Search results for the GEO ID: GSE25729  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM632001 | GPL1261 |
|
WT littermate1
|
Heart sample1
|
genotype: WT
tissue: Heart
strain: C57BL/6
age: 8-9 weeks
gender: Male
|
TRNA was extracted from heart left ventricle
|
| Sample_geo_accession | GSM632001
| | Sample_status | Public on Dec 25 2012
| | Sample_submission_date | Nov 30 2010
| | Sample_last_update_date | Dec 25 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA (TRNA) was isolated from heart samples utilizing Trizol Reagent (GIBCO/BRL) following the manufacturer's protocol. The quality of TRNA was assessed using the Agilent 2100 Bioanalyzer (version A.02.01S1232, Agilent Technologies). Only RNA with the OD ratio of 1.99-2.0 at 260/280 was used for microarray analysis.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Affymetrix standard protocol
| | Sample_hyb_protocol | Affymetrix standard protocol
| | Sample_scan_protocol | Affymetrix GeneChip Scanner 3000
| | Sample_data_processing | MAS 5.0, signals were scaled to 150
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Sara,,Arab
| | Sample_contact_laboratory | John Coles
| | Sample_contact_department | Cardiology
| | Sample_contact_institute | Hospital for Sick Children
| | Sample_contact_address | 555 University Ave
| | Sample_contact_city | Toronto
| | Sample_contact_state | ONT
| | Sample_contact_zip/postal_code | M5G 1X8
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM632nnn/GSM632001/suppl/GSM632001_MOE4302_030509H_JC1_794_.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM632nnn/GSM632001/suppl/GSM632001_MOE4302_030509H_JC1_794_.mas5.CHP.gz
| | Sample_series_id | GSE25729
| | Sample_data_row_count | 45101
| | |
|
GSM632002 | GPL1261 |
|
ILKS343D
|
Heart sample2
|
genotype: ILKS343D Tg
tissue: Heart
strain: C57BL/6
age: 8-9 weeks
gender: Female
|
TRNA was extracted from heart
|
| Sample_geo_accession | GSM632002
| | Sample_status | Public on Dec 25 2012
| | Sample_submission_date | Nov 30 2010
| | Sample_last_update_date | Dec 25 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA (TRNA) was isolated from heart samples utilizing Trizol Reagent (GIBCO/BRL) following the manufacturer's protocol. The quality of TRNA was assessed using the Agilent 2100 Bioanalyzer (version A.02.01S1232, Agilent Technologies). Only RNA with the OD ratio of 1.99-2.0 at 260/280 was used for microarray analysis.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Affymetrix standard protocol
| | Sample_hyb_protocol | Affymetrix standard protocol
| | Sample_scan_protocol | Affymetrix GeneChip Scanner 3000
| | Sample_data_processing | MAS 5.0, signals were scaled to 150
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Sara,,Arab
| | Sample_contact_laboratory | John Coles
| | Sample_contact_department | Cardiology
| | Sample_contact_institute | Hospital for Sick Children
| | Sample_contact_address | 555 University Ave
| | Sample_contact_city | Toronto
| | Sample_contact_state | ONT
| | Sample_contact_zip/postal_code | M5G 1X8
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM632nnn/GSM632002/suppl/GSM632002_MOE4302_030509H_JC2_795_.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM632nnn/GSM632002/suppl/GSM632002_MOE4302_030509H_JC2_795_.mas5.CHP.gz
| | Sample_series_id | GSE25729
| | Sample_data_row_count | 45101
| | |
|
GSM632003 | GPL1261 |
|
WT littermate2
|
Heart sample3
|
genotype: WT
tissue: Heart
strain: C57BL/6
age: 8-9 weeks
gender: Female
|
TRNA was extracted from heart
|
| Sample_geo_accession | GSM632003
| | Sample_status | Public on Dec 25 2012
| | Sample_submission_date | Nov 30 2010
| | Sample_last_update_date | Dec 25 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA (TRNA) was isolated from heart samples utilizing Trizol Reagent (GIBCO/BRL) following the manufacturer's protocol. The quality of TRNA was assessed using the Agilent 2100 Bioanalyzer (version A.02.01S1232, Agilent Technologies). Only RNA with the OD ratio of 1.99-2.0 at 260/280 was used for microarray analysis.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Affymetrix standard protocol
