Search results for the GEO ID: GSE25828  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM634501 | GPL1261 |
|
2826
|
KrasG12D Pten L/+ PDEC
|
strain: FVB/C57B6 mixed backgroud
cell type: primary KrasG12D Pten L/+ pancreatic ductal epithelial cells, P4
genotype/variation: Pdx1-Cre;LSL-KrasG12D L/+;Pten L/+
|
|
| Sample_geo_accession | GSM634501
| | Sample_status | Public on Sep 01 2011
| | Sample_submission_date | Dec 02 2010
| | Sample_last_update_date | Sep 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA followed by Rneasy column cleanup was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Mouse Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The software used was Expression Console from Affimatrix and normalization algorithm used was MAS5.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Haoqiang,,Ying
| | Sample_contact_email | haoqiang_ying@dfci.harvard.edu
| | Sample_contact_phone | 617-582-7978
| | Sample_contact_fax | 617-632-6069
| | Sample_contact_laboratory | Ronald DePinho
| | Sample_contact_department | Medical Oncology
| | Sample_contact_institute | Dana-Farber Cancer Institute
| | Sample_contact_address | 44 Binney St.
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM634nnn/GSM634501/suppl/GSM634501.CEL.gz
| | Sample_series_id | GSE25828
| | Sample_data_row_count | 45037
| | |
|
GSM634502 | GPL1261 |
|
2880
|
KrasG12D Pten L/+ PDEC
|
strain: FVB/C57B6 mixed backgroud
cell type: primary KrasG12D Pten L/+ pancreatic ductal epithelial cells, P4
genotype/variation: Pdx1-Cre;LSL-KrasG12D L/+;Pten L/+
|
|
| Sample_geo_accession | GSM634502
| | Sample_status | Public on Sep 01 2011
| | Sample_submission_date | Dec 02 2010
| | Sample_last_update_date | Sep 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA followed by Rneasy column cleanup was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Mouse Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The software used was Expression Console from Affimatrix and normalization algorithm used was MAS5.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Haoqiang,,Ying
| | Sample_contact_email | haoqiang_ying@dfci.harvard.edu
| | Sample_contact_phone | 617-582-7978
| | Sample_contact_fax | 617-632-6069
| | Sample_contact_laboratory | Ronald DePinho
| | Sample_contact_department | Medical Oncology
| | Sample_contact_institute | Dana-Farber Cancer Institute
| | Sample_contact_address | 44 Binney St.
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM634nnn/GSM634502/suppl/GSM634502.CEL.gz
| | Sample_series_id | GSE25828
| | Sample_data_row_count | 45037
| | |
|
GSM634503 | GPL1261 |
|
2975
|
KrasG12D Pten L/+ PDEC
|
strain: FVB/C57B6 mixed backgroud
cell type: primary KrasG12D Pten L/+ pancreatic ductal epithelial cells, P4
genotype/variation: Pdx1-Cre;LSL-KrasG12D L/+;Pten L/+
|
|
| Sample_geo_accession | GSM634503
| | Sample_status | Public on Sep 01 2011
| | Sample_submission_date | Dec 02 2010
| | Sample_last_update_date | Sep 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA followed by Rneasy column cleanup was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Mouse Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The software used was Expression Console from Affimatrix and normalization algorithm used was MAS5.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Haoqiang,,Ying
| | Sample_contact_email | haoqiang_ying@dfci.harvard.edu
| | Sample_contact_phone | 617-582-7978
| | Sample_contact_fax | 617-632-6069
| | Sample_contact_laboratory | Ronald DePinho
| | Sample_contact_department | Medical Oncology
| | Sample_contact_institute | Dana-Farber Cancer Institute
| | Sample_contact_address | 44 Binney St.
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM634nnn/GSM634503/suppl/GSM634503.CEL.gz
| | Sample_series_id | GSE25828
| | Sample_data_row_count | 45037
| | |
|
GSM634504 | GPL1261 |
|
3030
|
KrasG12D Pten L/+ PDEC
|
strain: FVB/C57B6 mixed backgroud
cell type: primary KrasG12D Pten L/+ pancreatic ductal epithelial cells, P4
genotype/variation: Pdx1-Cre;LSL-KrasG12D L/+;Pten L/+
|
|
| Sample_geo_accession | GSM634504
| | Sample_status | Public on Sep 01 2011
| | Sample_submission_date | Dec 02 2010
| | Sample_last_update_date | Sep 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA followed by Rneasy column cleanup was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Mouse Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The software used was Expression Console from Affimatrix and normalization algorithm used was MAS5.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Haoqiang,,Ying
| | Sample_contact_email | haoqiang_ying@dfci.harvard.edu
| | Sample_contact_phone | 617-582-7978
| | Sample_contact_fax | 617-632-6069
| | Sample_contact_laboratory | Ronald DePinho
| | Sample_contact_department | Medical Oncology
| | Sample_contact_institute | Dana-Farber Cancer Institute
| | Sample_contact_address | 44 Binney St.
