Search results for the GEO ID: GSE25613  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM629484 | GPL570 |
|
G519_1_sensitive
|
Mantel cell lymphoma cell line, sensitive to ABT-737
|
cell type: Mantel Cell Lymphoma
cell line: G519
|
G519_D1_3
|
| Sample_geo_accession | GSM629484
| | Sample_status | Public on Jul 01 2011
| | Sample_submission_date | Nov 24 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Cells were cultured in RPMI-1640 medium supplemented with 10% FBS
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The cells were harvested with TRIzol Reagent (Invitrogen) and the RNA was extracted according to the manufacturer's instructions. As a last step of the extraction procedure, the RNA was purified with the RNeasy Mini-kit (Qiagen, Hilden, Germany).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | The cDNA was prepared from 2 microg total RNA using the One –Cycle cDNA Synthesis kit from Affymetrix. This cDNA was used for synthezising the cRNA using the IVT labeling kit (Affymetrix). The synthezised cRNA was purified with the GeneChip Sample Cleanup Module (Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 microg of cRNA were hybridized to the Affymetrix HG-U133Plus2 chip according to the protocols provided by the manufacturer.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 from Affymetrix.
| | Sample_data_processing | RMA in Bioconductor.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Vicente,Jose,Fresquet
| | Sample_contact_email | vfresquet@unav.es
| | Sample_contact_phone | 34-948-194700
| | Sample_contact_fax | 34-948-194714
| | Sample_contact_laboratory | Molecular Oncology
| | Sample_contact_department | Division of Oncology
| | Sample_contact_institute | Center for Applied Medical Research (Cima)
| | Sample_contact_address | Av Pio XII 55
| | Sample_contact_city | Pamplona
| | Sample_contact_state | Navarra
| | Sample_contact_zip/postal_code | 31008
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM629nnn/GSM629484/suppl/GSM629484.CEL.gz
| | Sample_series_id | GSE25613
| | Sample_data_row_count | 54675
| | |
|
GSM629485 | GPL570 |
|
G519_2_sensitive
|
Mantel cell lymphoma cell line, sensitive to ABT-737
|
cell type: Mantel Cell Lymphoma
cell line: G519
|
G519_D4
|
| Sample_geo_accession | GSM629485
| | Sample_status | Public on Jul 01 2011
| | Sample_submission_date | Nov 24 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Cells were cultured in RPMI-1640 medium supplemented with 10% FBS
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The cells were harvested with TRIzol Reagent (Invitrogen) and the RNA was extracted according to the manufacturer's instructions. As a last step of the extraction procedure, the RNA was purified with the RNeasy Mini-kit (Qiagen, Hilden, Germany).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | The cDNA was prepared from 2 microg total RNA using the One –Cycle cDNA Synthesis kit from Affymetrix. This cDNA was used for synthezising the cRNA using the IVT labeling kit (Affymetrix). The synthezised cRNA was purified with the GeneChip Sample Cleanup Module (Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 microg of cRNA were hybridized to the Affymetrix HG-U133Plus2 chip according to the protocols provided by the manufacturer.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 from Affymetrix.
| | Sample_data_processing | RMA in Bioconductor.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Vicente,Jose,Fresquet
| | Sample_contact_email | vfresquet@unav.es
| | Sample_contact_phone | 34-948-194700
| | Sample_contact_fax | 34-948-194714
| | Sample_contact_laboratory | Molecular Oncology
| | Sample_contact_department | Division of Oncology
| | Sample_contact_institute | Center for Applied Medical Research (Cima)
| | Sample_contact_address | Av Pio XII 55
| | Sample_contact_city | Pamplona
| | Sample_contact_state | Navarra
| | Sample_contact_zip/postal_code | 31008
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM629nnn/GSM629485/suppl/GSM629485.CEL.gz
| | Sample_series_id | GSE25613
| | Sample_data_row_count | 54675
| | |
|
GSM629486 | GPL570 |
|
HBL2_1_sensitive
|
Mantel cell lymphoma cell line, sensitive to ABT-737
|
cell type: Mantel Cell Lymphoma
cell line: HBL2
|
HBL2_D2_10
|
| Sample_geo_accession | GSM629486
| | Sample_status | Public on Jul 01 2011
| | Sample_submission_date | Nov 24 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Cells were cultured in RPMI-1640 medium supplemented with 10% FBS
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The cells were harvested with TRIzol Reagent (Invitrogen) and the RNA was extracted according to the manufacturer's instructions. As a last step of the extraction procedure, the RNA was purified with the RNeasy Mini-kit (Qiagen, Hilden, Germany).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | The cDNA was prepared from 2 microg total RNA using the One –Cycle cDNA Synthesis kit from Affymetrix. This cDNA was used for synthezising the cRNA using the IVT labeling kit (Affymetrix). The synthezised cRNA was purified with the GeneChip Sample Cleanup Module (Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 microg of cRNA were hybridized to the Affymetrix HG-U133Plus2 chip according to the protocols provided by the manufacturer.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 from Affymetrix.
