Search results for the GEO ID: GSE25778 |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM634249 | GPL1261 |
|
EGFP-1
|
EGFP expressing mouse lung type II cells
|
strain: C57Bl/6J
age: 8 weeks old
cell type: pulmonary epithelial type II
cell surface marker: EGFP-positive
|
|
Sample_geo_accession | GSM634249
| Sample_status | Public on Dec 03 2010
| Sample_submission_date | Dec 02 2010
| Sample_last_update_date | Dec 02 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted with Qiagen RNeasy kits according to the vendor's recommended protocol
| Sample_label_ch1 | biotin-phycoerythrin-streptavidin
| Sample_label_protocol_ch1 | Total RNA was converted to biotinylated cDNA with kits purchased from NuGEN as recommended by NuGEN
| Sample_hyb_protocol | 3.75 micrograms cDNA hybridized overnight with Affymetrix M430 2.0 array per Affymetrix eukaryotic array protocol except cDNA used instead of cRNA
| Sample_scan_protocol | Biotinylated cDNA labeled with phycoerythrin-streptavidin per Affymetrix staining protocol; Fluorescence detected with Affymetrix Scanner 3000
| Sample_data_processing | GCOS software (Affymetrix) generated cel files from scans; cel files were analyzed by GCRMA normalization and background subtraction with Bioconductor gcrma package
| Sample_platform_id | GPL1261
| Sample_contact_name | Stephen,,Welle
| Sample_contact_email | stephen_welle@urmc.rochester.edu
| Sample_contact_institute | University of Rochester
| Sample_contact_address | 601 Elmwood Avenue
| Sample_contact_city | Rochester
| Sample_contact_state | NY
| Sample_contact_zip/postal_code | 14642
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM634nnn/GSM634249/suppl/GSM634249.CEL.gz
| Sample_series_id | GSE25778
| Sample_data_row_count | 45101
| |
|
GSM634250 | GPL1261 |
|
EGFP-2
|
EGFP expressing mouse lung type II cells
|
strain: C57Bl/6J
age: 8 weeks old
cell type: pulmonary epithelial type II
cell surface marker: EGFP-positive
|
|
Sample_geo_accession | GSM634250
| Sample_status | Public on Dec 03 2010
| Sample_submission_date | Dec 02 2010
| Sample_last_update_date | Dec 02 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted with Qiagen RNeasy kits according to the vendor's recommended protocol
| Sample_label_ch1 | biotin-phycoerythrin-streptavidin
| Sample_label_protocol_ch1 | Total RNA was converted to biotinylated cDNA with kits purchased from NuGEN as recommended by NuGEN
| Sample_hyb_protocol | 3.75 micrograms cDNA hybridized overnight with Affymetrix M430 2.0 array per Affymetrix eukaryotic array protocol except cDNA used instead of cRNA
| Sample_scan_protocol | Biotinylated cDNA labeled with phycoerythrin-streptavidin per Affymetrix staining protocol; Fluorescence detected with Affymetrix Scanner 3000
| Sample_data_processing | GCOS software (Affymetrix) generated cel files from scans; cel files were analyzed by GCRMA normalization and background subtraction with Bioconductor gcrma package
| Sample_platform_id | GPL1261
| Sample_contact_name | Stephen,,Welle
| Sample_contact_email | stephen_welle@urmc.rochester.edu
| Sample_contact_institute | University of Rochester
| Sample_contact_address | 601 Elmwood Avenue
| Sample_contact_city | Rochester
| Sample_contact_state | NY
| Sample_contact_zip/postal_code | 14642
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM634nnn/GSM634250/suppl/GSM634250.CEL.gz
| Sample_series_id | GSE25778
| Sample_data_row_count | 45101
| |
|
GSM634251 | GPL1261 |
|
EGFP-3
|
EGFP expressing mouse lung type II cells
|
strain: C57Bl/6J
age: 8 weeks old
cell type: pulmonary epithelial type II
cell surface marker: EGFP-positive
|
|
Sample_geo_accession | GSM634251
| Sample_status | Public on Dec 03 2010
| Sample_submission_date | Dec 02 2010
| Sample_last_update_date | Dec 02 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted with Qiagen RNeasy kits according to the vendor's recommended protocol
| Sample_label_ch1 | biotin-phycoerythrin-streptavidin
| Sample_label_protocol_ch1 | Total RNA was converted to biotinylated cDNA with kits purchased from NuGEN as recommended by NuGEN
| Sample_hyb_protocol | 3.75 micrograms cDNA hybridized overnight with Affymetrix M430 2.0 array per Affymetrix eukaryotic array protocol except cDNA used instead of cRNA
| Sample_scan_protocol | Biotinylated cDNA labeled with phycoerythrin-streptavidin per Affymetrix staining protocol; Fluorescence detected with Affymetrix Scanner 3000
| Sample_data_processing | GCOS software (Affymetrix) generated cel files from scans; cel files were analyzed by GCRMA normalization and background subtraction with Bioconductor gcrma package
| Sample_platform_id | GPL1261
| Sample_contact_name | Stephen,,Welle
| Sample_contact_email | stephen_welle@urmc.rochester.edu
| Sample_contact_institute | University of Rochester
| Sample_contact_address | 601 Elmwood Avenue
| Sample_contact_city | Rochester
| Sample_contact_state | NY
| Sample_contact_zip/postal_code | 14642
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM634nnn/GSM634251/suppl/GSM634251.CEL.gz
| Sample_series_id | GSE25778
