Search results for the GEO ID: GSE25616  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM629511 | GPL1261 |
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HGI1
|
High GI diet fed mice number 1
|
strain: QSi5
energy balance: positive energy
|
Gene expression data from HGI diet fed QSi5 mice
|
| Sample_geo_accession | GSM629511
| | Sample_status | Public on Jun 21 2011
| | Sample_submission_date | Nov 26 2010
| | Sample_last_update_date | Jun 21 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Two different diet namely HGI diet and LGI diet.
| | Sample_growth_protocol_ch1 | QSi5 strain of mice were fed with the HGI and LGI diet from pregnancy to peak lactation. During Peak lactation, the mice were sacrifised and RNA was extracted from the liver.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted from the liver samples using the RNeasy Mini Kit according to manufacturer instructions (Qiagen, Melbourne Australia)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | One-cycle target labelling
| | Sample_hyb_protocol | Affymetrix Standard protocol
| | Sample_scan_protocol | Affymetrix GeneChip Scanner 3000
| | Sample_data_processing | The data were analyzed with R version 2.6.1 statistical software. Background correction, quantile normalization and calculation of expression using median polish were done using the robust multi chip average (RMA) method.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | SJ,,Arun
| | Sample_contact_institute | unsw
| | Sample_contact_address | Faculty of Medicine
| | Sample_contact_city | Sydney
| | Sample_contact_state | NSW
| | Sample_contact_zip/postal_code | 2037
| | Sample_contact_country | Australia
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM629nnn/GSM629511/suppl/GSM629511.CEL.gz
| | Sample_series_id | GSE25616
| | Sample_data_row_count | 45101
| | |
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GSM629512 | GPL1261 |
|
HGI2
|
High GI diet fed mice number 2
|
strain: QSi5
energy balance: positive energy
|
Gene expression data from HGI diet fed QSi5 mice
|
| Sample_geo_accession | GSM629512
| | Sample_status | Public on Jun 21 2011
| | Sample_submission_date | Nov 26 2010
| | Sample_last_update_date | Jun 21 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Two different diet namely HGI diet and LGI diet.
| | Sample_growth_protocol_ch1 | QSi5 strain of mice were fed with the HGI and LGI diet from pregnancy to peak lactation. During Peak lactation, the mice were sacrifised and RNA was extracted from the liver.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted from the liver samples using the RNeasy Mini Kit according to manufacturer instructions (Qiagen, Melbourne Australia)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | One-cycle target labelling
| | Sample_hyb_protocol | Affymetrix Standard protocol
| | Sample_scan_protocol | Affymetrix GeneChip Scanner 3000
| | Sample_data_processing | The data were analyzed with R version 2.6.1 statistical software. Background correction, quantile normalization and calculation of expression using median polish were done using the robust multi chip average (RMA) method.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | SJ,,Arun
| | Sample_contact_institute | unsw
| | Sample_contact_address | Faculty of Medicine
| | Sample_contact_city | Sydney
| | Sample_contact_state | NSW
| | Sample_contact_zip/postal_code | 2037
| | Sample_contact_country | Australia
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM629nnn/GSM629512/suppl/GSM629512.CEL.gz
| | Sample_series_id | GSE25616
| | Sample_data_row_count | 45101
| | |
|
GSM629513 | GPL1261 |
|
HGI3
|
High GI diet fed mice number 3
|
strain: QSi5
energy balance: positive energy
|
Gene expression data from HGI diet fed QSi5 mice
|
| Sample_geo_accession | GSM629513
| | Sample_status | Public on Jun 21 2011
| | Sample_submission_date | Nov 26 2010
| | Sample_last_update_date | Jun 21 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Two different diet namely HGI diet and LGI diet.
