Search results for the GEO ID: GSE25619  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM629547 | GPL570 |
|
CTRL_A
|
fibroblast
|
clinical status: Normal mamary human
cell type: mammary fibroblast
treatment: control
|
Gene expression data from fibrobast activated with PBS
|
| Sample_geo_accession | GSM629547
| | Sample_status | Public on Nov 27 2010
| | Sample_submission_date | Nov 26 2010
| | Sample_last_update_date | Nov 26 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were cultured for 6 days in presence of 1ug/ml recombinant human granulin protein or PBS control
| | Sample_growth_protocol_ch1 | Normal human mamary fibroblasts were cultured with DMEM medium containing 10% calf serum and 10% fetal bovine serum
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from fibroblasts using RNA extraction kits according to the manufacturer’s instructions (Qiagen)
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | Following fragmentation, human HG U133-A oligonucleotide microarrays (Affymetrix) were hybridized for 16 h at 45C, stained and washed according to the Affymetrix protocol.
| | Sample_scan_protocol | Affymetrix GCS 3000 7G scanner using Affymetrix standard protocol
| | Sample_data_processing | Signal normalization was performed by RMA method. RMA expression measure was computed using Bioconductor Affy package in R language (Bioconductor 2.5; R version 2.11.0)
| | Sample_platform_id | GPL570
| | Sample_contact_name | Björn,,Nilsson
| | Sample_contact_email | bjorn.nilsson@med.lu.se
| | Sample_contact_department | Hematology and Transfusion Medicine
| | Sample_contact_institute | Lund University
| | Sample_contact_address | BMC
| | Sample_contact_city | Lund
| | Sample_contact_zip/postal_code | 22184
| | Sample_contact_country | Sweden
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM629nnn/GSM629547/suppl/GSM629547_CTRL_A.CEL.gz
| | Sample_series_id | GSE25619
| | Sample_data_row_count | 54675
| | |
|
GSM629548 | GPL570 |
|
CTRL_B
|
fibroblast
|
clinical status: Normal mamary human
cell type: mammary fibroblast
treatment: control
|
Gene expression data from fibrobast activated with PBS
|
| Sample_geo_accession | GSM629548
| | Sample_status | Public on Nov 27 2010
| | Sample_submission_date | Nov 26 2010
| | Sample_last_update_date | Nov 26 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were cultured for 6 days in presence of 1ug/ml recombinant human granulin protein or PBS control
| | Sample_growth_protocol_ch1 | Normal human mamary fibroblasts were cultured with DMEM medium containing 10% calf serum and 10% fetal bovine serum
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from fibroblasts using RNA extraction kits according to the manufacturer’s instructions (Qiagen)
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | Following fragmentation, human HG U133-A oligonucleotide microarrays (Affymetrix) were hybridized for 16 h at 45C, stained and washed according to the Affymetrix protocol.
| | Sample_scan_protocol | Affymetrix GCS 3000 7G scanner using Affymetrix standard protocol
| | Sample_data_processing | Signal normalization was performed by RMA method. RMA expression measure was computed using Bioconductor Affy package in R language (Bioconductor 2.5; R version 2.11.0)
| | Sample_platform_id | GPL570
| | Sample_contact_name | Björn,,Nilsson
| | Sample_contact_email | bjorn.nilsson@med.lu.se
| | Sample_contact_department | Hematology and Transfusion Medicine
| | Sample_contact_institute | Lund University
| | Sample_contact_address | BMC
| | Sample_contact_city | Lund
| | Sample_contact_zip/postal_code | 22184
| | Sample_contact_country | Sweden
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM629nnn/GSM629548/suppl/GSM629548_CTRL_B.CEL.gz
| | Sample_series_id | GSE25619
| | Sample_data_row_count | 54675
| | |
|
GSM629549 | GPL570 |
|
CTRL_C
|
fibroblast
|
clinical status: Normal mamary human
cell type: mammary fibroblast
treatment: control
|
Gene expression data from fibrobast activated with PBS
|
| Sample_geo_accession | GSM629549
| | Sample_status | Public on Nov 27 2010
| | Sample_submission_date | Nov 26 2010
| | Sample_last_update_date | Nov 26 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were cultured for 6 days in presence of 1ug/ml recombinant human granulin protein or PBS control
| | Sample_growth_protocol_ch1 | Normal human mamary fibroblasts were cultured with DMEM medium containing 10% calf serum and 10% fetal bovine serum
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from fibroblasts using RNA extraction kits according to the manufacturer’s instructions (Qiagen)
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | Following fragmentation, human HG U133-A oligonucleotide microarrays (Affymetrix) were hybridized for 16 h at 45C, stained and washed according to the Affymetrix protocol.