| | Sample_hyb_protocol | Affymetrix standard protocol
| | Sample_scan_protocol | Affymetrix GeneChip Scanner 3000
| | Sample_data_processing | MAS 5.0, signals were scaled to 150
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Sara,,Arab
| | Sample_contact_laboratory | John Coles
| | Sample_contact_department | Cardiology
| | Sample_contact_institute | Hospital for Sick Children
| | Sample_contact_address | 555 University Ave
| | Sample_contact_city | Toronto
| | Sample_contact_state | ONT
| | Sample_contact_zip/postal_code | M5G 1X8
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM632nnn/GSM632003/suppl/GSM632003_MOE4302_030509H_JC3_796_.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM632nnn/GSM632003/suppl/GSM632003_MOE4302_030509H_JC3_796_.mas5.CHP.gz
| | Sample_series_id | GSE25729
| | Sample_data_row_count | 45101
| | |
|
GSM632004 | GPL1261 |
|
WT littermat3
|
Heart sample6
|
genotype: WT
tissue: Heart
strain: C57BL/6
age: 8-9 weeks
gender: Female
|
TRNA was extracted from heart
|
| Sample_geo_accession | GSM632004
| | Sample_status | Public on Dec 25 2012
| | Sample_submission_date | Nov 30 2010
| | Sample_last_update_date | Dec 25 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA (TRNA) was isolated from heart samples utilizing Trizol Reagent (GIBCO/BRL) following the manufacturer's protocol. The quality of TRNA was assessed using the Agilent 2100 Bioanalyzer (version A.02.01S1232, Agilent Technologies). Only RNA with the OD ratio of 1.99-2.0 at 260/280 was used for microarray analysis.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Affymetrix standard protocol
| | Sample_hyb_protocol | Affymetrix standard protocol
| | Sample_scan_protocol | Affymetrix GeneChip Scanner 3000
| | Sample_data_processing | MAS 5.0, signals were scaled to 150
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Sara,,Arab
| | Sample_contact_laboratory | John Coles
| | Sample_contact_department | Cardiology
| | Sample_contact_institute | Hospital for Sick Children
| | Sample_contact_address | 555 University Ave
| | Sample_contact_city | Toronto
| | Sample_contact_state | ONT
| | Sample_contact_zip/postal_code | M5G 1X8
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM632nnn/GSM632004/suppl/GSM632004_MOE4302_030509H_JC6_845_.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM632nnn/GSM632004/suppl/GSM632004_MOE4302_030509H_JC6_845_.mas5.CHP.gz
| | Sample_series_id | GSE25729
| | Sample_data_row_count | 45101
| | |
|
GSM632005 | GPL1261 |
|
ILKR211A1
|
Heart sample7
|
genotype: ILKR211A Tg
tissue: Heart
strain: C57BL/6
age: 8-9 weeks
gender: Female
|
TRNA was extracted from heart
|
| Sample_geo_accession | GSM632005
| | Sample_status | Public on Dec 25 2012
| | Sample_submission_date | Nov 30 2010
| | Sample_last_update_date | Dec 25 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA (TRNA) was isolated from heart samples utilizing Trizol Reagent (GIBCO/BRL) following the manufacturer's protocol. The quality of TRNA was assessed using the Agilent 2100 Bioanalyzer (version A.02.01S1232, Agilent Technologies). Only RNA with the OD ratio of 1.99-2.0 at 260/280 was used for microarray analysis.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Affymetrix standard protocol
| | Sample_hyb_protocol | Affymetrix standard protocol
| | Sample_scan_protocol | Affymetrix GeneChip Scanner 3000
| | Sample_data_processing | MAS 5.0, signals were scaled to 150
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Sara,,Arab
| | Sample_contact_laboratory | John Coles
| | Sample_contact_department | Cardiology
| | Sample_contact_institute | Hospital for Sick Children
| | Sample_contact_address | 555 University Ave
| | Sample_contact_city | Toronto
| | Sample_contact_state | ONT
| | Sample_contact_zip/postal_code | M5G 1X8
