Search results for the GEO ID: GSE26002  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM638153 | GPL1261 |
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Tumor from TRP mouse model, 125988, uninduced
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Solid tumor cells
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strain: 84-90% C57Bl6 and 6-13% BDF1
gender: m
genotype: GZT121/92+/-,KrasG12D+/m,CP10+/+,G-CreER+/-
genotype abbreviation: TR
agent: control (uninduced)
time: control (uninduced)
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NCI-125988-02-10FA-01-41w-R-4302
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| Sample_geo_accession | GSM638153
| | Sample_status | Public on Sep 13 2012
| | Sample_submission_date | Dec 10 2010
| | Sample_last_update_date | Sep 13 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Uninduced.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with R/Bioconductor rma package.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Burak,,Kutlu
| | Sample_contact_email | bkutlu@systemsbiology.org
| | Sample_contact_phone | 206-732-1200
| | Sample_contact_institute | Institute for Systems Biology
| | Sample_contact_address | 1441 North 34th Street
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98103
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM638nnn/GSM638153/suppl/GSM638153.CEL.gz
| | Sample_series_id | GSE26002
| | Sample_series_id | GSE26069
| | Sample_data_row_count | 45037
| | |
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GSM638154 | GPL1261 |
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Tumor from TRP mouse model, 163488, tamoxifen induced, 21w
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Solid tumor cells
|
strain: 84-90% C57Bl6 and 6-13% BDF1
gender: m
genotype: GZT121/92+/-,KrasG12D+/m,CP10+/m,G-CreER+/-
genotype abbreviation: TRPhet
agent: tamoxifen
time: 21w post induction
|
NCI-163488-03-10FA-01-21w-R-4302
|
| Sample_geo_accession | GSM638154
| | Sample_status | Public on Sep 13 2012
| | Sample_submission_date | Dec 10 2010
| | Sample_last_update_date | Sep 13 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Mice were induced with 5 Tamoxifen injections
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with R/Bioconductor rma package.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Burak,,Kutlu
| | Sample_contact_email | bkutlu@systemsbiology.org
| | Sample_contact_phone | 206-732-1200
| | Sample_contact_institute | Institute for Systems Biology
| | Sample_contact_address | 1441 North 34th Street
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98103
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM638nnn/GSM638154/suppl/GSM638154.CEL.gz
| | Sample_series_id | GSE26002
| | Sample_series_id | GSE26069
| | Sample_data_row_count | 45037
| | |
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GSM638155 | GPL1261 |
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Tumor from TRP mouse model, 164237, tamoxifen induced, 9w
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Solid tumor cells
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strain: 84-90% C57Bl6 and 6-13% BDF1
gender: f
genotype: GZT121/92+/-,KrasG12D+/m,CP10m/m,G-CreER+/-
genotype abbreviation: TRPnull
agent: tamoxifen
time: 9w post induction
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NCI-164237-04-10FA-01-9w-R-4302
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| Sample_geo_accession | GSM638155
| | Sample_status | Public on Sep 13 2012
| | Sample_submission_date | Dec 10 2010
| | Sample_last_update_date | Sep 13 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Mice were induced with 5 Tamoxifen injections
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with R/Bioconductor rma package.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Burak,,Kutlu
| | Sample_contact_email | bkutlu@systemsbiology.org
| | Sample_contact_phone | 206-732-1200
| | Sample_contact_institute | Institute for Systems Biology
| | Sample_contact_address | 1441 North 34th Street
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98103
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM638nnn/GSM638155/suppl/GSM638155.CEL.gz
| | Sample_series_id | GSE26002
| | Sample_series_id | GSE26069
| | Sample_data_row_count | 45037
| | |
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GSM638156 | GPL1261 |
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Tumor from TRP mouse model, 131711, tamoxifen induced, 11w
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Solid tumor cells
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strain: 84-90% C57Bl6 and 6-13% BDF1
gender: m
genotype: GZT121/92+/-,KrasG12D+/m,CP10+/m,G-CreER+/-
genotype abbreviation: TRPhet
agent: tamoxifen
time: 11w post induction
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NCI-131711-03-10FA-01-11w-R-4302
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| Sample_geo_accession | GSM638156
| | Sample_status | Public on Sep 13 2012
| | Sample_submission_date | Dec 10 2010
| | Sample_last_update_date | Sep 13 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Mice were induced with 5 Tamoxifen injections
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with R/Bioconductor rma package.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Burak,,Kutlu