| | Sample_scan_protocol | Affymetrix GCS 3000 7G scanner using Affymetrix standard protocol
| | Sample_data_processing | Signal normalization was performed by RMA method. RMA expression measure was computed using Bioconductor Affy package in R language (Bioconductor 2.5; R version 2.11.0)
| | Sample_platform_id | GPL570
| | Sample_contact_name | Björn,,Nilsson
| | Sample_contact_email | bjorn.nilsson@med.lu.se
| | Sample_contact_department | Hematology and Transfusion Medicine
| | Sample_contact_institute | Lund University
| | Sample_contact_address | BMC
| | Sample_contact_city | Lund
| | Sample_contact_zip/postal_code | 22184
| | Sample_contact_country | Sweden
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM629nnn/GSM629549/suppl/GSM629549_CTRL_C.CEL.gz
| | Sample_series_id | GSE25619
| | Sample_data_row_count | 54675
| | |
|
GSM629550 | GPL570 |
|
PGRN_A
|
fibroblast
|
clinical status: Normal mamary human
cell type: mammary fibroblast
treatment: granulin
|
Gene expression data from fibrobast activated with Granulin
|
| Sample_geo_accession | GSM629550
| | Sample_status | Public on Nov 27 2010
| | Sample_submission_date | Nov 26 2010
| | Sample_last_update_date | Nov 26 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were cultured for 6 days in presence of 1ug/ml recombinant human granulin protein or PBS control
| | Sample_growth_protocol_ch1 | Normal human mamary fibroblasts were cultured with DMEM medium containing 10% calf serum and 10% fetal bovine serum
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from fibroblasts using RNA extraction kits according to the manufacturer’s instructions (Qiagen)
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | Following fragmentation, human HG U133-A oligonucleotide microarrays (Affymetrix) were hybridized for 16 h at 45C, stained and washed according to the Affymetrix protocol.
| | Sample_scan_protocol | Affymetrix GCS 3000 7G scanner using Affymetrix standard protocol
| | Sample_data_processing | Signal normalization was performed by RMA method. RMA expression measure was computed using Bioconductor Affy package in R language (Bioconductor 2.5; R version 2.11.0)
| | Sample_platform_id | GPL570
| | Sample_contact_name | Björn,,Nilsson
| | Sample_contact_email | bjorn.nilsson@med.lu.se
| | Sample_contact_department | Hematology and Transfusion Medicine
| | Sample_contact_institute | Lund University
| | Sample_contact_address | BMC
| | Sample_contact_city | Lund
| | Sample_contact_zip/postal_code | 22184
| | Sample_contact_country | Sweden
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM629nnn/GSM629550/suppl/GSM629550_PGRN_A.CEL.gz
| | Sample_series_id | GSE25619
| | Sample_data_row_count | 54675
| | |
|
GSM629551 | GPL570 |
|
PGRN_B
|
fibroblast
|
clinical status: Normal mamary human
cell type: mammary fibroblast
treatment: granulin
|
Gene expression data from fibrobast activated with Granulin
|
| Sample_geo_accession | GSM629551
| | Sample_status | Public on Nov 27 2010
| | Sample_submission_date | Nov 26 2010
| | Sample_last_update_date | Nov 26 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were cultured for 6 days in presence of 1ug/ml recombinant human granulin protein or PBS control
| | Sample_growth_protocol_ch1 | Normal human mamary fibroblasts were cultured with DMEM medium containing 10% calf serum and 10% fetal bovine serum
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from fibroblasts using RNA extraction kits according to the manufacturer’s instructions (Qiagen)
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | Following fragmentation, human HG U133-A oligonucleotide microarrays (Affymetrix) were hybridized for 16 h at 45C, stained and washed according to the Affymetrix protocol.
| | Sample_scan_protocol | Affymetrix GCS 3000 7G scanner using Affymetrix standard protocol
| | Sample_data_processing | Signal normalization was performed by RMA method. RMA expression measure was computed using Bioconductor Affy package in R language (Bioconductor 2.5; R version 2.11.0)
| | Sample_platform_id | GPL570
| | Sample_contact_name | Björn,,Nilsson
| | Sample_contact_email | bjorn.nilsson@med.lu.se
| | Sample_contact_department | Hematology and Transfusion Medicine
| | Sample_contact_institute | Lund University
| | Sample_contact_address | BMC
| | Sample_contact_city | Lund
| | Sample_contact_zip/postal_code | 22184
| | Sample_contact_country | Sweden
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM629nnn/GSM629551/suppl/GSM629551_PGRN_B.CEL.gz
| | Sample_series_id | GSE25619
| | Sample_data_row_count | 54675
| | |
|
GSM629552 | GPL570 |
|
PGRN_C
|
fibroblast
|
clinical status: Normal mamary human
cell type: mammary fibroblast
treatment: granulin
|
Gene expression data from fibrobast activated with Granulin
|
| Sample_geo_accession | GSM629552
| | Sample_status | Public on Nov 27 2010
| | Sample_submission_date | Nov 26 2010
| | Sample_last_update_date | Nov 26 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were cultured for 6 days in presence of 1ug/ml recombinant human granulin protein or PBS control
| | Sample_growth_protocol_ch1 | Normal human mamary fibroblasts were cultured with DMEM medium containing 10% calf serum and 10% fetal bovine serum
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from fibroblasts using RNA extraction kits according to the manufacturer’s instructions (Qiagen)
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | Following fragmentation, human HG U133-A oligonucleotide microarrays (Affymetrix) were hybridized for 16 h at 45C, stained and washed according to the Affymetrix protocol.
| | Sample_scan_protocol | Affymetrix GCS 3000 7G scanner using Affymetrix standard protocol
| | Sample_data_processing | Signal normalization was performed by RMA method. RMA expression measure was computed using Bioconductor Affy package in R language (Bioconductor 2.5; R version 2.11.0)
| | Sample_platform_id | GPL570
| | Sample_contact_name | Björn,,Nilsson
| | Sample_contact_email | bjorn.nilsson@med.lu.se
| | Sample_contact_department | Hematology and Transfusion Medicine
| | Sample_contact_institute | Lund University
| | Sample_contact_address | BMC
| | Sample_contact_city | Lund
| | Sample_contact_zip/postal_code | 22184
| | Sample_contact_country | Sweden
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM629nnn/GSM629552/suppl/GSM629552_PGRN_C.CEL.gz
| | Sample_series_id | GSE25619
| | Sample_data_row_count | 54675
| | |
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