Search results for the GEO ID: GSE25637  |
(Click on the check boxes provided under "Select for analysis", to initiate grouping) |
(Once the selection is made, click on "Add groups" in "Make groups for comparison", to make a group. Scroll down) |
|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM629885 | GPL1261 |
|
WT_spleen_1
|
frozen tissue, spleen, WT
|
tissue: spleen
genotype/variation: wild type
disease status: healthy control
|
|
| Sample_geo_accession | GSM629885
| | Sample_status | Public on Jul 10 2012
| | Sample_submission_date | Nov 28 2010
| | Sample_last_update_date | Jul 10 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | Frozen biopsies from spleen of WT or Sca1-MALT1 transgenic mice.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The cells were harvested with TRIzol Reagent (Invitrogen) and the RNA was extracted according to the manufacturer's instructions. As a last step of the extraction procedure, the RNA was purified with the RNeasy Mini-kit (Qiagen, Hilden, Germany).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | The cDNA was prepared from 5 microg total RNA using the One –Cycle cDNA Synthesis kit from Affymetrix. This cDNA was used for synthezising the cRNA using the IVT labeling kit (Affimetrix). The synthezised cRNA was purified with the GeneChip Sample Cleanup Module (Affimetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 microg of cRNA were hybridized to the Affymetrix Mouse_430_2 chip according to the protocols provided by the manufacturer.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 from Affymetrix.
| | Sample_data_processing | RMA (R/Bioconductor processing)
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Victor,,Segura
| | Sample_contact_email | vsegura@unav.es
| | Sample_contact_department | Unit of Proteomics, Genomics and Bioinformatics
| | Sample_contact_institute | FIMA
| | Sample_contact_address | Avda. Pío XII, 55
| | Sample_contact_city | Pamplona
| | Sample_contact_state | Navarra
| | Sample_contact_zip/postal_code | 31008
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM629nnn/GSM629885/suppl/GSM629885.CEL.gz
| | Sample_series_id | GSE25637
| | Sample_series_id | GSE25639
| | Sample_data_row_count | 45101
| | |
|
GSM629886 | GPL1261 |
|
WT_spleen_2
|
frozen tissue, spleen, WT
|
tissue: spleen
genotype/variation: wild type
disease status: healthy control
|
|
| Sample_geo_accession | GSM629886
| | Sample_status | Public on Jul 10 2012
| | Sample_submission_date | Nov 28 2010
| | Sample_last_update_date | Jul 10 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | Frozen biopsies from spleen of WT or Sca1-MALT1 transgenic mice.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The cells were harvested with TRIzol Reagent (Invitrogen) and the RNA was extracted according to the manufacturer's instructions. As a last step of the extraction procedure, the RNA was purified with the RNeasy Mini-kit (Qiagen, Hilden, Germany).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | The cDNA was prepared from 5 microg total RNA using the One –Cycle cDNA Synthesis kit from Affymetrix. This cDNA was used for synthezising the cRNA using the IVT labeling kit (Affimetrix). The synthezised cRNA was purified with the GeneChip Sample Cleanup Module (Affimetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 microg of cRNA were hybridized to the Affymetrix Mouse_430_2 chip according to the protocols provided by the manufacturer.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 from Affymetrix.
| | Sample_data_processing | RMA (R/Bioconductor processing)
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Victor,,Segura
| | Sample_contact_email | vsegura@unav.es
| | Sample_contact_department | Unit of Proteomics, Genomics and Bioinformatics
| | Sample_contact_institute | FIMA
| | Sample_contact_address | Avda. Pío XII, 55
| | Sample_contact_city | Pamplona
| | Sample_contact_state | Navarra
| | Sample_contact_zip/postal_code | 31008
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM629nnn/GSM629886/suppl/GSM629886.CEL.gz
| | Sample_series_id | GSE25637
| | Sample_series_id | GSE25639
| | Sample_data_row_count | 45101
| | |
|
GSM629887 | GPL1261 |
|
WT_spleen_3
|
frozen tissue, spleen, WT
|
tissue: spleen
genotype/variation: wild type
disease status: healthy control
|
|
| Sample_geo_accession | GSM629887
| | Sample_status | Public on Jul 10 2012
| | Sample_submission_date | Nov 28 2010
| | Sample_last_update_date | Jul 10 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | Frozen biopsies from spleen of WT or Sca1-MALT1 transgenic mice.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The cells were harvested with TRIzol Reagent (Invitrogen) and the RNA was extracted according to the manufacturer's instructions. As a last step of the extraction procedure, the RNA was purified with the RNeasy Mini-kit (Qiagen, Hilden, Germany).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | The cDNA was prepared from 5 microg total RNA using the One –Cycle cDNA Synthesis kit from Affymetrix. This cDNA was used for synthezising the cRNA using the IVT labeling kit (Affimetrix). The synthezised cRNA was purified with the GeneChip Sample Cleanup Module (Affimetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 microg of cRNA were hybridized to the Affymetrix Mouse_430_2 chip according to the protocols provided by the manufacturer.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 from Affymetrix.
