Search results for the GEO ID: GSE25825  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM634483 | GPL1261 |
|
E2F1-/-2+/+3f/f (control), rep1
|
Cd11b + myeloid cells, control
|
background strain: mixed (FVB+ C57BL6)
genotype: E2F1-/-2+/+3f/f
age: 8 weeks
tissue: bone marrow
cell type: Cd11b + myeloid cells
|
1a
Gene expression data from Cd11B + myeloid cells.
|
| Sample_geo_accession | GSM634483
| | Sample_status | Public on Dec 03 2010
| | Sample_submission_date | Dec 02 2010
| | Sample_last_update_date | Sep 15 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Eight-week-old mice received five injections of 250ug of polyinosine-polycytidine (pIpC) every alternate day and mice were sacrificed 24 hrs after the last injection.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2.5 ug total RNA.
| | Sample_hyb_protocol | Following fragmentation, 1 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix Mouse 430.2 GeneChip Arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | Gene Chips were scanned using the Affy GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed with RMAExpress (version 1.0 beta 4) and normalized using Quantile Normalization. Robust multi-array analysis (RMA) was performed with default parameter settings and the output was log transformed.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Prashant,,Trikha
| | Sample_contact_email | prashant.trikha@osumc.edu
| | Sample_contact_laboratory | Leone
| | Sample_contact_department | HCG
| | Sample_contact_institute | Ohio State University
| | Sample_contact_address | 460 W 12 Avenue
| | Sample_contact_city | Columbus
| | Sample_contact_state | OH
| | Sample_contact_zip/postal_code | 43212
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM634nnn/GSM634483/suppl/GSM634483.CEL.gz
| | Sample_series_id | GSE25825
| | Sample_data_row_count | 45101
| | |
|
GSM634484 | GPL1261 |
|
E2F1-/-2+/+3f/f (control), rep2
|
Cd11b + myeloid cells, control
|
background strain: mixed (FVB+ C57BL6)
genotype: E2F1-/-2+/+3f/f
age: 8 weeks
tissue: bone marrow
cell type: Cd11b + myeloid cells
|
1b
Gene expression data from Cd11B + myeloid cells.
|
| Sample_geo_accession | GSM634484
| | Sample_status | Public on Dec 03 2010
| | Sample_submission_date | Dec 02 2010
| | Sample_last_update_date | Sep 15 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Eight-week-old mice received five injections of 250ug of polyinosine-polycytidine (pIpC) every alternate day and mice were sacrificed 24 hrs after the last injection.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2.5 ug total RNA.
| | Sample_hyb_protocol | Following fragmentation, 1 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix Mouse 430.2 GeneChip Arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | Gene Chips were scanned using the Affy GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed with RMAExpress (version 1.0 beta 4) and normalized using Quantile Normalization. Robust multi-array analysis (RMA) was performed with default parameter settings and the output was log transformed.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Prashant,,Trikha
| | Sample_contact_email | prashant.trikha@osumc.edu
| | Sample_contact_laboratory | Leone
| | Sample_contact_department | HCG
| | Sample_contact_institute | Ohio State University
| | Sample_contact_address | 460 W 12 Avenue
| | Sample_contact_city | Columbus
| | Sample_contact_state | OH
| | Sample_contact_zip/postal_code | 43212
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM634nnn/GSM634484/suppl/GSM634484.CEL.gz
| | Sample_series_id | GSE25825
| | Sample_data_row_count | 45101
| | |
|
GSM634485 | GPL1261 |
|
E2F1-/-2+/+3f/f (control), rep3
|
Cd11b + myeloid cells, control
|
background strain: mixed (FVB+ C57BL6)
genotype: E2F1-/-2+/+3f/f
age: 8 weeks
tissue: bone marrow
cell type: Cd11b + myeloid cells
|
i1
Gene expression data from Cd11B + myeloid cells.
|
| Sample_geo_accession | GSM634485
| | Sample_status | Public on Dec 03 2010
| | Sample_submission_date | Dec 02 2010
| | Sample_last_update_date | Sep 15 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Eight-week-old mice received five injections of 250ug of polyinosine-polycytidine (pIpC) every alternate day and mice were sacrificed 24 hrs after the last injection.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2.5 ug total RNA.
