Search results for the GEO ID: GSE26037  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM639448 | GPL1261 |
|
Wild type, biological rep1
|
wild type
|
genotype: wild type
age: 3 months
tissue: hypothalamus
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WT1_YW_(mouse430_2)
Wild type hypothalamus.
|
| Sample_geo_accession | GSM639448
| | Sample_status | Public on Dec 14 2010
| | Sample_submission_date | Dec 13 2010
| | Sample_last_update_date | Dec 14 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | Mouse hypothalami were dissected from 3-month-old mice.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted with Trizol followed by cleanup with miRNeasy(Qiagen) columns.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Starting with 100ng of total RNA, biotin-labeled cRNA was produced using the Affymetrix Express One-Cycle Target labeling kit according to the manufacturer's protocol.
| | Sample_hyb_protocol | Samples were fragmented and hybridized to the array for 16h at 45oC in a rotating hybridization oven (60rpm) using the Affymetrix Eukaryotic Target Hybridization Controls and protocol. Slides were stained and washed as indicated in the Antibody Amplification Stain for Eukaryotic Targets protocol using the Affymetrix Fluidics Station FS450. Affymetrix fluidics protocol, FS450_0001.
| | Sample_scan_protocol | Affymetrix GeneChIP Scanner 3000 7G.
| | Sample_data_processing | The resulting data were processed using R (version 2.10.0) and Bioconductor packages. The Bioconductor package affy was used for pre-processing and RMA normalization. P-values and foldchanges were determined within R after non-specific filtering with the Bioconductor package genefilter.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | franck,,oury
| | Sample_contact_email | fo2133@columbia.edu
| | Sample_contact_phone | 2123059586
| | Sample_contact_institute | Columbia University
| | Sample_contact_address | HHSC 701W 168th street
| | Sample_contact_city | NEW YORK
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10032
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM639nnn/GSM639448/suppl/GSM639448.CEL.gz
| | Sample_series_id | GSE26037
| | Sample_data_row_count | 45101
| | |
|
GSM639449 | GPL1261 |
|
Wild type, biological rep2
|
wild type
|
genotype: wild type
age: 3 months
tissue: hypothalamus
|
WT2_YW_(mouse430_2)
Wild type hypothalamus.
|
| Sample_geo_accession | GSM639449
| | Sample_status | Public on Dec 14 2010
| | Sample_submission_date | Dec 13 2010
| | Sample_last_update_date | Dec 14 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | Mouse hypothalami were dissected from 3-month-old mice.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted with Trizol followed by cleanup with miRNeasy(Qiagen) columns.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Starting with 100ng of total RNA, biotin-labeled cRNA was produced using the Affymetrix Express One-Cycle Target labeling kit according to the manufacturer's protocol.
| | Sample_hyb_protocol | Samples were fragmented and hybridized to the array for 16h at 45oC in a rotating hybridization oven (60rpm) using the Affymetrix Eukaryotic Target Hybridization Controls and protocol. Slides were stained and washed as indicated in the Antibody Amplification Stain for Eukaryotic Targets protocol using the Affymetrix Fluidics Station FS450. Affymetrix fluidics protocol, FS450_0001.
| | Sample_scan_protocol | Affymetrix GeneChIP Scanner 3000 7G.
| | Sample_data_processing | The resulting data were processed using R (version 2.10.0) and Bioconductor packages. The Bioconductor package affy was used for pre-processing and RMA normalization. P-values and foldchanges were determined within R after non-specific filtering with the Bioconductor package genefilter.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | franck,,oury
| | Sample_contact_email | fo2133@columbia.edu
| | Sample_contact_phone | 2123059586
| | Sample_contact_institute | Columbia University
| | Sample_contact_address | HHSC 701W 168th street
| | Sample_contact_city | NEW YORK
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10032
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM639nnn/GSM639449/suppl/GSM639449.CEL.gz
| | Sample_series_id | GSE26037
| | Sample_data_row_count | 45101
| | |
|
GSM639450 | GPL1261 |
|
Wild type, biological rep3
|
wild type
|
genotype: wild type
age: 3 months
tissue: hypothalamus
|
WT3_YW_(mouse430_2)
Wild type hypothalamus.