| | Sample_growth_protocol_ch1 | QSi5 strain of mice were fed with the HGI and LGI diet from pregnancy to peak lactation. During Peak lactation, the mice were sacrifised and RNA was extracted from the liver.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted from the liver samples using the RNeasy Mini Kit according to manufacturer instructions (Qiagen, Melbourne Australia)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | One-cycle target labelling
| | Sample_hyb_protocol | Affymetrix Standard protocol
| | Sample_scan_protocol | Affymetrix GeneChip Scanner 3000
| | Sample_data_processing | The data were analyzed with R version 2.6.1 statistical software. Background correction, quantile normalization and calculation of expression using median polish were done using the robust multi chip average (RMA) method.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | SJ,,Arun
| | Sample_contact_institute | unsw
| | Sample_contact_address | Faculty of Medicine
| | Sample_contact_city | Sydney
| | Sample_contact_state | NSW
| | Sample_contact_zip/postal_code | 2037
| | Sample_contact_country | Australia
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM629nnn/GSM629513/suppl/GSM629513.CEL.gz
| | Sample_series_id | GSE25616
| | Sample_data_row_count | 45101
| | |
|
GSM629514 | GPL1261 |
|
HGI4
|
High GI diet fed mice number 4
|
strain: QSi5
energy balance: positive
|
Gene expression data from HGI diet fed QSi5 mice
|
| Sample_geo_accession | GSM629514
| | Sample_status | Public on Jun 21 2011
| | Sample_submission_date | Nov 26 2010
| | Sample_last_update_date | Jun 21 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Two different diet namely HGI diet and LGI diet.
| | Sample_growth_protocol_ch1 | QSi5 strain of mice were fed with the HGI and LGI diet from pregnancy to peak lactation. During Peak lactation, the mice were sacrifised and RNA was extracted from the liver.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted from the liver samples using the RNeasy Mini Kit according to manufacturer instructions (Qiagen, Melbourne Australia)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | One-cycle target labelling
| | Sample_hyb_protocol | Affymetrix Standard protocol
| | Sample_scan_protocol | Affymetrix GeneChip Scanner 3000
| | Sample_data_processing | The data were analyzed with R version 2.6.1 statistical software. Background correction, quantile normalization and calculation of expression using median polish were done using the robust multi chip average (RMA) method.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | SJ,,Arun
| | Sample_contact_institute | unsw
| | Sample_contact_address | Faculty of Medicine
| | Sample_contact_city | Sydney
| | Sample_contact_state | NSW
| | Sample_contact_zip/postal_code | 2037
| | Sample_contact_country | Australia
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM629nnn/GSM629514/suppl/GSM629514.CEL.gz
| | Sample_series_id | GSE25616
| | Sample_data_row_count | 45101
| | |
|
GSM629515 | GPL1261 |
|
HGI5
|
High GI diet fed mice number 5
|
strain: QSi5
energy balance: positive energy
|
Gene expression data from HGI diet fed QSi5 mice
|
| Sample_geo_accession | GSM629515
| | Sample_status | Public on Jun 21 2011
| | Sample_submission_date | Nov 26 2010
| | Sample_last_update_date | Jun 21 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Two different diet namely HGI diet and LGI diet.
| | Sample_growth_protocol_ch1 | QSi5 strain of mice were fed with the HGI and LGI diet from pregnancy to peak lactation. During Peak lactation, the mice were sacrifised and RNA was extracted from the liver.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted from the liver samples using the RNeasy Mini Kit according to manufacturer instructions (Qiagen, Melbourne Australia)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | One-cycle target labelling
| | Sample_hyb_protocol | Affymetrix Standard protocol
| | Sample_scan_protocol | Affymetrix GeneChip Scanner 3000
| | Sample_data_processing | The data were analyzed with R version 2.6.1 statistical software. Background correction, quantile normalization and calculation of expression using median polish were done using the robust multi chip average (RMA) method.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | SJ,,Arun
| | Sample_contact_institute | unsw
| | Sample_contact_address | Faculty of Medicine
| | Sample_contact_city | Sydney
| | Sample_contact_state | NSW
| | Sample_contact_zip/postal_code | 2037
| | Sample_contact_country | Australia
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM629nnn/GSM629515/suppl/GSM629515.CEL.gz
| | Sample_series_id | GSE25616
| | Sample_data_row_count | 45101
| | |
|
GSM629516 | GPL1261 |
|
LGI1
|
Low GI diet fed mice number 1
|
strain: QSi5
energy balance: Negative energy
|
Gene expression data from LGI diet fed QSi5 mice
|
| Sample_geo_accession | GSM629516
| | Sample_status | Public on Jun 21 2011
| | Sample_submission_date | Nov 26 2010
| | Sample_last_update_date | Jun 21 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Two different diet namely HGI diet and LGI diet.