| | Sample_data_processing | RMA in Bioconductor.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Vicente,Jose,Fresquet
| | Sample_contact_email | vfresquet@unav.es
| | Sample_contact_phone | 34-948-194700
| | Sample_contact_fax | 34-948-194714
| | Sample_contact_laboratory | Molecular Oncology
| | Sample_contact_department | Division of Oncology
| | Sample_contact_institute | Center for Applied Medical Research (Cima)
| | Sample_contact_address | Av Pio XII 55
| | Sample_contact_city | Pamplona
| | Sample_contact_state | Navarra
| | Sample_contact_zip/postal_code | 31008
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM629nnn/GSM629486/suppl/GSM629486.CEL.gz
| | Sample_series_id | GSE25613
| | Sample_data_row_count | 54675
| | |
|
GSM629487 | GPL570 |
|
HBL2_2_sensitive
|
Mantel cell lymphoma cell line, sensitive to ABT-737
|
cell type: Mantel Cell Lymphoma
cell line: HBL2
|
HBL2_D4
|
| Sample_geo_accession | GSM629487
| | Sample_status | Public on Jul 01 2011
| | Sample_submission_date | Nov 24 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Cells were cultured in RPMI-1640 medium supplemented with 10% FBS
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The cells were harvested with TRIzol Reagent (Invitrogen) and the RNA was extracted according to the manufacturer's instructions. As a last step of the extraction procedure, the RNA was purified with the RNeasy Mini-kit (Qiagen, Hilden, Germany).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | The cDNA was prepared from 2 microg total RNA using the One –Cycle cDNA Synthesis kit from Affymetrix. This cDNA was used for synthezising the cRNA using the IVT labeling kit (Affymetrix). The synthezised cRNA was purified with the GeneChip Sample Cleanup Module (Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 microg of cRNA were hybridized to the Affymetrix HG-U133Plus2 chip according to the protocols provided by the manufacturer.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 from Affymetrix.
| | Sample_data_processing | RMA in Bioconductor.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Vicente,Jose,Fresquet
| | Sample_contact_email | vfresquet@unav.es
| | Sample_contact_phone | 34-948-194700
| | Sample_contact_fax | 34-948-194714
| | Sample_contact_laboratory | Molecular Oncology
| | Sample_contact_department | Division of Oncology
| | Sample_contact_institute | Center for Applied Medical Research (Cima)
| | Sample_contact_address | Av Pio XII 55
| | Sample_contact_city | Pamplona
| | Sample_contact_state | Navarra
| | Sample_contact_zip/postal_code | 31008
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM629nnn/GSM629487/suppl/GSM629487.CEL.gz
| | Sample_series_id | GSE25613
| | Sample_data_row_count | 54675
| | |
|
GSM629488 | GPL570 |
|
IRM2_1_resistant
|
Mantel cell lymphoma cell line, resistant to ABT-737
|
cell type: Mantel Cell Lymphoma
cell line: IRM2
|
IRM2_D1_6
|
| Sample_geo_accession | GSM629488
| | Sample_status | Public on Jul 01 2011
| | Sample_submission_date | Nov 24 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Cells were cultured in RPMI-1640 medium supplemented with 10% FBS
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The cells were harvested with TRIzol Reagent (Invitrogen) and the RNA was extracted according to the manufacturer's instructions. As a last step of the extraction procedure, the RNA was purified with the RNeasy Mini-kit (Qiagen, Hilden, Germany).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | The cDNA was prepared from 2 microg total RNA using the One –Cycle cDNA Synthesis kit from Affymetrix. This cDNA was used for synthezising the cRNA using the IVT labeling kit (Affymetrix). The synthezised cRNA was purified with the GeneChip Sample Cleanup Module (Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 microg of cRNA were hybridized to the Affymetrix HG-U133Plus2 chip according to the protocols provided by the manufacturer.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 from Affymetrix.