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM632nnn/GSM632005/suppl/GSM632005_MOE4302_030509H_JC7_050_.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM632nnn/GSM632005/suppl/GSM632005_MOE4302_030509H_JC7_050_.mas5.CHP.gz
| | Sample_series_id | GSE25729
| | Sample_data_row_count | 45101
| | |
|
GSM632006 | GPL1261 |
|
ILKR211A2
|
Heart sample9
|
genotype: ILKR211A Tg
tissue: Heart
strain: C57BL/6
age: 8-9 weeks
gender: Female
|
TRNA was extracted from heart
|
| Sample_geo_accession | GSM632006
| | Sample_status | Public on Dec 25 2012
| | Sample_submission_date | Nov 30 2010
| | Sample_last_update_date | Dec 25 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA (TRNA) was isolated from heart samples utilizing Trizol Reagent (GIBCO/BRL) following the manufacturer's protocol. The quality of TRNA was assessed using the Agilent 2100 Bioanalyzer (version A.02.01S1232, Agilent Technologies). Only RNA with the OD ratio of 1.99-2.0 at 260/280 was used for microarray analysis.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Affymetrix standard protocol
| | Sample_hyb_protocol | Affymetrix standard protocol
| | Sample_scan_protocol | Affymetrix GeneChip Scanner 3000
| | Sample_data_processing | MAS 5.0, signals were scaled to 150
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Sara,,Arab
| | Sample_contact_laboratory | John Coles
| | Sample_contact_department | Cardiology
| | Sample_contact_institute | Hospital for Sick Children
| | Sample_contact_address | 555 University Ave
| | Sample_contact_city | Toronto
| | Sample_contact_state | ONT
| | Sample_contact_zip/postal_code | M5G 1X8
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM632nnn/GSM632006/suppl/GSM632006_MOE4302_030509H_JC9_G5021_.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM632nnn/GSM632006/suppl/GSM632006_MOE4302_030509H_JC9_G5021_.mas5.CHP.gz
| | Sample_series_id | GSE25729
| | Sample_data_row_count | 45101
| | |
|
GSM632007 | GPL1261 |
|
WT Littermate2
|
Heart sample 10
|
genotype: WT
tissue: Heart
strain: C57BL/6
age: 8-9 weeks
gender: Female
|
TRNA was extracted from heart
|
| Sample_geo_accession | GSM632007
| | Sample_status | Public on Dec 25 2012
| | Sample_submission_date | Nov 30 2010
| | Sample_last_update_date | Dec 25 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA (TRNA) was isolated from heart samples utilizing Trizol Reagent (GIBCO/BRL) following the manufacturer's protocol. The quality of TRNA was assessed using the Agilent 2100 Bioanalyzer (version A.02.01S1232, Agilent Technologies). Only RNA with the OD ratio of 1.99-2.0 at 260/280 was used for microarray analysis.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Affymetrix standard protocol
| | Sample_hyb_protocol | Affymetrix standard protocol
| | Sample_scan_protocol | Affymetrix GeneChip Scanner 3000
| | Sample_data_processing | MAS 5.0, signals were scaled to 150
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Sara,,Arab
| | Sample_contact_laboratory | John Coles
| | Sample_contact_department | Cardiology
| | Sample_contact_institute | Hospital for Sick Children
| | Sample_contact_address | 555 University Ave
| | Sample_contact_city | Toronto
| | Sample_contact_state | ONT
| | Sample_contact_zip/postal_code | M5G 1X8
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM632nnn/GSM632007/suppl/GSM632007_MOE4302_030509H_JC10_G5022_.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM632nnn/GSM632007/suppl/GSM632007_MOE4302_030509H_JC10_G5022_.mas5.CHP.gz
| | Sample_series_id | GSE25729
| | Sample_data_row_count | 45101
| | |
|
GSM632008 | GPL1261 |
|
WT Littermate3
|
Heart sample 11
|
genotype: WT
tissue: Heart
strain: C57BL/6
age: 8-9 weeks
gender: Female
|
TRNA was extracted from heart
|
| Sample_geo_accession | GSM632008
| | Sample_status | Public on Dec 25 2012
| | Sample_submission_date | Nov 30 2010