| | Sample_growth_protocol_ch1 | QSi5 strain of mice were fed with the HGI and LGI diet from pregnancy to peak lactation. During Peak lactation, the mice were sacrifised and RNA was extracted from the liver.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted from the liver samples using the RNeasy Mini Kit according to manufacturer instructions (Qiagen, Melbourne Australia)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | One-cycle target labelling
| | Sample_hyb_protocol | Affymetrix Standard protocol
| | Sample_scan_protocol | Affymetrix GeneChip Scanner 3000
| | Sample_data_processing | The data were analyzed with R version 2.6.1 statistical software. Background correction, quantile normalization and calculation of expression using median polish were done using the robust multi chip average (RMA) method.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | SJ,,Arun
| | Sample_contact_institute | unsw
| | Sample_contact_address | Faculty of Medicine
| | Sample_contact_city | Sydney
| | Sample_contact_state | NSW
| | Sample_contact_zip/postal_code | 2037
| | Sample_contact_country | Australia
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM629nnn/GSM629516/suppl/GSM629516.CEL.gz
| | Sample_series_id | GSE25616
| | Sample_data_row_count | 45101
| | |
|
GSM629517 | GPL1261 |
|
LGI2
|
Low GI diet fed mice number 2
|
strain: QSi5
energy balance: Negative energy
|
Gene expression data from LGI diet fed QSi5 mice
|
| Sample_geo_accession | GSM629517
| | Sample_status | Public on Jun 21 2011
| | Sample_submission_date | Nov 26 2010
| | Sample_last_update_date | Jun 21 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Two different diet namely HGI diet and LGI diet.
| | Sample_growth_protocol_ch1 | QSi5 strain of mice were fed with the HGI and LGI diet from pregnancy to peak lactation. During Peak lactation, the mice were sacrifised and RNA was extracted from the liver.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted from the liver samples using the RNeasy Mini Kit according to manufacturer instructions (Qiagen, Melbourne Australia)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | One-cycle target labelling
| | Sample_hyb_protocol | Affymetrix Standard protocol
| | Sample_scan_protocol | Affymetrix GeneChip Scanner 3000
| | Sample_data_processing | The data were analyzed with R version 2.6.1 statistical software. Background correction, quantile normalization and calculation of expression using median polish were done using the robust multi chip average (RMA) method.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | SJ,,Arun
| | Sample_contact_institute | unsw
| | Sample_contact_address | Faculty of Medicine
| | Sample_contact_city | Sydney
| | Sample_contact_state | NSW
| | Sample_contact_zip/postal_code | 2037
| | Sample_contact_country | Australia
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM629nnn/GSM629517/suppl/GSM629517.CEL.gz
| | Sample_series_id | GSE25616
| | Sample_data_row_count | 45101
| | |
|
GSM629518 | GPL1261 |
|
LGI3
|
Low GI diet fed mice number 3
|
strain: QSi5
energy balance: Negative energy
|
Gene expression data from LGI diet fed QSi5 mice
|
| Sample_geo_accession | GSM629518
| | Sample_status | Public on Jun 21 2011
| | Sample_submission_date | Nov 26 2010
| | Sample_last_update_date | Jun 21 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Two different diet namely HGI diet and LGI diet.
