron 119-129
| | Sample_contact_city | Barcelona
| | Sample_contact_zip/postal_code | 08035
| | Sample_contact_country | Spain
| | Sample_contact_web_link | http://www.lin-bcn.com/
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM624nnn/GSM624038/suppl/GSM624038_T17.CEL.gz
| | Sample_series_id | GSE25414
| | Sample_data_row_count | 54675
| | |
|
GSM624039 | GPL570 |
|
Sample T29
|
Human blood sample
|
sample id: T29
tissue: blood
age: 84
gender: Female
rs7956957 genotype: GG
|
Gene expression data from human blood samples
|
| Sample_geo_accession | GSM624039
| | Sample_status | Public on Nov 17 2010
| | Sample_submission_date | Nov 16 2010
| | Sample_last_update_date | Nov 17 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | EDTA tubes were centrifuged at 3500rpm for 15 min to obtain the white blood cell fraction and the samples were stored at -80ºC until RNA isolation.
| | Sample_growth_protocol_ch1 | Blood samples from 12 sujects were obtained.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from fresh peripheral blood mononuclear cells using a RiboPureTM -Blood kit from Ambion (Ambion, Woodward st. Austin, USA).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Samples were amplified using Two Cycle cDNA Synthesis Affymetrix kit.
| | Sample_label_protocol_ch1 | Samples were chemically fragmented and biotinylated using the IVT Labelling Kit (Affymetrix)
| | Sample_hyb_protocol | cRNA was hybridizated in Human Genome U133 Plus 2.0 Affymetrix microarrays.
| | Sample_scan_protocol | Microarrays were scanned in Affymetrix Genechip Scanner 3000 7G.
| | Sample_data_processing | Chips were processed on an Affymetrix GeneChip Fluidics Station 450. Background adjustment by Robust Multi-Array (RMA) algorithm was applied to probes intensities. Raw probes gene level expression were summarized from the corrected intensities and then quantile normalized. Log2 RMA signal estimates were obtained using R-2.8 and Bioconductor 2.3 Packages
| | Sample_platform_id | GPL570
| | Sample_contact_name | Sophie,,Domingues
| | Sample_contact_email | sophiedomingues@yahoo.fr
| | Sample_contact_phone | +34 934894029
| | Sample_contact_fax | +34 934894102
| | Sample_contact_laboratory | Neurovascular Research Laboratory
| | Sample_contact_department | Department of Neurology
| | Sample_contact_institute | Institut de Recerca Hospital Vall d’Hebron
| | Sample_contact_address | Pg Vall d’Hebron 119-129
| | Sample_contact_city | Barcelona
| | Sample_contact_zip/postal_code | 08035
| | Sample_contact_country | Spain
| | Sample_contact_web_link | http://www.lin-bcn.com/
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM624nnn/GSM624039/suppl/GSM624039_T29.CEL.gz
| | Sample_series_id | GSE25414
| | Sample_data_row_count | 54675
| | |
|
GSM624040 | GPL570 |
|
Sample T41
|
Human blood sample
|
sample id: T41
tissue: blood
age: 79
gender: Female
rs7956957 genotype: CC
|
Gene expression data from human blood samples
|
| Sample_geo_accession | GSM624040
| | Sample_status | Public on Nov 17 2010
| | Sample_submission_date | Nov 16 2010
| | Sample_last_update_date | Nov 17 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | EDTA tubes were centrifuged at 3500rpm for 15 min to obtain the white blood cell fraction and the samples were stored at -80ºC until RNA isolation.
| | Sample_growth_protocol_ch1 | Blood samples from 12 sujects were obtained.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from fresh peripheral blood mononuclear cells using a RiboPureTM -Blood kit from Ambion (Ambion, Woodward st. Austin, USA).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Samples were amplified using Two Cycle cDNA Synthesis Affymetrix kit.
| | Sample_label_protocol_ch1 | Samples were chemically fragmented and biotinylated using the IVT Labelling Kit (Affymetrix)
| | Sample_hyb_protocol | cRNA was hybridizated in Human Genome U133 Plus 2.0 Affymetrix microarrays.
| | Sample_scan_protocol | Microarrays were scanned in Affymetrix Genechip Scanner 3000 7G.