| | Sample_last_update_date | Dec 25 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA (TRNA) was isolated from heart samples utilizing Trizol Reagent (GIBCO/BRL) following the manufacturer's protocol. The quality of TRNA was assessed using the Agilent 2100 Bioanalyzer (version A.02.01S1232, Agilent Technologies). Only RNA with the OD ratio of 1.99-2.0 at 260/280 was used for microarray analysis.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Affymetrix standard protocol
| | Sample_hyb_protocol | Affymetrix standard protocol
| | Sample_scan_protocol | Affymetrix GeneChip Scanner 3000
| | Sample_data_processing | MAS 5.0, signals were scaled to 150
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Sara,,Arab
| | Sample_contact_laboratory | John Coles
| | Sample_contact_department | Cardiology
| | Sample_contact_institute | Hospital for Sick Children
| | Sample_contact_address | 555 University Ave
| | Sample_contact_city | Toronto
| | Sample_contact_state | ONT
| | Sample_contact_zip/postal_code | M5G 1X8
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM632nnn/GSM632008/suppl/GSM632008_MOE4302_030509H_JC11_G5023_.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM632nnn/GSM632008/suppl/GSM632008_MOE4302_030509H_JC11_G5023_.mas5.CHP.gz
| | Sample_series_id | GSE25729
| | Sample_data_row_count | 45101
| | |
|
GSM632009 | GPL1261 |
|
ILKR211A3
|
Heart sample 12
|
genotype: ILKR211A Tg
tissue: Heart
strain: C57BL/6
age: 8-9 weeks
gender: Female
|
TRNA was extracted from heart
|
| Sample_geo_accession | GSM632009
| | Sample_status | Public on Dec 25 2012
| | Sample_submission_date | Nov 30 2010
| | Sample_last_update_date | Dec 25 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA (TRNA) was isolated from heart samples utilizing Trizol Reagent (GIBCO/BRL) following the manufacturer's protocol. The quality of TRNA was assessed using the Agilent 2100 Bioanalyzer (version A.02.01S1232, Agilent Technologies). Only RNA with the OD ratio of 1.99-2.0 at 260/280 was used for microarray analysis.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Affymetrix standard protocol
| | Sample_hyb_protocol | Affymetrix standard protocol
| | Sample_scan_protocol | Affymetrix GeneChip Scanner 3000
| | Sample_data_processing | MAS 5.0, signals were scaled to 150
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Sara,,Arab
| | Sample_contact_laboratory | John Coles
| | Sample_contact_department | Cardiology
| | Sample_contact_institute | Hospital for Sick Children
| | Sample_contact_address | 555 University Ave
| | Sample_contact_city | Toronto
| | Sample_contact_state | ONT
| | Sample_contact_zip/postal_code | M5G 1X8
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM632nnn/GSM632009/suppl/GSM632009_MOE4302_030509H_JC12_G5024_.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM632nnn/GSM632009/suppl/GSM632009_MOE4302_030509H_JC12_G5024_.mas5.CHP.gz
| | Sample_series_id | GSE25729
| | Sample_data_row_count | 45101
| | |
|
GSM632010 | GPL1261 |
|
WT Littermate1
|
Heart sample8
|
genotype: WT
tissue: Heart
strain: C57BL/6
age: 8-9 weeks
gender: Female
|
RNA was extracted from left the heart
|
| Sample_geo_accession | GSM632010
| | Sample_status | Public on Dec 25 2012
| | Sample_submission_date | Nov 30 2010
| | Sample_last_update_date | Dec 25 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Extract Protocol Extract Protocol Extraction protocol Total RNA (TRNA) was isolated from the heart samples utilizing Trizol Reagent (GIBCO/BRL) following the manufacturer's protocol. The quality of TRNA was assessed using the Agilent 2100 Bioanalyzer (version A.02.01S1232, Agilent Technologies). Only RNA with the OD ratio of 1.99-2.0 at 260/280 was used for microarray analysis.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Affymetrix standard protocol
| | Sample_hyb_protocol | Affymetrix standard protocol
| | Sample_scan_protocol | Affymetrix GeneChip Scanner 3000
| | Sample_data_processing | MAS 5.0, signals were scaled to 150
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Sara,,Arab
| | Sample_contact_laboratory | John Coles
| | Sample_contact_department | Cardiology