| | Sample_data_processing | RMA in Bioconductor.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Vicente,Jose,Fresquet
| | Sample_contact_email | vfresquet@unav.es
| | Sample_contact_phone | 34-948-194700
| | Sample_contact_fax | 34-948-194714
| | Sample_contact_laboratory | Molecular Oncology
| | Sample_contact_department | Division of Oncology
| | Sample_contact_institute | Center for Applied Medical Research (Cima)
| | Sample_contact_address | Av Pio XII 55
| | Sample_contact_city | Pamplona
| | Sample_contact_state | Navarra
| | Sample_contact_zip/postal_code | 31008
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM629nnn/GSM629488/suppl/GSM629488.CEL.gz
| | Sample_series_id | GSE25613
| | Sample_data_row_count | 54675
| | |
|
GSM629489 | GPL570 |
|
IRM2_2_resistant
|
Mantel cell lymphoma cell line, resistant to ABT-737
|
cell type: Mantel Cell Lymphoma
cell line: IRM2
|
IRM2_D5
|
| Sample_geo_accession | GSM629489
| | Sample_status | Public on Jul 01 2011
| | Sample_submission_date | Nov 24 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Cells were cultured in RPMI-1640 medium supplemented with 10% FBS
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The cells were harvested with TRIzol Reagent (Invitrogen) and the RNA was extracted according to the manufacturer's instructions. As a last step of the extraction procedure, the RNA was purified with the RNeasy Mini-kit (Qiagen, Hilden, Germany).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | The cDNA was prepared from 2 microg total RNA using the One –Cycle cDNA Synthesis kit from Affymetrix. This cDNA was used for synthezising the cRNA using the IVT labeling kit (Affymetrix). The synthezised cRNA was purified with the GeneChip Sample Cleanup Module (Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 microg of cRNA were hybridized to the Affymetrix HG-U133Plus2 chip according to the protocols provided by the manufacturer.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 from Affymetrix.
| | Sample_data_processing | RMA in Bioconductor.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Vicente,Jose,Fresquet
| | Sample_contact_email | vfresquet@unav.es
| | Sample_contact_phone | 34-948-194700
| | Sample_contact_fax | 34-948-194714
| | Sample_contact_laboratory | Molecular Oncology
| | Sample_contact_department | Division of Oncology
| | Sample_contact_institute | Center for Applied Medical Research (Cima)
| | Sample_contact_address | Av Pio XII 55
| | Sample_contact_city | Pamplona
| | Sample_contact_state | Navarra
| | Sample_contact_zip/postal_code | 31008
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM629nnn/GSM629489/suppl/GSM629489.CEL.gz
| | Sample_series_id | GSE25613
| | Sample_data_row_count | 54675
| | |
|
GSM629490 | GPL570 |
|
JEKO_1_resistant
|
Mantel cell lymphoma cell line, resistant to ABT-737
|
cell type: Mantel Cell Lymphoma
cell line: JEKO
|
JEKO_D3
|
| Sample_geo_accession | GSM629490
| | Sample_status | Public on Jul 01 2011
| | Sample_submission_date | Nov 24 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Cells were cultured in RPMI-1640 medium supplemented with 10% FBS
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The cells were harvested with TRIzol Reagent (Invitrogen) and the RNA was extracted according to the manufacturer's instructions. As a last step of the extraction procedure, the RNA was purified with the RNeasy Mini-kit (Qiagen, Hilden, Germany).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | The cDNA was prepared from 2 microg total RNA using the One –Cycle cDNA Synthesis kit from Affymetrix. This cDNA was used for synthezising the cRNA using the IVT labeling kit (Affymetrix). The synthezised cRNA was purified with the GeneChip Sample Cleanup Module (Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 microg of cRNA were hybridized to the Affymetrix HG-U133Plus2 chip according to the protocols provided by the manufacturer.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 from Affymetrix.
| | Sample_data_processing | RMA in Bioconductor.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Vicente,Jose,Fresquet
| | Sample_contact_email | vfresquet@unav.es
| | Sample_contact_phone | 34-948-194700
| | Sample_contact_fax | 34-948-194714
| | Sample_contact_laboratory | Molecular Oncology
| | Sample_contact_department | Division of Oncology
| | Sample_contact_institute | Center for Applied Medical Research (Cima)
| | Sample_contact_address | Av Pio XII 55
| | Sample_contact_city | Pamplona
| | Sample_contact_state | Navarra
| | Sample_contact_zip/postal_code | 31008
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM629nnn/GSM629490/suppl/GSM629490.CEL.gz
| | Sample_series_id | GSE25613
| | Sample_data_row_count | 54675
| | |
|
GSM629491 | GPL570 |
|
JEKO_2_resistant
|
Mantel cell lymphoma cell line, resistant to ABT-737
|
cell type: Mantel Cell Lymphoma
cell line: JEKO
|
JEKO_D5
|
| Sample_geo_accession | GSM629491
| | Sample_status | Public on Jul 01 2011
| | Sample_submission_date | Nov 24 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Cells were cultured in RPMI-1640 medium supplemented with 10% FBS
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The cells were harvested with TRIzol Reagent (Invitrogen) and the RNA was extracted according to the manufacturer's instructions. As a last step of the extraction procedure, the RNA was purified with the RNeasy Mini-kit (Qiagen, Hilden, Germany).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | The cDNA was prepared from 2 microg total RNA using the One –Cycle cDNA Synthesis kit from Affymetrix. This cDNA was used for synthezising the cRNA using the IVT labeling kit (Affymetrix). The synthezised cRNA was purified with the GeneChip Sample Cleanup Module (Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 microg of cRNA were hybridized to the Affymetrix HG-U133Plus2 chip according to the protocols provided by the manufacturer.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 from Affymetrix.