| | Sample_hyb_protocol | Following fragmentation, 1 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix Mouse 430.2 GeneChip Arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | Gene Chips were scanned using the Affy GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed with RMAExpress (version 1.0 beta 4) and normalized using Quantile Normalization. Robust multi-array analysis (RMA) was performed with default parameter settings and the output was log transformed.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Prashant,,Trikha
| | Sample_contact_email | prashant.trikha@osumc.edu
| | Sample_contact_laboratory | Leone
| | Sample_contact_department | HCG
| | Sample_contact_institute | Ohio State University
| | Sample_contact_address | 460 W 12 Avenue
| | Sample_contact_city | Columbus
| | Sample_contact_state | OH
| | Sample_contact_zip/postal_code | 43212
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM634nnn/GSM634485/suppl/GSM634485.CEL.gz
| | Sample_series_id | GSE25825
| | Sample_data_row_count | 45101
| | |
|
GSM634486 | GPL1261 |
|
E2F1-/-2+/+3f/f (control), rep4
|
Cd11b + myeloid cells, control
|
background strain: mixed (FVB+ C57BL6)
genotype: E2F1-/-2+/+3f/f
age: 8 weeks
tissue: bone marrow
cell type: Cd11b + myeloid cells
|
H11
Gene expression data from Cd11B + myeloid cells.
|
| Sample_geo_accession | GSM634486
| | Sample_status | Public on Dec 03 2010
| | Sample_submission_date | Dec 02 2010
| | Sample_last_update_date | Sep 15 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Eight-week-old mice received five injections of 250ug of polyinosine-polycytidine (pIpC) every alternate day and mice were sacrificed 24 hrs after the last injection.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2.5 ug total RNA.
| | Sample_hyb_protocol | Following fragmentation, 1 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix Mouse 430.2 GeneChip Arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | Gene Chips were scanned using the Affy GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed with RMAExpress (version 1.0 beta 4) and normalized using Quantile Normalization. Robust multi-array analysis (RMA) was performed with default parameter settings and the output was log transformed.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Prashant,,Trikha
| | Sample_contact_email | prashant.trikha@osumc.edu
| | Sample_contact_laboratory | Leone
| | Sample_contact_department | HCG
| | Sample_contact_institute | Ohio State University
| | Sample_contact_address | 460 W 12 Avenue
| | Sample_contact_city | Columbus
| | Sample_contact_state | OH
| | Sample_contact_zip/postal_code | 43212
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM634nnn/GSM634486/suppl/GSM634486.CEL.gz
| | Sample_series_id | GSE25825
| | Sample_data_row_count | 45101
| | |
|
GSM634487 | GPL1261 |
|
Mxcre;E2F1-/-2-/-3f/f (experimental), rep1
|
Cd11b + myeloid cells, experimental
|
background strain: mixed (FVB+ C57BL6)
genotype: Mxcre;E2F1-/-2-/-3f/f
age: 8 weeks
tissue: bone marrow
cell type: Cd11b + myeloid cells
|
3a
Gene expression data from Cd11B + myeloid cells.
|
| Sample_geo_accession | GSM634487
| | Sample_status | Public on Dec 03 2010
| | Sample_submission_date | Dec 02 2010
| | Sample_last_update_date | Sep 15 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Eight-week-old mice received five injections of 250ug of polyinosine-polycytidine (pIpC) every alternate day and mice were sacrificed 24 hrs after the last injection.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2.5 ug total RNA.
| | Sample_hyb_protocol | Following fragmentation, 1 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix Mouse 430.2 GeneChip Arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | Gene Chips were scanned using the Affy GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed with RMAExpress (version 1.0 beta 4) and normalized using Quantile Normalization. Robust multi-array analysis (RMA) was performed with default parameter settings and the output was log transformed.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Prashant,,Trikha
| | Sample_contact_email | prashant.trikha@osumc.edu
| | Sample_contact_laboratory | Leone
| | Sample_contact_department | HCG
| | Sample_contact_institute | Ohio State University
| | Sample_contact_address | 460 W 12 Avenue
| | Sample_contact_city | Columbus
| | Sample_contact_state | OH
| | Sample_contact_zip/postal_code | 43212
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM634nnn/GSM634487/suppl/GSM634487.CEL.gz
| | Sample_series_id | GSE25825
| | Sample_data_row_count | 45101
| | |
|
GSM634488 | GPL1261 |
|
Mxcre;E2F1-/-2-/-3f/f (experimental), rep2
|
Cd11b + myeloid cells, experimental
|
background strain: mixed (FVB+ C57BL6)
genotype: Mxcre;E2F1-/-2-/-3f/f
age: 8 weeks
tissue: bone marrow
cell type: Cd11b + myeloid cells
|
3b
Gene expression data from Cd11B + myeloid cells.