| | Sample_data_processing | RMA (R/Bioconductor processing)
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Victor,,Segura
| | Sample_contact_email | vsegura@unav.es
| | Sample_contact_department | Unit of Proteomics, Genomics and Bioinformatics
| | Sample_contact_institute | FIMA
| | Sample_contact_address | Avda. Pío XII, 55
| | Sample_contact_city | Pamplona
| | Sample_contact_state | Navarra
| | Sample_contact_zip/postal_code | 31008
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM629nnn/GSM629887/suppl/GSM629887.CEL.gz
| | Sample_series_id | GSE25637
| | Sample_series_id | GSE25639
| | Sample_data_row_count | 45101
| | |
|
GSM629888 | GPL1261 |
|
WT_spleen_4
|
frozen tissue, spleen, WT
|
tissue: spleen
genotype/variation: wild type
disease status: healthy control
|
|
| Sample_geo_accession | GSM629888
| | Sample_status | Public on Jul 10 2012
| | Sample_submission_date | Nov 28 2010
| | Sample_last_update_date | Jul 10 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | Frozen biopsies from spleen of WT or Sca1-MALT1 transgenic mice.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The cells were harvested with TRIzol Reagent (Invitrogen) and the RNA was extracted according to the manufacturer's instructions. As a last step of the extraction procedure, the RNA was purified with the RNeasy Mini-kit (Qiagen, Hilden, Germany).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | The cDNA was prepared from 5 microg total RNA using the One –Cycle cDNA Synthesis kit from Affymetrix. This cDNA was used for synthezising the cRNA using the IVT labeling kit (Affimetrix). The synthezised cRNA was purified with the GeneChip Sample Cleanup Module (Affimetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 microg of cRNA were hybridized to the Affymetrix Mouse_430_2 chip according to the protocols provided by the manufacturer.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 from Affymetrix.
| | Sample_data_processing | RMA (R/Bioconductor processing)
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Victor,,Segura
| | Sample_contact_email | vsegura@unav.es
| | Sample_contact_department | Unit of Proteomics, Genomics and Bioinformatics
| | Sample_contact_institute | FIMA
| | Sample_contact_address | Avda. Pío XII, 55
| | Sample_contact_city | Pamplona
| | Sample_contact_state | Navarra
| | Sample_contact_zip/postal_code | 31008
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM629nnn/GSM629888/suppl/GSM629888.CEL.gz
| | Sample_series_id | GSE25637
| | Sample_series_id | GSE25639
| | Sample_data_row_count | 45101
| | |
|
GSM629889 | GPL1261 |
|
Sca1-MALT1_splenic lymphoma_1
|
frozen tissue, splenic lymphoma, Sca1-MALT1
|
tissue: spleen
genotype/variation: Sca1-MALT1
disease status: lymphoma
|
|
| Sample_geo_accession | GSM629889
| | Sample_status | Public on Jul 10 2012
| | Sample_submission_date | Nov 28 2010
| | Sample_last_update_date | Jul 10 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | Frozen biopsies from spleen of WT or Sca1-MALT1 transgenic mice.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The cells were harvested with TRIzol Reagent (Invitrogen) and the RNA was extracted according to the manufacturer's instructions. As a last step of the extraction procedure, the RNA was purified with the RNeasy Mini-kit (Qiagen, Hilden, Germany).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | The cDNA was prepared from 5 microg total RNA using the One –Cycle cDNA Synthesis kit from Affymetrix. This cDNA was used for synthezising the cRNA using the IVT labeling kit (Affimetrix). The synthezised cRNA was purified with the GeneChip Sample Cleanup Module (Affimetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 microg of cRNA were hybridized to the Affymetrix Mouse_430_2 chip according to the protocols provided by the manufacturer.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 from Affymetrix.