| | Sample_data_processing | RMA in Bioconductor.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Vicente,Jose,Fresquet
| | Sample_contact_email | vfresquet@unav.es
| | Sample_contact_phone | 34-948-194700
| | Sample_contact_fax | 34-948-194714
| | Sample_contact_laboratory | Molecular Oncology
| | Sample_contact_department | Division of Oncology
| | Sample_contact_institute | Center for Applied Medical Research (Cima)
| | Sample_contact_address | Av Pio XII 55
| | Sample_contact_city | Pamplona
| | Sample_contact_state | Navarra
| | Sample_contact_zip/postal_code | 31008
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM629nnn/GSM629491/suppl/GSM629491.CEL.gz
| | Sample_series_id | GSE25613
| | Sample_data_row_count | 54675
| | |
|
GSM629492 | GPL570 |
|
JVM2_1_resistant
|
Mantel cell lymphoma cell line, resistant to ABT-737
|
cell type: Mantel Cell Lymphoma
cell line: JVM2
|
JVM2_D1_7
|
| Sample_geo_accession | GSM629492
| | Sample_status | Public on Jul 01 2011
| | Sample_submission_date | Nov 24 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Cells were cultured in RPMI-1640 medium supplemented with 10% FBS
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The cells were harvested with TRIzol Reagent (Invitrogen) and the RNA was extracted according to the manufacturer's instructions. As a last step of the extraction procedure, the RNA was purified with the RNeasy Mini-kit (Qiagen, Hilden, Germany).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | The cDNA was prepared from 2 microg total RNA using the One –Cycle cDNA Synthesis kit from Affymetrix. This cDNA was used for synthezising the cRNA using the IVT labeling kit (Affymetrix). The synthezised cRNA was purified with the GeneChip Sample Cleanup Module (Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 microg of cRNA were hybridized to the Affymetrix HG-U133Plus2 chip according to the protocols provided by the manufacturer.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 from Affymetrix.
| | Sample_data_processing | RMA in Bioconductor.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Vicente,Jose,Fresquet
| | Sample_contact_email | vfresquet@unav.es
| | Sample_contact_phone | 34-948-194700
| | Sample_contact_fax | 34-948-194714
| | Sample_contact_laboratory | Molecular Oncology
| | Sample_contact_department | Division of Oncology
| | Sample_contact_institute | Center for Applied Medical Research (Cima)
| | Sample_contact_address | Av Pio XII 55
| | Sample_contact_city | Pamplona
| | Sample_contact_state | Navarra
| | Sample_contact_zip/postal_code | 31008
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM629nnn/GSM629492/suppl/GSM629492.CEL.gz
| | Sample_series_id | GSE25613
| | Sample_data_row_count | 54675
| | |
|
GSM629493 | GPL570 |
|
JVM2_2_resistant
|
Mantel cell lymphoma cell line, resistant to ABT-737
|
cell type: Mantel Cell Lymphoma
cell line: JVM2
|
JVM2_D4
|
| Sample_geo_accession | GSM629493
| | Sample_status | Public on Jul 01 2011
| | Sample_submission_date | Nov 24 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Cells were cultured in RPMI-1640 medium supplemented with 10% FBS
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The cells were harvested with TRIzol Reagent (Invitrogen) and the RNA was extracted according to the manufacturer's instructions. As a last step of the extraction procedure, the RNA was purified with the RNeasy Mini-kit (Qiagen, Hilden, Germany).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | The cDNA was prepared from 2 microg total RNA using the One –Cycle cDNA Synthesis kit from Affymetrix. This cDNA was used for synthezising the cRNA using the IVT labeling kit (Affymetrix). The synthezised cRNA was purified with the GeneChip Sample Cleanup Module (Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 microg of cRNA were hybridized to the Affymetrix HG-U133Plus2 chip according to the protocols provided by the manufacturer.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 from Affymetrix.