| | Sample_growth_protocol_ch1 | QSi5 strain of mice were fed with the HGI and LGI diet from pregnancy to peak lactation. During Peak lactation, the mice were sacrifised and RNA was extracted from the liver.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted from the liver samples using the RNeasy Mini Kit according to manufacturer instructions (Qiagen, Melbourne Australia)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | One-cycle target labelling
| | Sample_hyb_protocol | Affymetrix Standard protocol
| | Sample_scan_protocol | Affymetrix GeneChip Scanner 3000
| | Sample_data_processing | The data were analyzed with R version 2.6.1 statistical software. Background correction, quantile normalization and calculation of expression using median polish were done using the robust multi chip average (RMA) method.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | SJ,,Arun
| | Sample_contact_institute | unsw
| | Sample_contact_address | Faculty of Medicine
| | Sample_contact_city | Sydney
| | Sample_contact_state | NSW
| | Sample_contact_zip/postal_code | 2037
| | Sample_contact_country | Australia
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM629nnn/GSM629518/suppl/GSM629518.CEL.gz
| | Sample_series_id | GSE25616
| | Sample_data_row_count | 45101
| | |
|
GSM629519 | GPL1261 |
|
LGI4
|
Low GI diet fed mice number 4
|
strain: QSi5
energy balance: Negative energy
|
Gene expression data from LGI diet fed QSi5 mice
|
| Sample_geo_accession | GSM629519
| | Sample_status | Public on Jun 21 2011
| | Sample_submission_date | Nov 26 2010
| | Sample_last_update_date | Jun 21 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Two different diet namely HGI diet and LGI diet.
| | Sample_growth_protocol_ch1 | QSi5 strain of mice were fed with the HGI and LGI diet from pregnancy to peak lactation. During Peak lactation, the mice were sacrifised and RNA was extracted from the liver.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted from the liver samples using the RNeasy Mini Kit according to manufacturer instructions (Qiagen, Melbourne Australia)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | One-cycle target labelling
| | Sample_hyb_protocol | Affymetrix Standard protocol
| | Sample_scan_protocol | Affymetrix GeneChip Scanner 3000
| | Sample_data_processing | The data were analyzed with R version 2.6.1 statistical software. Background correction, quantile normalization and calculation of expression using median polish were done using the robust multi chip average (RMA) method.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | SJ,,Arun
| | Sample_contact_institute | unsw
| | Sample_contact_address | Faculty of Medicine
| | Sample_contact_city | Sydney
| | Sample_contact_state | NSW
| | Sample_contact_zip/postal_code | 2037
| | Sample_contact_country | Australia
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM629nnn/GSM629519/suppl/GSM629519.CEL.gz
| | Sample_series_id | GSE25616
| | Sample_data_row_count | 45101
| | |
|
GSM629520 | GPL1261 |
|
LGI5
|
Low GI diet fed mice number 5
|
strain: QSi5
energy balance: Negative energy
|
Gene expression data from LGI diet fed QSi5 mice
|
| Sample_geo_accession | GSM629520
| | Sample_status | Public on Jun 21 2011
| | Sample_submission_date | Nov 26 2010
| | Sample_last_update_date | Jun 21 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Two different diet namely HGI diet and LGI diet.
| | Sample_growth_protocol_ch1 | QSi5 strain of mice were fed with the HGI and LGI diet from pregnancy to peak lactation. During Peak lactation, the mice were sacrifised and RNA was extracted from the liver.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted from the liver samples using the RNeasy Mini Kit according to manufacturer instructions (Qiagen, Melbourne Australia)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | One-cycle target labelling
| | Sample_hyb_protocol | Affymetrix Standard protocol
| | Sample_scan_protocol | Affymetrix GeneChip Scanner 3000
| | Sample_data_processing | The data were analyzed with R version 2.6.1 statistical software. Background correction, quantile normalization and calculation of expression using median polish were done using the robust multi chip average (RMA) method.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | SJ,,Arun
| | Sample_contact_institute | unsw
| | Sample_contact_address | Faculty of Medicine
| | Sample_contact_city | Sydney
| | Sample_contact_state | NSW
| | Sample_contact_zip/postal_code | 2037
| | Sample_contact_country | Australia
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM629nnn/GSM629520/suppl/GSM629520.CEL.gz
| | Sample_series_id | GSE25616
| | Sample_data_row_count | 45101
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