| | Sample_data_processing | RMA (R/Bioconductor processing)
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Victor,,Segura
| | Sample_contact_email | vsegura@unav.es
| | Sample_contact_department | Unit of Proteomics, Genomics and Bioinformatics
| | Sample_contact_institute | FIMA
| | Sample_contact_address | Avda. Pío XII, 55
| | Sample_contact_city | Pamplona
| | Sample_contact_state | Navarra
| | Sample_contact_zip/postal_code | 31008
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM629nnn/GSM629889/suppl/GSM629889.CEL.gz
| | Sample_series_id | GSE25637
| | Sample_series_id | GSE25639
| | Sample_data_row_count | 45101
| | |
|
GSM629890 | GPL1261 |
|
Sca1-MALT1_splenic lymphoma_2
|
frozen tissue, splenic lymphoma, Sca1-MALT1
|
tissue: spleen
genotype/variation: Sca1-MALT1
disease status: lymphoma
|
|
| Sample_geo_accession | GSM629890
| | Sample_status | Public on Jul 10 2012
| | Sample_submission_date | Nov 28 2010
| | Sample_last_update_date | Jul 10 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | Frozen biopsies from spleen of WT or Sca1-MALT1 transgenic mice.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The cells were harvested with TRIzol Reagent (Invitrogen) and the RNA was extracted according to the manufacturer's instructions. As a last step of the extraction procedure, the RNA was purified with the RNeasy Mini-kit (Qiagen, Hilden, Germany).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | The cDNA was prepared from 5 microg total RNA using the One –Cycle cDNA Synthesis kit from Affymetrix. This cDNA was used for synthezising the cRNA using the IVT labeling kit (Affimetrix). The synthezised cRNA was purified with the GeneChip Sample Cleanup Module (Affimetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 microg of cRNA were hybridized to the Affymetrix Mouse_430_2 chip according to the protocols provided by the manufacturer.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 from Affymetrix.
| | Sample_data_processing | RMA (R/Bioconductor processing)
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Victor,,Segura
| | Sample_contact_email | vsegura@unav.es
| | Sample_contact_department | Unit of Proteomics, Genomics and Bioinformatics
| | Sample_contact_institute | FIMA
| | Sample_contact_address | Avda. Pío XII, 55
| | Sample_contact_city | Pamplona
| | Sample_contact_state | Navarra
| | Sample_contact_zip/postal_code | 31008
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM629nnn/GSM629890/suppl/GSM629890.CEL.gz
| | Sample_series_id | GSE25637
| | Sample_series_id | GSE25639
| | Sample_data_row_count | 45101
| | |
|
GSM629891 | GPL1261 |
|
Sca1-MALT1_splenic lymphoma_3
|
frozen tissue, splenic lymphoma, Sca1-MALT1
|
tissue: spleen
genotype/variation: Sca1-MALT1
disease status: lymphoma
|
|
| Sample_geo_accession | GSM629891
| | Sample_status | Public on Jul 10 2012
| | Sample_submission_date | Nov 28 2010
| | Sample_last_update_date | Jul 10 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | Frozen biopsies from spleen of WT or Sca1-MALT1 transgenic mice.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The cells were harvested with TRIzol Reagent (Invitrogen) and the RNA was extracted according to the manufacturer's instructions. As a last step of the extraction procedure, the RNA was purified with the RNeasy Mini-kit (Qiagen, Hilden, Germany).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | The cDNA was prepared from 5 microg total RNA using the One –Cycle cDNA Synthesis kit from Affymetrix. This cDNA was used for synthezising the cRNA using the IVT labeling kit (Affimetrix). The synthezised cRNA was purified with the GeneChip Sample Cleanup Module (Affimetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 microg of cRNA were hybridized to the Affymetrix Mouse_430_2 chip according to the protocols provided by the manufacturer.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 from Affymetrix.