| | Sample_data_processing | RMA in Bioconductor.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Vicente,Jose,Fresquet
| | Sample_contact_email | vfresquet@unav.es
| | Sample_contact_phone | 34-948-194700
| | Sample_contact_fax | 34-948-194714
| | Sample_contact_laboratory | Molecular Oncology
| | Sample_contact_department | Division of Oncology
| | Sample_contact_institute | Center for Applied Medical Research (Cima)
| | Sample_contact_address | Av Pio XII 55
| | Sample_contact_city | Pamplona
| | Sample_contact_state | Navarra
| | Sample_contact_zip/postal_code | 31008
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM629nnn/GSM629493/suppl/GSM629493.CEL.gz
| | Sample_series_id | GSE25613
| | Sample_data_row_count | 54675
| | |
|
GSM629494 | GPL570 |
|
L128_1_resistant
|
Mantel cell lymphoma cell line, resistant to ABT-737
|
cell type: Mantel Cell Lymphoma
cell line: L128
|
L128_D2_9
|
| Sample_geo_accession | GSM629494
| | Sample_status | Public on Jul 01 2011
| | Sample_submission_date | Nov 24 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Cells were cultured in RPMI-1640 medium supplemented with 10% FBS
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The cells were harvested with TRIzol Reagent (Invitrogen) and the RNA was extracted according to the manufacturer's instructions. As a last step of the extraction procedure, the RNA was purified with the RNeasy Mini-kit (Qiagen, Hilden, Germany).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | The cDNA was prepared from 2 microg total RNA using the One –Cycle cDNA Synthesis kit from Affymetrix. This cDNA was used for synthezising the cRNA using the IVT labeling kit (Affymetrix). The synthezised cRNA was purified with the GeneChip Sample Cleanup Module (Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 microg of cRNA were hybridized to the Affymetrix HG-U133Plus2 chip according to the protocols provided by the manufacturer.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 from Affymetrix.
| | Sample_data_processing | RMA in Bioconductor.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Vicente,Jose,Fresquet
| | Sample_contact_email | vfresquet@unav.es
| | Sample_contact_phone | 34-948-194700
| | Sample_contact_fax | 34-948-194714
| | Sample_contact_laboratory | Molecular Oncology
| | Sample_contact_department | Division of Oncology
| | Sample_contact_institute | Center for Applied Medical Research (Cima)
| | Sample_contact_address | Av Pio XII 55
| | Sample_contact_city | Pamplona
| | Sample_contact_state | Navarra
| | Sample_contact_zip/postal_code | 31008
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM629nnn/GSM629494/suppl/GSM629494.CEL.gz
| | Sample_series_id | GSE25613
| | Sample_data_row_count | 54675
| | |
|
GSM629495 | GPL570 |
|
L128_2_resistant
|
Mantel cell lymphoma cell line, resistant to ABT-737
|
cell type: Mantel Cell Lymphoma
cell line: L128
|
L128_D5
|
| Sample_geo_accession | GSM629495
| | Sample_status | Public on Jul 01 2011
| | Sample_submission_date | Nov 24 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Cells were cultured in RPMI-1640 medium supplemented with 10% FBS
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The cells were harvested with TRIzol Reagent (Invitrogen) and the RNA was extracted according to the manufacturer's instructions. As a last step of the extraction procedure, the RNA was purified with the RNeasy Mini-kit (Qiagen, Hilden, Germany).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | The cDNA was prepared from 2 microg total RNA using the One –Cycle cDNA Synthesis kit from Affymetrix. This cDNA was used for synthezising the cRNA using the IVT labeling kit (Affymetrix). The synthezised cRNA was purified with the GeneChip Sample Cleanup Module (Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 microg of cRNA were hybridized to the Affymetrix HG-U133Plus2 chip according to the protocols provided by the manufacturer.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 from Affymetrix.
| | Sample_data_processing | RMA in Bioconductor.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Vicente,Jose,Fresquet
| | Sample_contact_email | vfresquet@unav.es
| | Sample_contact_phone | 34-948-194700
| | Sample_contact_fax | 34-948-194714
| | Sample_contact_laboratory | Molecular Oncology
| | Sample_contact_department | Division of Oncology
| | Sample_contact_institute | Center for Applied Medical Research (Cima)
| | Sample_contact_address | Av Pio XII 55
| | Sample_contact_city | Pamplona
| | Sample_contact_state | Navarra
| | Sample_contact_zip/postal_code | 31008
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM629nnn/GSM629495/suppl/GSM629495.CEL.gz
| | Sample_series_id | GSE25613
| | Sample_data_row_count | 54675
| | |
|
GSM629496 | GPL570 |
|
MINO_1_sensitive
|
Mantel cell lymphoma cell line, sensitive to ABT-737
|
cell type: Mantel Cell Lymphoma
cell line: MINO
|
MINO_D1_5
|
| Sample_geo_accession | GSM629496
| | Sample_status | Public on Jul 01 2011
| | Sample_submission_date | Nov 24 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Cells were cultured in RPMI-1640 medium supplemented with 10% FBS
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The cells were harvested with TRIzol Reagent (Invitrogen) and the RNA was extracted according to the manufacturer's instructions. As a last step of the extraction procedure, the RNA was purified with the RNeasy Mini-kit (Qiagen, Hilden, Germany).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | The cDNA was prepared from 2 microg total RNA using the One –Cycle cDNA Synthesis kit from Affymetrix. This cDNA was used for synthezising the cRNA using the IVT labeling kit (Affymetrix). The synthezised cRNA was purified with the GeneChip Sample Cleanup Module (Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 microg of cRNA were hybridized to the Affymetrix HG-U133Plus2 chip according to the protocols provided by the manufacturer.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 from Affymetrix.