| | Sample_contact_institute | Hospital for Sick Children
| | Sample_contact_address | 555 University Ave
| | Sample_contact_city | Toronto
| | Sample_contact_state | ONT
| | Sample_contact_zip/postal_code | M5G 1X8
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM632nnn/GSM632010/suppl/GSM632010_1_MOE4302_030509H_JC8_051_.mas5.CHP.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM632nnn/GSM632010/suppl/GSM632010_MOE4302_030509H_JC8_051_.CEL.gz
| | Sample_series_id | GSE25729
| | Sample_data_row_count | 45101
| | |
|
GSM632011 | GPL1261 |
|
ILKS343D2
|
Heart sample4
|
genotype: ILKS343D Tg
tissue: Heart
strain: C57BL/6
age: 8-9 weeks
gender: Female
|
RNA was extracted from left the heart
|
| Sample_geo_accession | GSM632011
| | Sample_status | Public on Dec 25 2012
| | Sample_submission_date | Nov 30 2010
| | Sample_last_update_date | Dec 25 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Extract Protocol Extract Protocol Extraction protocol Total RNA (TRNA) was isolated from the heart samples utilizing Trizol Reagent (GIBCO/BRL) following the manufacturer's protocol. The quality of TRNA was assessed using the Agilent 2100 Bioanalyzer (version A.02.01S1232, Agilent Technologies). Only RNA with the OD ratio of 1.99-2.0 at 260/280 was used for microarray analysis.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Affymetrix standard protocol
| | Sample_hyb_protocol | Affymetrix standard protocol
| | Sample_scan_protocol | Affymetrix GeneChip Scanner 3000
| | Sample_data_processing | MAS 5.0, signals were scaled to 150
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Sara,,Arab
| | Sample_contact_laboratory | John Coles
| | Sample_contact_department | Cardiology
| | Sample_contact_institute | Hospital for Sick Children
| | Sample_contact_address | 555 University Ave
| | Sample_contact_city | Toronto
| | Sample_contact_state | ONT
| | Sample_contact_zip/postal_code | M5G 1X8
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM632nnn/GSM632011/suppl/GSM632011_1_MOE4302_030509H_JC4_797_.mas5.CHP.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM632nnn/GSM632011/suppl/GSM632011_MOE4302_030509H_JC4_797_.CEL.gz
| | Sample_series_id | GSE25729
| | Sample_data_row_count | 45101
| | |
|
GSM632012 | GPL1261 |
|
ILKS343D3
|
Heart sample5
|
genotype: ILKS343D Tg
tissue: Heart
strain: C57BL/6
age: 8-9 weeks
gender: Female
|
RNA was extracted from the heart
|
| Sample_geo_accession | GSM632012
| | Sample_status | Public on Dec 25 2012
| | Sample_submission_date | Nov 30 2010
| | Sample_last_update_date | Dec 25 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Extract Protocol Extract Protocol Extraction protocol Total RNA (TRNA) was isolated from the heart samples utilizing Trizol Reagent (GIBCO/BRL) following the manufacturer's protocol. The quality of TRNA was assessed using the Agilent 2100 Bioanalyzer (version A.02.01S1232, Agilent Technologies). Only RNA with the OD ratio of 1.99-2.0 at 260/280 was used for microarray analysis.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Affymetrix standard protocol
| | Sample_hyb_protocol | Affymetrix standard protocol
| | Sample_scan_protocol | Affymetrix GeneChip Scanner 3000
| | Sample_data_processing | MAS 5.0, signals were scaled to 150
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Sara,,Arab
| | Sample_contact_laboratory | John Coles
| | Sample_contact_department | Cardiology
| | Sample_contact_institute | Hospital for Sick Children
| | Sample_contact_address | 555 University Ave
| | Sample_contact_city | Toronto
| | Sample_contact_state | ONT
| | Sample_contact_zip/postal_code | M5G 1X8
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM632nnn/GSM632012/suppl/GSM632012_1_MOE4302_030509H_JC5_844_.mas5.CHP.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM632nnn/GSM632012/suppl/GSM632012_MOE4302_030509H_JC5_844_.CEL.gz
| | Sample_series_id | GSE25729
| | Sample_data_row_count | 45101
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