| | Sample_data_processing | Chips were processed on an Affymetrix GeneChip Fluidics Station 450. Background adjustment by Robust Multi-Array (RMA) algorithm was applied to probes intensities. Raw probes gene level expression were summarized from the corrected intensities and then quantile normalized. Log2 RMA signal estimates were obtained using R-2.8 and Bioconductor 2.3 Packages
| | Sample_platform_id | GPL570
| | Sample_contact_name | Sophie,,Domingues
| | Sample_contact_email | sophiedomingues@yahoo.fr
| | Sample_contact_phone | +34 934894029
| | Sample_contact_fax | +34 934894102
| | Sample_contact_laboratory | Neurovascular Research Laboratory
| | Sample_contact_department | Department of Neurology
| | Sample_contact_institute | Institut de Recerca Hospital Vall d’Hebron
| | Sample_contact_address | Pg Vall d’Hebron 119-129
| | Sample_contact_city | Barcelona
| | Sample_contact_zip/postal_code | 08035
| | Sample_contact_country | Spain
| | Sample_contact_web_link | http://www.lin-bcn.com/
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM624nnn/GSM624040/suppl/GSM624040_T41.CEL.gz
| | Sample_series_id | GSE25414
| | Sample_data_row_count | 54675
| | |
|
GSM624041 | GPL570 |
|
Sample T46
|
Human blood sample
|
sample id: T46
tissue: blood
age: 61
gender: Female
rs7956957 genotype: GG
|
Gene expression data from human blood samples
|
| Sample_geo_accession | GSM624041
| | Sample_status | Public on Nov 17 2010
| | Sample_submission_date | Nov 16 2010
| | Sample_last_update_date | Nov 17 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | EDTA tubes were centrifuged at 3500rpm for 15 min to obtain the white blood cell fraction and the samples were stored at -80ºC until RNA isolation.
| | Sample_growth_protocol_ch1 | Blood samples from 12 sujects were obtained.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from fresh peripheral blood mononuclear cells using a RiboPureTM -Blood kit from Ambion (Ambion, Woodward st. Austin, USA).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Samples were amplified using Two Cycle cDNA Synthesis Affymetrix kit.
| | Sample_label_protocol_ch1 | Samples were chemically fragmented and biotinylated using the IVT Labelling Kit (Affymetrix)
| | Sample_hyb_protocol | cRNA was hybridizated in Human Genome U133 Plus 2.0 Affymetrix microarrays.
| | Sample_scan_protocol | Microarrays were scanned in Affymetrix Genechip Scanner 3000 7G.
| | Sample_data_processing | Chips were processed on an Affymetrix GeneChip Fluidics Station 450. Background adjustment by Robust Multi-Array (RMA) algorithm was applied to probes intensities. Raw probes gene level expression were summarized from the corrected intensities and then quantile normalized. Log2 RMA signal estimates were obtained using R-2.8 and Bioconductor 2.3 Packages
| | Sample_platform_id | GPL570
| | Sample_contact_name | Sophie,,Domingues
| | Sample_contact_email | sophiedomingues@yahoo.fr
| | Sample_contact_phone | +34 934894029
| | Sample_contact_fax | +34 934894102
| | Sample_contact_laboratory | Neurovascular Research Laboratory
| | Sample_contact_department | Department of Neurology
| | Sample_contact_institute | Institut de Recerca Hospital Vall d’Hebron
| | Sample_contact_address | Pg Vall d’Hebron 119-129
| | Sample_contact_city | Barcelona
| | Sample_contact_zip/postal_code | 08035
| | Sample_contact_country | Spain
| | Sample_contact_web_link | http://www.lin-bcn.com/
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM624nnn/GSM624041/suppl/GSM624041_T46.CEL.gz
| | Sample_series_id | GSE25414
| | Sample_data_row_count | 54675
| | |
|
GSM624042 | GPL570 |
|
Sample T61
|
Human blood sample
|
sample id: T61
tissue: blood
age: 75
gender: Male
rs7956957 genotype: GG
|
Gene expression data from human blood samples
|
| Sample_geo_accession | GSM624042
| | Sample_status | Public on Nov 17 2010
| | Sample_submission_date | Nov 16 2010
| | Sample_last_update_date | Nov 17 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | EDTA tubes were centrifuged at 3500rpm for 15 min to obtain the white blood cell fraction and the samples were stored at -80ºC until RNA isolation.
| | Sample_growth_protocol_ch1 | Blood samples from 12 sujects were obtained.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from fresh peripheral blood mononuclear cells using a RiboPureTM -Blood kit from Ambion (Ambion, Woodward st. Austin, USA).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Samples were amplified using Two Cycle cDNA Synthesis Affymetrix kit.
| | Sample_label_protocol_ch1 | Samples were chemically fragmented and biotinylated using the IVT Labelling Kit (Affymetrix)
| | Sample_hyb_protocol | cRNA was hybridizated in Human Genome U133 Plus 2.0 Affymetrix microarrays.