| | Sample_data_processing | RMA in Bioconductor.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Vicente,Jose,Fresquet
| | Sample_contact_email | vfresquet@unav.es
| | Sample_contact_phone | 34-948-194700
| | Sample_contact_fax | 34-948-194714
| | Sample_contact_laboratory | Molecular Oncology
| | Sample_contact_department | Division of Oncology
| | Sample_contact_institute | Center for Applied Medical Research (Cima)
| | Sample_contact_address | Av Pio XII 55
| | Sample_contact_city | Pamplona
| | Sample_contact_state | Navarra
| | Sample_contact_zip/postal_code | 31008
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM629nnn/GSM629496/suppl/GSM629496.CEL.gz
| | Sample_series_id | GSE25613
| | Sample_data_row_count | 54675
| | |
|
GSM629497 | GPL570 |
|
MINO_2_sensitive
|
Mantel cell lymphoma cell line, sensitive to ABT-737
|
cell type: Mantel Cell Lymphoma
cell line: MINO
|
MINO_D4
|
| Sample_geo_accession | GSM629497
| | Sample_status | Public on Jul 01 2011
| | Sample_submission_date | Nov 24 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Cells were cultured in RPMI-1640 medium supplemented with 10% FBS
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The cells were harvested with TRIzol Reagent (Invitrogen) and the RNA was extracted according to the manufacturer's instructions. As a last step of the extraction procedure, the RNA was purified with the RNeasy Mini-kit (Qiagen, Hilden, Germany).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | The cDNA was prepared from 2 microg total RNA using the One –Cycle cDNA Synthesis kit from Affymetrix. This cDNA was used for synthezising the cRNA using the IVT labeling kit (Affymetrix). The synthezised cRNA was purified with the GeneChip Sample Cleanup Module (Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 microg of cRNA were hybridized to the Affymetrix HG-U133Plus2 chip according to the protocols provided by the manufacturer.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 from Affymetrix.
| | Sample_data_processing | RMA in Bioconductor.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Vicente,Jose,Fresquet
| | Sample_contact_email | vfresquet@unav.es
| | Sample_contact_phone | 34-948-194700
| | Sample_contact_fax | 34-948-194714
| | Sample_contact_laboratory | Molecular Oncology
| | Sample_contact_department | Division of Oncology
| | Sample_contact_institute | Center for Applied Medical Research (Cima)
| | Sample_contact_address | Av Pio XII 55
| | Sample_contact_city | Pamplona
| | Sample_contact_state | Navarra
| | Sample_contact_zip/postal_code | 31008
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM629nnn/GSM629497/suppl/GSM629497.CEL.gz
| | Sample_series_id | GSE25613
| | Sample_data_row_count | 54675
| | |
|
GSM629498 | GPL570 |
|
REC1_1_resistant
|
Mantel cell lymphoma cell line, resistant to ABT-737
|
cell type: Mantel Cell Lymphoma
cell line: REC1
|
REC1_D1_1
|
| Sample_geo_accession | GSM629498
| | Sample_status | Public on Jul 01 2011
| | Sample_submission_date | Nov 24 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Cells were cultured in RPMI-1640 medium supplemented with 10% FBS
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The cells were harvested with TRIzol Reagent (Invitrogen) and the RNA was extracted according to the manufacturer's instructions. As a last step of the extraction procedure, the RNA was purified with the RNeasy Mini-kit (Qiagen, Hilden, Germany).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | The cDNA was prepared from 2 microg total RNA using the One –Cycle cDNA Synthesis kit from Affymetrix. This cDNA was used for synthezising the cRNA using the IVT labeling kit (Affymetrix). The synthezised cRNA was purified with the GeneChip Sample Cleanup Module (Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 microg of cRNA were hybridized to the Affymetrix HG-U133Plus2 chip according to the protocols provided by the manufacturer.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 from Affymetrix.
