Search results for the GEO ID: GSE25548  |
(Click on the check boxes provided under "Select for analysis", to initiate grouping) |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM627994 | GPL1261 |
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het_1210
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basal epidermal cells from E16.5 embryos
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strain: Rosa26
age: E16.5
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| Sample_geo_accession | GSM627994
| | Sample_status | Public on Jan 20 2011
| | Sample_submission_date | Nov 22 2010
| | Sample_last_update_date | Jan 20 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | trizol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | 3 prime IVT express
| | Sample_hyb_protocol | according to manufacturer
| | Sample_scan_protocol | according to manufacturer
| | Sample_data_processing | MAS5 algorithm, overall intensity targeted to 500
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Agnes,,Viale
| | Sample_contact_email | vialea@mskcc.org
| | Sample_contact_phone | 212 639 3031
| | Sample_contact_fax | 212 717 3053
| | Sample_contact_laboratory | Genomics Core Laboratory
| | Sample_contact_department | Molecular Biology
| | Sample_contact_institute | Memorial Sloan Kettering Cancer Center
| | Sample_contact_address | 1275 York Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10021
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM627nnn/GSM627994/suppl/GSM627994.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM627nnn/GSM627994/suppl/GSM627994.CHP.gz
| | Sample_series_id | GSE25548
| | Sample_data_row_count | 45101
| | |
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GSM627995 | GPL1261 |
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het_1261
|
purification of basal epidermal cells from E16.5 embryos
|
strain: Rosa26
age: E16.5
|
|
| Sample_geo_accession | GSM627995
| | Sample_status | Public on Jan 20 2011
| | Sample_submission_date | Nov 22 2010
| | Sample_last_update_date | Jan 20 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | FACS purification of basal epidermal cells from E16.5 SRF fl/fl ROSA26 YFP fl/fl K14-Cre (cKO) or SRF fl/+ ROSA26 YFP fl/fl K14-Cre (WT) was performed on a FACS Vantage SE system equipped with FACS DiVa software (BD Biosciences). Cells were gated for single events and viability and then sorted according to α6 integrin-PE expression and YFP.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | trizol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | 3 prime IVT express
| | Sample_hyb_protocol | according to manufacturer
| | Sample_scan_protocol | according to manufacturer
| | Sample_data_processing | MAS5 algorithm, overall intensity targeted to 500
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Agnes,,Viale
| | Sample_contact_email | vialea@mskcc.org
| | Sample_contact_phone | 212 639 3031
| | Sample_contact_fax | 212 717 3053
| | Sample_contact_laboratory | Genomics Core Laboratory
| | Sample_contact_department | Molecular Biology
| | Sample_contact_institute | Memorial Sloan Kettering Cancer Center
| | Sample_contact_address | 1275 York Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10021
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM627nnn/GSM627995/suppl/GSM627995.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM627nnn/GSM627995/suppl/GSM627995.CHP.gz
| | Sample_series_id | GSE25548
| | Sample_data_row_count | 45101
| | |
|
GSM627996 | GPL1261 |
|
Ko_1210
|
purification of basal epidermal cells from E16.5 embryos
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strain: SRF fl/fl ROSA26 YFP fl/fl K14-Cre
age: E16.5
|
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| Sample_geo_accession | GSM627996
| | Sample_status | Public on Jan 20 2011
| | Sample_submission_date | Nov 22 2010
| | Sample_last_update_date | Jan 20 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | FACS purification of basal epidermal cells from E16.5 SRF fl/fl ROSA26 YFP fl/fl K14-Cre (cKO) or SRF fl/+ ROSA26 YFP fl/fl K14-Cre (WT) was performed on a FACS Vantage SE system equipped with FACS DiVa software (BD Biosciences). Cells were gated for single events and viability and then sorted according to α6 integrin-PE expression and YFP.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | trizol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | 3 prime IVT express
| | Sample_hyb_protocol | according to manufacturer
| | Sample_scan_protocol | according to manufacturer
| | Sample_data_processing | MAS5 algorithm, overall intensity targeted to 500
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Agnes,,Viale
| | Sample_contact_email | vialea@mskcc.org
| | Sample_contact_phone | 212 639 3031
| | Sample_contact_fax | 212 717 3053
| | Sample_contact_laboratory | Genomics Core Laboratory
| | Sample_contact_department | Molecular Biology
| | Sample_contact_institute | Memorial Sloan Kettering Cancer Center
| | Sample_contact_address | 1275 York Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10021
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM627nnn/GSM627996/suppl/GSM627996.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM627nnn/GSM627996/suppl/GSM627996.CHP.gz
| | Sample_series_id | GSE25548
| | Sample_data_row_count | 45101
| | |
|
GSM627997 | GPL1261 |
|
KO_1261
|
purification of basal epidermal cells from E16.5 embryos
|
strain: SRF fl/fl ROSA26 YFP fl/fl K14-Cre
age: E16.5
|
|
| Sample_geo_accession | GSM627997
| | Sample_status | Public on Jan 20 2011
| | Sample_submission_date | Nov 22 2010
| | Sample_last_update_date | Jan 20 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | FACS purification of basal epidermal cells from E16.5 SRF fl/fl ROSA26 YFP fl/fl K14-Cre (cKO) or SRF fl/+ ROSA26 YFP fl/fl K14-Cre (WT) was performed on a FACS Vantage SE system equipped with FACS DiVa software (BD Biosciences). Cells were gated for single events and viability and then sorted according to α6 integrin-PE expression and YFP.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | trizol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | 3 prime IVT express
| | Sample_hyb_protocol | according to manufacturer
| | Sample_scan_protocol | according to manufacturer
| | Sample_data_processing | MAS5 algorithm, overall intensity targeted to 500
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Agnes,,Viale
| | Sample_contact_email | vialea@mskcc.org
| | Sample_contact_phone | 212 639 3031
| | Sample_contact_fax | 212 717 3053
| | Sample_contact_laboratory | Genomics Core Laboratory
| | Sample_contact_department | Molecular Biology
| | Sample_contact_institute | Memorial Sloan Kettering Cancer Center
| | Sample_contact_address | 1275 York Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10021
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM627nnn/GSM627997/suppl/GSM627997.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM627nnn/GSM627997/suppl/GSM627997.CHP.gz
| | Sample_series_id | GSE25548
| | Sample_data_row_count | 45101
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