| | Sample_scan_protocol | Microarrays were scanned in Affymetrix Genechip Scanner 3000 7G.
| | Sample_data_processing | Chips were processed on an Affymetrix GeneChip Fluidics Station 450. Background adjustment by Robust Multi-Array (RMA) algorithm was applied to probes intensities. Raw probes gene level expression were summarized from the corrected intensities and then quantile normalized. Log2 RMA signal estimates were obtained using R-2.8 and Bioconductor 2.3 Packages
| | Sample_platform_id | GPL570
| | Sample_contact_name | Sophie,,Domingues
| | Sample_contact_email | sophiedomingues@yahoo.fr
| | Sample_contact_phone | +34 934894029
| | Sample_contact_fax | +34 934894102
| | Sample_contact_laboratory | Neurovascular Research Laboratory
| | Sample_contact_department | Department of Neurology
| | Sample_contact_institute | Institut de Recerca Hospital Vall d’Hebron
| | Sample_contact_address | Pg Vall d’Hebron 119-129
| | Sample_contact_city | Barcelona
| | Sample_contact_zip/postal_code | 08035
| | Sample_contact_country | Spain
| | Sample_contact_web_link | http://www.lin-bcn.com/
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM624nnn/GSM624042/suppl/GSM624042_T61.CEL.gz
| | Sample_series_id | GSE25414
| | Sample_data_row_count | 54675
| | |
|
GSM624043 | GPL570 |
|
Sample R199
|
Human blood sample
|
sample id: R199
tissue: blood
age: 50
gender: Female
rs7956957 genotype: GG
|
Gene expression data from human blood samples
|
| Sample_geo_accession | GSM624043
| | Sample_status | Public on Nov 17 2010
| | Sample_submission_date | Nov 16 2010
| | Sample_last_update_date | Nov 17 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | EDTA tubes were centrifuged at 3500rpm for 15 min to obtain the white blood cell fraction and the samples were stored at -80ºC until RNA isolation.
| | Sample_growth_protocol_ch1 | Blood samples from 12 sujects were obtained.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from fresh peripheral blood mononuclear cells using a RiboPureTM -Blood kit from Ambion (Ambion, Woodward st. Austin, USA).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Samples were amplified using Two Cycle cDNA Synthesis Affymetrix kit.
| | Sample_label_protocol_ch1 | Samples were chemically fragmented and biotinylated using the IVT Labelling Kit (Affymetrix)
| | Sample_hyb_protocol | cRNA was hybridizated in Human Genome U133 Plus 2.0 Affymetrix microarrays.
| | Sample_scan_protocol | Microarrays were scanned in Affymetrix Genechip Scanner 3000 7G.
| | Sample_data_processing | Chips were processed on an Affymetrix GeneChip Fluidics Station 450. Background adjustment by Robust Multi-Array (RMA) algorithm was applied to probes intensities. Raw probes gene level expression were summarized from the corrected intensities and then quantile normalized. Log2 RMA signal estimates were obtained using R-2.8 and Bioconductor 2.3 Packages
| | Sample_platform_id | GPL570
| | Sample_contact_name | Sophie,,Domingues
| | Sample_contact_email | sophiedomingues@yahoo.fr
| | Sample_contact_phone | +34 934894029
| | Sample_contact_fax | +34 934894102
| | Sample_contact_laboratory | Neurovascular Research Laboratory
| | Sample_contact_department | Department of Neurology
| | Sample_contact_institute | Institut de Recerca Hospital Vall d’Hebron
| | Sample_contact_address | Pg Vall d’Hebron 119-129
| | Sample_contact_city | Barcelona
| | Sample_contact_zip/postal_code | 08035
| | Sample_contact_country | Spain
| | Sample_contact_web_link | http://www.lin-bcn.com/
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM624nnn/GSM624043/suppl/GSM624043_R199.CEL.gz
| | Sample_series_id | GSE25414
| | Sample_data_row_count | 54675
| | |
|
GSM624044 | GPL570 |
|
Sample 14140
|
Human blood sample
|
sample id: 14140
tissue: blood
age: 64
gender: Male
rs7956957 genotype: CG
|
Gene expression data from human blood samples
|
| Sample_geo_accession | GSM624044
| | Sample_status | Public on Nov 17 2010
| | Sample_submission_date | Nov 16 2010
| | Sample_last_update_date | Nov 17 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | EDTA tubes were centrifuged at 3500rpm for 15 min to obtain the white blood cell fraction and the samples were stored at -80ºC until RNA isolation.
