Search results for the GEO ID: GSE25493  |
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GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM626946 | GPL10175 |
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nc_070208
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786-O
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cell line: 786-O
cell type: renal cell carcinoma (RCC)
subtype: control_786_O
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Gene expression data were obtained from 786-O and Caki-1 cell lines.
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| Sample_geo_accession | GSM626946
| | Sample_status | Public on Jul 31 2013
| | Sample_submission_date | Nov 18 2010
| | Sample_last_update_date | Aug 01 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | 10 ug of Qiagen-purified total RNA. R-Phycoerythrin Streptavidin (SAPE), from Molecular Probes, 1 mg/ml (we use 6 ul per reaction).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 7G.
| | Sample_data_processing | The data were analyzed with MBNI re-mapped CDF files, version 12. RMA normalization was performed.
| | Sample_platform_id | GPL10175
| | Sample_contact_name | Karl,,Dykema
| | Sample_contact_laboratory | Lab of Computational Biology
| | Sample_contact_institute | Van Andel Institute
| | Sample_contact_address | 333 Bostwick Ave. NE
| | Sample_contact_city | Grand Rapids
| | Sample_contact_state | MI
| | Sample_contact_zip/postal_code | 49503
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM626nnn/GSM626946/suppl/GSM626946.CEL.gz
| | Sample_series_id | GSE25493
| | Sample_data_row_count | 17726
| | |
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GSM626947 | GPL10175 |
|
t_070208
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786-O
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cell line: 786-O
cell type: renal cell carcinoma (RCC)
subtype: knockdown_786_O
|
Gene expression data were obtained from 786-O and Caki-1 cell lines.
|
| Sample_geo_accession | GSM626947
| | Sample_status | Public on Jul 31 2013
| | Sample_submission_date | Nov 18 2010
| | Sample_last_update_date | Aug 01 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | 10 ug of Qiagen-purified total RNA. R-Phycoerythrin Streptavidin (SAPE), from Molecular Probes, 1 mg/ml (we use 6 ul per reaction).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 7G.
| | Sample_data_processing | The data were analyzed with MBNI re-mapped CDF files, version 12. RMA normalization was performed.
| | Sample_platform_id | GPL10175
| | Sample_contact_name | Karl,,Dykema
| | Sample_contact_laboratory | Lab of Computational Biology
| | Sample_contact_institute | Van Andel Institute
| | Sample_contact_address | 333 Bostwick Ave. NE
| | Sample_contact_city | Grand Rapids
| | Sample_contact_state | MI
| | Sample_contact_zip/postal_code | 49503
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM626nnn/GSM626947/suppl/GSM626947.CEL.gz
| | Sample_series_id | GSE25493
| | Sample_data_row_count | 17726
| | |
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GSM626948 | GPL10175 |
|
W_NC_HTB46_0901808
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Caki-1
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cell line: Caki-1
cell type: renal cell carcinoma (RCC)
subtype: control_caki_1
|
Gene expression data were obtained from 786-O and Caki-1 cell lines.
|
| Sample_geo_accession | GSM626948
| | Sample_status | Public on Jul 31 2013
| | Sample_submission_date | Nov 18 2010
| | Sample_last_update_date | Aug 01 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | 10 ug of Qiagen-purified total RNA. R-Phycoerythrin Streptavidin (SAPE), from Molecular Probes, 1 mg/ml (we use 6 ul per reaction).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 7G.
| | Sample_data_processing | The data were analyzed with MBNI re-mapped CDF files, version 12. RMA normalization was performed.
| | Sample_platform_id | GPL10175
| | Sample_contact_name | Karl,,Dykema
| | Sample_contact_laboratory | Lab of Computational Biology
| | Sample_contact_institute | Van Andel Institute
| | Sample_contact_address | 333 Bostwick Ave. NE
| | Sample_contact_city | Grand Rapids
| | Sample_contact_state | MI
| | Sample_contact_zip/postal_code | 49503
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM626nnn/GSM626948/suppl/GSM626948.CEL.gz
| | Sample_series_id | GSE25493
| | Sample_data_row_count | 17726
| | |
|
GSM626949 | GPL10175 |
|
W_T_HTB46_0901808
|
Caki-1
|
cell line: Caki-1
cell type: renal cell carcinoma (RCC)
subtype: transgenic_caki_1
|
Gene expression data were obtained from 786-O and Caki-1 cell lines.
|
| Sample_geo_accession | GSM626949
| | Sample_status | Public on Jul 31 2013
| | Sample_submission_date | Nov 18 2010
| | Sample_last_update_date | Aug 01 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | 10 ug of Qiagen-purified total RNA. R-Phycoerythrin Streptavidin (SAPE), from Molecular Probes, 1 mg/ml (we use 6 ul per reaction).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 7G.
| | Sample_data_processing | The data were analyzed with MBNI re-mapped CDF files, version 12. RMA normalization was performed.
| | Sample_platform_id | GPL10175
| | Sample_contact_name | Karl,,Dykema
| | Sample_contact_laboratory | Lab of Computational Biology
| | Sample_contact_institute | Van Andel Institute
| | Sample_contact_address | 333 Bostwick Ave. NE
| | Sample_contact_city | Grand Rapids
| | Sample_contact_state | MI
| | Sample_contact_zip/postal_code | 49503
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM626nnn/GSM626949/suppl/GSM626949.CEL.gz
| | Sample_series_id | GSE25493
| | Sample_data_row_count | 17726
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