| Sample_data_row_count | 45101
| |
|
GSM634252 | GPL1261 |
|
nonEGFP-1
|
mouse lung type II cells - no EGFP
|
strain: C57Bl/6J
age: 8 weeks old
cell type: pulmonary epithelial type II
cell surface marker: EGFP-negative
|
|
Sample_geo_accession | GSM634252
| Sample_status | Public on Dec 03 2010
| Sample_submission_date | Dec 02 2010
| Sample_last_update_date | Dec 02 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted with Qiagen RNeasy kits according to the vendor's recommended protocol
| Sample_label_ch1 | biotin-phycoerythrin-streptavidin
| Sample_label_protocol_ch1 | Total RNA was converted to biotinylated cDNA with kits purchased from NuGEN as recommended by NuGEN
| Sample_hyb_protocol | 3.75 micrograms cDNA hybridized overnight with Affymetrix M430 2.0 array per Affymetrix eukaryotic array protocol except cDNA used instead of cRNA
| Sample_scan_protocol | Biotinylated cDNA labeled with phycoerythrin-streptavidin per Affymetrix staining protocol; Fluorescence detected with Affymetrix Scanner 3000
| Sample_data_processing | GCOS software (Affymetrix) generated cel files from scans; cel files were analyzed by GCRMA normalization and background subtraction with Bioconductor gcrma package
| Sample_platform_id | GPL1261
| Sample_contact_name | Stephen,,Welle
| Sample_contact_email | stephen_welle@urmc.rochester.edu
| Sample_contact_institute | University of Rochester
| Sample_contact_address | 601 Elmwood Avenue
| Sample_contact_city | Rochester
| Sample_contact_state | NY
| Sample_contact_zip/postal_code | 14642
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM634nnn/GSM634252/suppl/GSM634252.CEL.gz
| Sample_series_id | GSE25778
| Sample_data_row_count | 45101
| |
|
GSM634253 | GPL1261 |
|
nonEGFP-2
|
mouse lung type II cells - no EGFP
|
strain: C57Bl/6J
age: 8 weeks old
cell type: pulmonary epithelial type II
cell surface marker: EGFP-negative
|
|
Sample_geo_accession | GSM634253
| Sample_status | Public on Dec 03 2010
| Sample_submission_date | Dec 02 2010
| Sample_last_update_date | Dec 02 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted with Qiagen RNeasy kits according to the vendor's recommended protocol
| Sample_label_ch1 | biotin-phycoerythrin-streptavidin
| Sample_label_protocol_ch1 | Total RNA was converted to biotinylated cDNA with kits purchased from NuGEN as recommended by NuGEN
| Sample_hyb_protocol | 3.75 micrograms cDNA hybridized overnight with Affymetrix M430 2.0 array per Affymetrix eukaryotic array protocol except cDNA used instead of cRNA
| Sample_scan_protocol | Biotinylated cDNA labeled with phycoerythrin-streptavidin per Affymetrix staining protocol; Fluorescence detected with Affymetrix Scanner 3000
| Sample_data_processing | GCOS software (Affymetrix) generated cel files from scans; cel files were analyzed by GCRMA normalization and background subtraction with Bioconductor gcrma package
| Sample_platform_id | GPL1261
| Sample_contact_name | Stephen,,Welle
| Sample_contact_email | stephen_welle@urmc.rochester.edu
| Sample_contact_institute | University of Rochester
| Sample_contact_address | 601 Elmwood Avenue
| Sample_contact_city | Rochester
| Sample_contact_state | NY
| Sample_contact_zip/postal_code | 14642
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM634nnn/GSM634253/suppl/GSM634253.CEL.gz
| Sample_series_id | GSE25778
| Sample_data_row_count | 45101
| |
|
GSM634254 | GPL1261 |
|
nonEGFP-3
|
mouse lung type II cells - no EGFP
|
strain: C57Bl/6J
age: 8 weeks old
cell type: pulmonary epithelial type II
cell surface marker: EGFP-negative
|
|
Sample_geo_accession | GSM634254
| Sample_status | Public on Dec 03 2010
| Sample_submission_date | Dec 02 2010
| Sample_last_update_date | Dec 02 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted with Qiagen RNeasy kits according to the vendor's recommended protocol
| Sample_label_ch1 | biotin-phycoerythrin-streptavidin
| Sample_label_protocol_ch1 | Total RNA was converted to biotinylated cDNA with kits purchased from NuGEN as recommended by NuGEN
| Sample_hyb_protocol | 3.75 micrograms cDNA hybridized overnight with Affymetrix M430 2.0 array per Affymetrix eukaryotic array protocol except cDNA used instead of cRNA
| Sample_scan_protocol | Biotinylated cDNA labeled with phycoerythrin-streptavidin per Affymetrix staining protocol; Fluorescence detected with Affymetrix Scanner 3000
| Sample_data_processing | GCOS software (Affymetrix) generated cel files from scans; cel files were analyzed by GCRMA normalization and background subtraction with Bioconductor gcrma package
| Sample_platform_id | GPL1261
| Sample_contact_name | Stephen,,Welle
| Sample_contact_email | stephen_welle@urmc.rochester.edu
| Sample_contact_institute | University of Rochester
| Sample_contact_address | 601 Elmwood Avenue
| Sample_contact_city | Rochester
| Sample_contact_state | NY
| Sample_contact_zip/postal_code | 14642
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM634nnn/GSM634254/suppl/GSM634254.CEL.gz
| Sample_series_id | GSE25778
| Sample_data_row_count | 45101
| |
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