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM634nnn/GSM634504/suppl/GSM634504.CEL.gz
| | Sample_series_id | GSE25828
| | Sample_data_row_count | 45037
| | |
|
GSM634505 | GPL1261 |
|
3036
|
KrasG12D Pten L/+ PDEC
|
strain: FVB/C57B6 mixed backgroud
cell type: primary KrasG12D Pten L/+ pancreatic ductal epithelial cells, P4
genotype/variation: Pdx1-Cre;LSL-KrasG12D L/+;Pten L/+
|
|
| Sample_geo_accession | GSM634505
| | Sample_status | Public on Sep 01 2011
| | Sample_submission_date | Dec 02 2010
| | Sample_last_update_date | Sep 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA followed by Rneasy column cleanup was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Mouse Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The software used was Expression Console from Affimatrix and normalization algorithm used was MAS5.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Haoqiang,,Ying
| | Sample_contact_email | haoqiang_ying@dfci.harvard.edu
| | Sample_contact_phone | 617-582-7978
| | Sample_contact_fax | 617-632-6069
| | Sample_contact_laboratory | Ronald DePinho
| | Sample_contact_department | Medical Oncology
| | Sample_contact_institute | Dana-Farber Cancer Institute
| | Sample_contact_address | 44 Binney St.
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM634nnn/GSM634505/suppl/GSM634505.CEL.gz
| | Sample_series_id | GSE25828
| | Sample_data_row_count | 45037
| | |
|
GSM634506 | GPL1261 |
|
LZ10
|
KrasG12D PDEC
|
strain: FVB/C57B6 mixed backgroud
cell type: primary KrasG12D pancreatic ductal epithelial cells, P7
genotype/variation: Pdx1-Cre;LSL-KrasG12D L/+
|
|
| Sample_geo_accession | GSM634506
| | Sample_status | Public on Sep 01 2011
| | Sample_submission_date | Dec 02 2010
| | Sample_last_update_date | Sep 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA followed by Rneasy column cleanup was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Mouse Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The software used was Expression Console from Affimatrix and normalization algorithm used was MAS5.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Haoqiang,,Ying
| | Sample_contact_email | haoqiang_ying@dfci.harvard.edu
| | Sample_contact_phone | 617-582-7978
| | Sample_contact_fax | 617-632-6069
| | Sample_contact_laboratory | Ronald DePinho
| | Sample_contact_department | Medical Oncology
| | Sample_contact_institute | Dana-Farber Cancer Institute
| | Sample_contact_address | 44 Binney St.
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM634nnn/GSM634506/suppl/GSM634506.CEL.gz
| | Sample_series_id | GSE25828
| | Sample_data_row_count | 45037
| | |
|
GSM634507 | GPL1261 |
|
LZ11
|
KrasG12D PDEC
|
strain: FVB/C57B6 mixed backgroud
cell type: primary KrasG12D pancreatic ductal epithelial cells, P7
genotype/variation: Pdx1-Cre;LSL-KrasG12D L/+
|
|
| Sample_geo_accession | GSM634507
| | Sample_status | Public on Sep 01 2011
| | Sample_submission_date | Dec 02 2010
| | Sample_last_update_date | Sep 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA followed by Rneasy column cleanup was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Mouse Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The software used was Expression Console from Affimatrix and normalization algorithm used was MAS5.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Haoqiang,,Ying
| | Sample_contact_email | haoqiang_ying@dfci.harvard.edu
| | Sample_contact_phone | 617-582-7978
| | Sample_contact_fax | 617-632-6069
| | Sample_contact_laboratory | Ronald DePinho
| | Sample_contact_department | Medical Oncology
| | Sample_contact_institute | Dana-Farber Cancer Institute
| | Sample_contact_address | 44 Binney St.
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM634nnn/GSM634507/suppl/GSM634507.CEL.gz
| | Sample_series_id | GSE25828
| | Sample_data_row_count | 45037
| | |
|
GSM634508 | GPL1261 |
|
SM12
|
KrasG12D PDEC
|
strain: FVB/C57B6 mixed backgroud
cell type: primary KrasG12D pancreatic ductal epithelial cells, P7
genotype/variation: Pdx1-Cre;LSL-KrasG12D L/+
|
|
| Sample_geo_accession | GSM634508
| | Sample_status | Public on Sep 01 2011
| | Sample_submission_date | Dec 02 2010
| | Sample_last_update_date | Sep 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA followed by Rneasy column cleanup was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Mouse Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The software used was Expression Console from Affimatrix and normalization algorithm used was MAS5.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Haoqiang,,Ying
| | Sample_contact_email | haoqiang_ying@dfci.harvard.edu
| | Sample_contact_phone | 617-582-7978
| | Sample_contact_fax | 617-632-6069
| | Sample_contact_laboratory | Ronald DePinho
| | Sample_contact_department | Medical Oncology
| | Sample_contact_institute | Dana-Farber Cancer Institute
| | Sample_contact_address | 44 Binney St.
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM634nnn/GSM634508/suppl/GSM634508.CEL.gz
| | Sample_series_id | GSE25828
| | Sample_data_row_count | 45037
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