| | Sample_data_processing | RMA (R/Bioconductor processing)
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Victor,,Segura
| | Sample_contact_email | vsegura@unav.es
| | Sample_contact_department | Unit of Proteomics, Genomics and Bioinformatics
| | Sample_contact_institute | FIMA
| | Sample_contact_address | Avda. Pío XII, 55
| | Sample_contact_city | Pamplona
| | Sample_contact_state | Navarra
| | Sample_contact_zip/postal_code | 31008
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM629nnn/GSM629891/suppl/GSM629891.CEL.gz
| | Sample_series_id | GSE25637
| | Sample_series_id | GSE25639
| | Sample_data_row_count | 45101
| | |
|
GSM629892 | GPL1261 |
|
Sca1-MALT1_splenic lymphoma_4
|
frozen tissue, splenic lymphoma, Sca1-MALT1
|
tissue: spleen
genotype/variation: Sca1-MALT1
disease status: lymphoma
|
|
| Sample_geo_accession | GSM629892
| | Sample_status | Public on Jul 10 2012
| | Sample_submission_date | Nov 28 2010
| | Sample_last_update_date | Jul 10 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | Frozen biopsies from spleen of WT or Sca1-MALT1 transgenic mice.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The cells were harvested with TRIzol Reagent (Invitrogen) and the RNA was extracted according to the manufacturer's instructions. As a last step of the extraction procedure, the RNA was purified with the RNeasy Mini-kit (Qiagen, Hilden, Germany).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | The cDNA was prepared from 5 microg total RNA using the One –Cycle cDNA Synthesis kit from Affymetrix. This cDNA was used for synthezising the cRNA using the IVT labeling kit (Affimetrix). The synthezised cRNA was purified with the GeneChip Sample Cleanup Module (Affimetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 microg of cRNA were hybridized to the Affymetrix Mouse_430_2 chip according to the protocols provided by the manufacturer.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 from Affymetrix.
| | Sample_data_processing | RMA (R/Bioconductor processing)
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Victor,,Segura
| | Sample_contact_email | vsegura@unav.es
| | Sample_contact_department | Unit of Proteomics, Genomics and Bioinformatics
| | Sample_contact_institute | FIMA
| | Sample_contact_address | Avda. Pío XII, 55
| | Sample_contact_city | Pamplona
| | Sample_contact_state | Navarra
| | Sample_contact_zip/postal_code | 31008
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM629nnn/GSM629892/suppl/GSM629892.CEL.gz
| | Sample_series_id | GSE25637
| | Sample_series_id | GSE25639
| | Sample_data_row_count | 45101
| | |
|
GSM629893 | GPL1261 |
|
Sca1-MALT1_splenic lymphoma_5
|
frozen tissue, splenic lymphoma, Sca1-MALT1
|
tissue: spleen
genotype/variation: Sca1-MALT1
disease status: lymphoma
|
|
| Sample_geo_accession | GSM629893
| | Sample_status | Public on Jul 10 2012
| | Sample_submission_date | Nov 28 2010
| | Sample_last_update_date | Jul 10 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | Frozen biopsies from spleen of WT or Sca1-MALT1 transgenic mice.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The cells were harvested with TRIzol Reagent (Invitrogen) and the RNA was extracted according to the manufacturer's instructions. As a last step of the extraction procedure, the RNA was purified with the RNeasy Mini-kit (Qiagen, Hilden, Germany).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | The cDNA was prepared from 5 microg total RNA using the One –Cycle cDNA Synthesis kit from Affymetrix. This cDNA was used for synthezising the cRNA using the IVT labeling kit (Affimetrix). The synthezised cRNA was purified with the GeneChip Sample Cleanup Module (Affimetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 microg of cRNA were hybridized to the Affymetrix Mouse_430_2 chip according to the protocols provided by the manufacturer.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 from Affymetrix.
| | Sample_data_processing | RMA (R/Bioconductor processing)
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Victor,,Segura
| | Sample_contact_email | vsegura@unav.es
| | Sample_contact_department | Unit of Proteomics, Genomics and Bioinformatics
| | Sample_contact_institute | FIMA
| | Sample_contact_address | Avda. Pío XII, 55
| | Sample_contact_city | Pamplona
| | Sample_contact_state | Navarra
| | Sample_contact_zip/postal_code | 31008
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM629nnn/GSM629893/suppl/GSM629893.CEL.gz
| | Sample_series_id | GSE25637
| | Sample_series_id | GSE25639
| | Sample_data_row_count | 45101
| | |
|
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