| | Sample_contact_email | bkutlu@systemsbiology.org
| | Sample_contact_phone | 206-732-1200
| | Sample_contact_institute | Institute for Systems Biology
| | Sample_contact_address | 1441 North 34th Street
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98103
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM638nnn/GSM638156/suppl/GSM638156.CEL.gz
| | Sample_series_id | GSE26002
| | Sample_series_id | GSE26069
| | Sample_data_row_count | 45037
| | |
|
GSM638157 | GPL1261 |
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Tumor from TRP mouse model, 190949, tamoxifen induced, 15w
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Solid tumor cells
|
strain: 84-90% C57Bl6 and 6-13% BDF1
gender: m
genotype: GZT121/92+/-,KrasG12D+/m,CP10m/m,G-CreER+/-
genotype abbreviation: TRPnull
agent: tamoxifen
time: 15w post induction
|
NCI-190949-04-10FA-01-15w-R-4302
|
| Sample_geo_accession | GSM638157
| | Sample_status | Public on Sep 13 2012
| | Sample_submission_date | Dec 10 2010
| | Sample_last_update_date | Sep 13 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Mice were induced with 5 Tamoxifen injections
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with R/Bioconductor rma package.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Burak,,Kutlu
| | Sample_contact_email | bkutlu@systemsbiology.org
| | Sample_contact_phone | 206-732-1200
| | Sample_contact_institute | Institute for Systems Biology
| | Sample_contact_address | 1441 North 34th Street
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98103
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM638nnn/GSM638157/suppl/GSM638157.CEL.gz
| | Sample_series_id | GSE26002
| | Sample_series_id | GSE26069
| | Sample_data_row_count | 45037
| | |
|
GSM638158 | GPL1261 |
|
Tumor from TRP mouse model, 1953, tamoxifen induced, 10w
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Solid tumor cells
|
strain: 84-90% C57Bl6 and 6-13% BDF1
gender: f
genotype: GZT121/92+/-,KrasG12D+/m,CP10+/m,G-CreER+/-
genotype abbreviation: TRPhet
agent: tamoxifen
time: 10w post induction
|
NCI-1953-03-10FA-01-10w-R-4302
|
| Sample_geo_accession | GSM638158
| | Sample_status | Public on Sep 13 2012
| | Sample_submission_date | Dec 10 2010
| | Sample_last_update_date | Sep 13 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Mice were induced with 5 Tamoxifen injections
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with R/Bioconductor rma package.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Burak,,Kutlu
| | Sample_contact_email | bkutlu@systemsbiology.org
| | Sample_contact_phone | 206-732-1200
| | Sample_contact_institute | Institute for Systems Biology
| | Sample_contact_address | 1441 North 34th Street
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98103
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM638nnn/GSM638158/suppl/GSM638158.CEL.gz
| | Sample_series_id | GSE26002
| | Sample_series_id | GSE26069
| | Sample_data_row_count | 45037
| | |
|
GSM638159 | GPL1261 |
|
Tumor from TRP mouse model, 751, tamoxifen induced, 18w
|
Solid tumor cells
|
strain: 84-90% C57Bl6 and 6-13% BDF1
gender: m
genotype: GZT121/92+/-,KrasG12D+/m,CP10+/m,G-CreER+/-
genotype abbreviation: TRPhet
agent: tamoxifen
time: 18w post induction
|
NCI-751-03-10FA-01-18w-R-4302
|
| Sample_geo_accession | GSM638159
| | Sample_status | Public on Sep 13 2012
| | Sample_submission_date | Dec 10 2010
| | Sample_last_update_date | Sep 13 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Mice were induced with 5 Tamoxifen injections
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with R/Bioconductor rma package.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Burak,,Kutlu
| | Sample_contact_email | bkutlu@systemsbiology.org
| | Sample_contact_phone | 206-732-1200
| | Sample_contact_institute | Institute for Systems Biology
| | Sample_contact_address | 1441 North 34th Street
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98103
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM638nnn/GSM638159/suppl/GSM638159.CEL.gz
| | Sample_series_id | GSE26002
| | Sample_series_id | GSE26069
| | Sample_data_row_count | 45037
| | |
|
GSM638160 | GPL1261 |
|
Tumor from TRP mouse model, 601, tamoxifen induced, 20w
|
Solid tumor cells
|
strain: 84-90% C57Bl6 and 6-13% BDF1
gender: m
genotype: GZT121/92+/-,KrasG12D+/m,CP10+/m,G-CreER+/-
genotype abbreviation: TRPhet
agent: tamoxifen
time: 20w post induction
|
NCI-601-03-10FA-01-20w-R-4302
|
| Sample_geo_accession | GSM638160
| | Sample_status | Public on Sep 13 2012
| | Sample_submission_date | Dec 10 2010
| | Sample_last_update_date | Sep 13 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Mice were induced with 5 Tamoxifen injections
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with R/Bioconductor rma package.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Burak,,Kutlu
| | Sample_contact_email | bkutlu@systemsbiology.org
| | Sample_contact_phone | 206-732-1200
| | Sample_contact_institute | Institute for Systems Biology
| | Sample_contact_address | 1441 North 34th Street
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98103
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM638nnn/GSM638160/suppl/GSM638160.CEL.gz
| | Sample_series_id | GSE26002
| | Sample_series_id | GSE26069
| | Sample_data_row_count | 45037
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