| | Sample_data_processing | RMA in Bioconductor.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Vicente,Jose,Fresquet
| | Sample_contact_email | vfresquet@unav.es
| | Sample_contact_phone | 34-948-194700
| | Sample_contact_fax | 34-948-194714
| | Sample_contact_laboratory | Molecular Oncology
| | Sample_contact_department | Division of Oncology
| | Sample_contact_institute | Center for Applied Medical Research (Cima)
| | Sample_contact_address | Av Pio XII 55
| | Sample_contact_city | Pamplona
| | Sample_contact_state | Navarra
| | Sample_contact_zip/postal_code | 31008
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM629nnn/GSM629498/suppl/GSM629498.CEL.gz
| | Sample_series_id | GSE25613
| | Sample_data_row_count | 54675
| | |
|
GSM629499 | GPL570 |
|
REC1_2_resistant
|
Mantel cell lymphoma cell line, resistant to ABT-737
|
cell type: Mantel Cell Lymphoma
cell line: REC1
|
REC1_D5
|
| Sample_geo_accession | GSM629499
| | Sample_status | Public on Jul 01 2011
| | Sample_submission_date | Nov 24 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Cells were cultured in RPMI-1640 medium supplemented with 10% FBS
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The cells were harvested with TRIzol Reagent (Invitrogen) and the RNA was extracted according to the manufacturer's instructions. As a last step of the extraction procedure, the RNA was purified with the RNeasy Mini-kit (Qiagen, Hilden, Germany).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | The cDNA was prepared from 2 microg total RNA using the One –Cycle cDNA Synthesis kit from Affymetrix. This cDNA was used for synthezising the cRNA using the IVT labeling kit (Affymetrix). The synthezised cRNA was purified with the GeneChip Sample Cleanup Module (Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 microg of cRNA were hybridized to the Affymetrix HG-U133Plus2 chip according to the protocols provided by the manufacturer.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 from Affymetrix.
| | Sample_data_processing | RMA in Bioconductor.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Vicente,Jose,Fresquet
| | Sample_contact_email | vfresquet@unav.es
| | Sample_contact_phone | 34-948-194700
| | Sample_contact_fax | 34-948-194714
| | Sample_contact_laboratory | Molecular Oncology
| | Sample_contact_department | Division of Oncology
| | Sample_contact_institute | Center for Applied Medical Research (Cima)
| | Sample_contact_address | Av Pio XII 55
| | Sample_contact_city | Pamplona
| | Sample_contact_state | Navarra
| | Sample_contact_zip/postal_code | 31008
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM629nnn/GSM629499/suppl/GSM629499.CEL.gz
| | Sample_series_id | GSE25613
| | Sample_data_row_count | 54675
| | |
|
GSM629500 | GPL570 |
|
UPN1_1_resistant
|
Mantel cell lymphoma cell line, resistant to ABT-737
|
cell type: Mantel Cell Lymphoma
cell line: UPN1
|
UPN1_D1_4
|
| Sample_geo_accession | GSM629500
| | Sample_status | Public on Jul 01 2011
| | Sample_submission_date | Nov 24 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Cells were cultured in RPMI-1640 medium supplemented with 10% FBS
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The cells were harvested with TRIzol Reagent (Invitrogen) and the RNA was extracted according to the manufacturer's instructions. As a last step of the extraction procedure, the RNA was purified with the RNeasy Mini-kit (Qiagen, Hilden, Germany).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | The cDNA was prepared from 2 microg total RNA using the One –Cycle cDNA Synthesis kit from Affymetrix. This cDNA was used for synthezising the cRNA using the IVT labeling kit (Affymetrix). The synthezised cRNA was purified with the GeneChip Sample Cleanup Module (Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 microg of cRNA were hybridized to the Affymetrix HG-U133Plus2 chip according to the protocols provided by the manufacturer.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 from Affymetrix.
| | Sample_data_processing | RMA in Bioconductor.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Vicente,Jose,Fresquet
| | Sample_contact_email | vfresquet@unav.es
| | Sample_contact_phone | 34-948-194700
| | Sample_contact_fax | 34-948-194714
| | Sample_contact_laboratory | Molecular Oncology
| | Sample_contact_department | Division of Oncology
| | Sample_contact_institute | Center for Applied Medical Research (Cima)
| | Sample_contact_address | Av Pio XII 55
| | Sample_contact_city | Pamplona
| | Sample_contact_state | Navarra
| | Sample_contact_zip/postal_code | 31008
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM629nnn/GSM629500/suppl/GSM629500.CEL.gz
| | Sample_series_id | GSE25613
| | Sample_data_row_count | 54675
| | |
|
GSM629501 | GPL570 |
|
UPN1_2_resistant
|
Mantel cell lymphoma cell line, resistant to ABT-737
|
cell type: Mantel Cell Lymphoma
cell line: UPN1
|
UPN1_D5
|
| Sample_geo_accession | GSM629501
| | Sample_status | Public on Jul 01 2011
| | Sample_submission_date | Nov 24 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Cells were cultured in RPMI-1640 medium supplemented with 10% FBS
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The cells were harvested with TRIzol Reagent (Invitrogen) and the RNA was extracted according to the manufacturer's instructions. As a last step of the extraction procedure, the RNA was purified with the RNeasy Mini-kit (Qiagen, Hilden, Germany).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | The cDNA was prepared from 2 microg total RNA using the One –Cycle cDNA Synthesis kit from Affymetrix. This cDNA was used for synthezising the cRNA using the IVT labeling kit (Affymetrix). The synthezised cRNA was purified with the GeneChip Sample Cleanup Module (Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 microg of cRNA were hybridized to the Affymetrix HG-U133Plus2 chip according to the protocols provided by the manufacturer.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 from Affymetrix.