| | Sample_growth_protocol_ch1 | Blood samples from 12 sujects were obtained.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from fresh peripheral blood mononuclear cells using a RiboPureTM -Blood kit from Ambion (Ambion, Woodward st. Austin, USA).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Samples were amplified using Two Cycle cDNA Synthesis Affymetrix kit.
| | Sample_label_protocol_ch1 | Samples were chemically fragmented and biotinylated using the IVT Labelling Kit (Affymetrix)
| | Sample_hyb_protocol | cRNA was hybridizated in Human Genome U133 Plus 2.0 Affymetrix microarrays.
| | Sample_scan_protocol | Microarrays were scanned in Affymetrix Genechip Scanner 3000 7G.
| | Sample_data_processing | Chips were processed on an Affymetrix GeneChip Fluidics Station 450. Background adjustment by Robust Multi-Array (RMA) algorithm was applied to probes intensities. Raw probes gene level expression were summarized from the corrected intensities and then quantile normalized. Log2 RMA signal estimates were obtained using R-2.8 and Bioconductor 2.3 Packages
| | Sample_platform_id | GPL570
| | Sample_contact_name | Sophie,,Domingues
| | Sample_contact_email | sophiedomingues@yahoo.fr
| | Sample_contact_phone | +34 934894029
| | Sample_contact_fax | +34 934894102
| | Sample_contact_laboratory | Neurovascular Research Laboratory
| | Sample_contact_department | Department of Neurology
| | Sample_contact_institute | Institut de Recerca Hospital Vall d’Hebron
| | Sample_contact_address | Pg Vall d’Hebron 119-129
| | Sample_contact_city | Barcelona
| | Sample_contact_zip/postal_code | 08035
| | Sample_contact_country | Spain
| | Sample_contact_web_link | http://www.lin-bcn.com/
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM624nnn/GSM624044/suppl/GSM624044_14140.CEL.gz
| | Sample_series_id | GSE25414
| | Sample_data_row_count | 54675
| | |
|
GSM624045 | GPL570 |
|
Sample 14054
|
Human blood sample
|
sample id: 14054
tissue: blood
age: 76
gender: Male
rs7956957 genotype: CC
|
Gene expression data from human blood samples
|
| Sample_geo_accession | GSM624045
| | Sample_status | Public on Nov 17 2010
| | Sample_submission_date | Nov 16 2010
| | Sample_last_update_date | Nov 17 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | EDTA tubes were centrifuged at 3500rpm for 15 min to obtain the white blood cell fraction and the samples were stored at -80ºC until RNA isolation.
| | Sample_growth_protocol_ch1 | Blood samples from 12 sujects were obtained.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from fresh peripheral blood mononuclear cells using a RiboPureTM -Blood kit from Ambion (Ambion, Woodward st. Austin, USA).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Samples were amplified using Two Cycle cDNA Synthesis Affymetrix kit.
| | Sample_label_protocol_ch1 | Samples were chemically fragmented and biotinylated using the IVT Labelling Kit (Affymetrix)
| | Sample_hyb_protocol | cRNA was hybridizated in Human Genome U133 Plus 2.0 Affymetrix microarrays.
| | Sample_scan_protocol | Microarrays were scanned in Affymetrix Genechip Scanner 3000 7G.
| | Sample_data_processing | Chips were processed on an Affymetrix GeneChip Fluidics Station 450. Background adjustment by Robust Multi-Array (RMA) algorithm was applied to probes intensities. Raw probes gene level expression were summarized from the corrected intensities and then quantile normalized. Log2 RMA signal estimates were obtained using R-2.8 and Bioconductor 2.3 Packages
| | Sample_platform_id | GPL570
| | Sample_contact_name | Sophie,,Domingues
| | Sample_contact_email | sophiedomingues@yahoo.fr
| | Sample_contact_phone | +34 934894029
| | Sample_contact_fax | +34 934894102
| | Sample_contact_laboratory | Neurovascular Research Laboratory
| | Sample_contact_department | Department of Neurology
| | Sample_contact_institute | Institut de Recerca Hospital Vall d’Hebron
| | Sample_contact_address | Pg Vall d’Hebron 119-129
| | Sample_contact_city | Barcelona
| | Sample_contact_zip/postal_code | 08035
| | Sample_contact_country | Spain
| | Sample_contact_web_link | http://www.lin-bcn.com/
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM624nnn/GSM624045/suppl/GSM624045_14054.CEL.gz
| | Sample_series_id | GSE25414
| | Sample_data_row_count | 54675
| | |
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