|
| Sample_geo_accession | GSM634488
| | Sample_status | Public on Dec 03 2010
| | Sample_submission_date | Dec 02 2010
| | Sample_last_update_date | Sep 15 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Eight-week-old mice received five injections of 250ug of polyinosine-polycytidine (pIpC) every alternate day and mice were sacrificed 24 hrs after the last injection.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2.5 ug total RNA.
| | Sample_hyb_protocol | Following fragmentation, 1 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix Mouse 430.2 GeneChip Arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | Gene Chips were scanned using the Affy GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed with RMAExpress (version 1.0 beta 4) and normalized using Quantile Normalization. Robust multi-array analysis (RMA) was performed with default parameter settings and the output was log transformed.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Prashant,,Trikha
| | Sample_contact_email | prashant.trikha@osumc.edu
| | Sample_contact_laboratory | Leone
| | Sample_contact_department | HCG
| | Sample_contact_institute | Ohio State University
| | Sample_contact_address | 460 W 12 Avenue
| | Sample_contact_city | Columbus
| | Sample_contact_state | OH
| | Sample_contact_zip/postal_code | 43212
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM634nnn/GSM634488/suppl/GSM634488.CEL.gz
| | Sample_series_id | GSE25825
| | Sample_data_row_count | 45101
| | |
|
GSM634489 | GPL1261 |
|
Mxcre;E2F1-/-2-/-3f/f (experimental), rep3
|
Cd11b + myeloid cells, experimental
|
background strain: mixed (FVB+ C57BL6)
genotype: Mxcre;E2F1-/-2-/-3f/f
age: 8 weeks
tissue: bone marrow
cell type: Cd11b + myeloid cells
|
F4
Gene expression data from Cd11B + myeloid cells.
|
| Sample_geo_accession | GSM634489
| | Sample_status | Public on Dec 03 2010
| | Sample_submission_date | Dec 02 2010
| | Sample_last_update_date | Sep 15 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Eight-week-old mice received five injections of 250ug of polyinosine-polycytidine (pIpC) every alternate day and mice were sacrificed 24 hrs after the last injection.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2.5 ug total RNA.
| | Sample_hyb_protocol | Following fragmentation, 1 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix Mouse 430.2 GeneChip Arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | Gene Chips were scanned using the Affy GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed with RMAExpress (version 1.0 beta 4) and normalized using Quantile Normalization. Robust multi-array analysis (RMA) was performed with default parameter settings and the output was log transformed.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Prashant,,Trikha
| | Sample_contact_email | prashant.trikha@osumc.edu
| | Sample_contact_laboratory | Leone
| | Sample_contact_department | HCG
| | Sample_contact_institute | Ohio State University
| | Sample_contact_address | 460 W 12 Avenue
| | Sample_contact_city | Columbus
| | Sample_contact_state | OH
| | Sample_contact_zip/postal_code | 43212
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM634nnn/GSM634489/suppl/GSM634489.CEL.gz
| | Sample_series_id | GSE25825
| | Sample_data_row_count | 45101
| | |
|
GSM634490 | GPL1261 |
|
Mxcre;E2F1-/-2-/-3f/f (experimental), rep4
|
Cd11b + myeloid cells, experimental
|
background strain: mixed (FVB+ C57BL6)
genotype: Mxcre;E2F1-/-2-/-3f/f
age: 8 weeks
tissue: bone marrow
cell type: Cd11b + myeloid cells
|
H10
Gene expression data from Cd11B + myeloid cells.
|
| Sample_geo_accession | GSM634490
| | Sample_status | Public on Dec 03 2010
| | Sample_submission_date | Dec 02 2010
| | Sample_last_update_date | Sep 15 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Eight-week-old mice received five injections of 250ug of polyinosine-polycytidine (pIpC) every alternate day and mice were sacrificed 24 hrs after the last injection.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2.5 ug total RNA.
| | Sample_hyb_protocol | Following fragmentation, 1 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix Mouse 430.2 GeneChip Arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | Gene Chips were scanned using the Affy GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed with RMAExpress (version 1.0 beta 4) and normalized using Quantile Normalization. Robust multi-array analysis (RMA) was performed with default parameter settings and the output was log transformed.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Prashant,,Trikha
| | Sample_contact_email | prashant.trikha@osumc.edu
| | Sample_contact_laboratory | Leone
| | Sample_contact_department | HCG
| | Sample_contact_institute | Ohio State University
| | Sample_contact_address | 460 W 12 Avenue
| | Sample_contact_city | Columbus
| | Sample_contact_state | OH
| | Sample_contact_zip/postal_code | 43212
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM634nnn/GSM634490/suppl/GSM634490.CEL.gz
| | Sample_series_id | GSE25825
| | Sample_data_row_count | 45101
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