| | Sample_data_processing | RMA in Bioconductor.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Vicente,Jose,Fresquet
| | Sample_contact_email | vfresquet@unav.es
| | Sample_contact_phone | 34-948-194700
| | Sample_contact_fax | 34-948-194714
| | Sample_contact_laboratory | Molecular Oncology
| | Sample_contact_department | Division of Oncology
| | Sample_contact_institute | Center for Applied Medical Research (Cima)
| | Sample_contact_address | Av Pio XII 55
| | Sample_contact_city | Pamplona
| | Sample_contact_state | Navarra
| | Sample_contact_zip/postal_code | 31008
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM629nnn/GSM629501/suppl/GSM629501.CEL.gz
| | Sample_series_id | GSE25613
| | Sample_data_row_count | 54675
| | |
|
GSM629502 | GPL570 |
|
Z138_1_sensitive
|
Mantel cell lymphoma cell line, sensitive to ABT-737
|
cell type: Mantel Cell Lymphoma
cell line: Z138
|
Z138_D1_8
|
| Sample_geo_accession | GSM629502
| | Sample_status | Public on Jul 01 2011
| | Sample_submission_date | Nov 24 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Cells were cultured in RPMI-1640 medium supplemented with 10% FBS
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The cells were harvested with TRIzol Reagent (Invitrogen) and the RNA was extracted according to the manufacturer's instructions. As a last step of the extraction procedure, the RNA was purified with the RNeasy Mini-kit (Qiagen, Hilden, Germany).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | The cDNA was prepared from 2 microg total RNA using the One –Cycle cDNA Synthesis kit from Affymetrix. This cDNA was used for synthezising the cRNA using the IVT labeling kit (Affymetrix). The synthezised cRNA was purified with the GeneChip Sample Cleanup Module (Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 microg of cRNA were hybridized to the Affymetrix HG-U133Plus2 chip according to the protocols provided by the manufacturer.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 from Affymetrix.
| | Sample_data_processing | RMA in Bioconductor.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Vicente,Jose,Fresquet
| | Sample_contact_email | vfresquet@unav.es
| | Sample_contact_phone | 34-948-194700
| | Sample_contact_fax | 34-948-194714
| | Sample_contact_laboratory | Molecular Oncology
| | Sample_contact_department | Division of Oncology
| | Sample_contact_institute | Center for Applied Medical Research (Cima)
| | Sample_contact_address | Av Pio XII 55
| | Sample_contact_city | Pamplona
| | Sample_contact_state | Navarra
| | Sample_contact_zip/postal_code | 31008
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM629nnn/GSM629502/suppl/GSM629502.CEL.gz
| | Sample_series_id | GSE25613
| | Sample_data_row_count | 54675
| | |
|
GSM629503 | GPL570 |
|
Z138_2_sensitive
|
Mantel cell lymphoma cell line, sensitive to ABT-737
|
cell type: Mantel Cell Lymphoma
cell line: Z138
|
Z138_D4
|
| Sample_geo_accession | GSM629503
| | Sample_status | Public on Jul 01 2011
| | Sample_submission_date | Nov 24 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Cells were cultured in RPMI-1640 medium supplemented with 10% FBS
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The cells were harvested with TRIzol Reagent (Invitrogen) and the RNA was extracted according to the manufacturer's instructions. As a last step of the extraction procedure, the RNA was purified with the RNeasy Mini-kit (Qiagen, Hilden, Germany).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | The cDNA was prepared from 2 microg total RNA using the One –Cycle cDNA Synthesis kit from Affymetrix. This cDNA was used for synthezising the cRNA using the IVT labeling kit (Affymetrix). The synthezised cRNA was purified with the GeneChip Sample Cleanup Module (Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 microg of cRNA were hybridized to the Affymetrix HG-U133Plus2 chip according to the protocols provided by the manufacturer.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 from Affymetrix.
| | Sample_data_processing | RMA in Bioconductor.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Vicente,Jose,Fresquet
| | Sample_contact_email | vfresquet@unav.es
| | Sample_contact_phone | 34-948-194700
| | Sample_contact_fax | 34-948-194714
| | Sample_contact_laboratory | Molecular Oncology
| | Sample_contact_department | Division of Oncology
| | Sample_contact_institute | Center for Applied Medical Research (Cima)
| | Sample_contact_address | Av Pio XII 55
| | Sample_contact_city | Pamplona
| | Sample_contact_state | Navarra
| | Sample_contact_zip/postal_code | 31008
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM629nnn/GSM629503/suppl/GSM629503.CEL.gz
| | Sample_series_id | GSE25613
| | Sample_data_row_count | 54675
| | |
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