|
| Sample_geo_accession | GSM639450
| | Sample_status | Public on Dec 14 2010
| | Sample_submission_date | Dec 13 2010
| | Sample_last_update_date | Dec 14 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | Mouse hypothalami were dissected from 3-month-old mice.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted with Trizol followed by cleanup with miRNeasy(Qiagen) columns.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Starting with 100ng of total RNA, biotin-labeled cRNA was produced using the Affymetrix Express One-Cycle Target labeling kit according to the manufacturer's protocol.
| | Sample_hyb_protocol | Samples were fragmented and hybridized to the array for 16h at 45oC in a rotating hybridization oven (60rpm) using the Affymetrix Eukaryotic Target Hybridization Controls and protocol. Slides were stained and washed as indicated in the Antibody Amplification Stain for Eukaryotic Targets protocol using the Affymetrix Fluidics Station FS450. Affymetrix fluidics protocol, FS450_0001.
| | Sample_scan_protocol | Affymetrix GeneChIP Scanner 3000 7G.
| | Sample_data_processing | The resulting data were processed using R (version 2.10.0) and Bioconductor packages. The Bioconductor package affy was used for pre-processing and RMA normalization. P-values and foldchanges were determined within R after non-specific filtering with the Bioconductor package genefilter.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | franck,,oury
| | Sample_contact_email | fo2133@columbia.edu
| | Sample_contact_phone | 2123059586
| | Sample_contact_institute | Columbia University
| | Sample_contact_address | HHSC 701W 168th street
| | Sample_contact_city | NEW YORK
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10032
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM639nnn/GSM639450/suppl/GSM639450.CEL.gz
| | Sample_series_id | GSE26037
| | Sample_data_row_count | 45101
| | |
|
GSM639451 | GPL1261 |
|
Wild type, biological rep4
|
wild type
|
genotype: wild type
age: 3 months
tissue: hypothalamus
|
WT4_YW_(mouse430_2)
Wild type hypothalamus.
|
| Sample_geo_accession | GSM639451
| | Sample_status | Public on Dec 14 2010
| | Sample_submission_date | Dec 13 2010
| | Sample_last_update_date | Dec 14 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | Mouse hypothalami were dissected from 3-month-old mice.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted with Trizol followed by cleanup with miRNeasy(Qiagen) columns.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Starting with 100ng of total RNA, biotin-labeled cRNA was produced using the Affymetrix Express One-Cycle Target labeling kit according to the manufacturer's protocol.
| | Sample_hyb_protocol | Samples were fragmented and hybridized to the array for 16h at 45oC in a rotating hybridization oven (60rpm) using the Affymetrix Eukaryotic Target Hybridization Controls and protocol. Slides were stained and washed as indicated in the Antibody Amplification Stain for Eukaryotic Targets protocol using the Affymetrix Fluidics Station FS450. Affymetrix fluidics protocol, FS450_0001.
| | Sample_scan_protocol | Affymetrix GeneChIP Scanner 3000 7G.
| | Sample_data_processing | The resulting data were processed using R (version 2.10.0) and Bioconductor packages. The Bioconductor package affy was used for pre-processing and RMA normalization. P-values and foldchanges were determined within R after non-specific filtering with the Bioconductor package genefilter.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | franck,,oury
| | Sample_contact_email | fo2133@columbia.edu
| | Sample_contact_phone | 2123059586
| | Sample_contact_institute | Columbia University
| | Sample_contact_address | HHSC 701W 168th street
| | Sample_contact_city | NEW YORK
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10032
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM639nnn/GSM639451/suppl/GSM639451.CEL.gz
| | Sample_series_id | GSE26037
| | Sample_data_row_count | 45101
| | |
|
GSM639452 | GPL1261 |
|
Creb-PomcCre-/-, biological rep1
|
Creb-PomcCre-/-
|
genotype: Creb-PomcCre-/-
age: 3 months
tissue: hypothalamus
|
Creb-pomcCre-/-1_YW_(mouse430_2)
Creb-pomcCre-/- hypothalamus.
|
| Sample_geo_accession | GSM639452
| | Sample_status | Public on Dec 14 2010
| | Sample_submission_date | Dec 13 2010
| | Sample_last_update_date | Dec 14 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | Mouse hypothalami were dissected from 3-month-old mice.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted with Trizol followed by cleanup with miRNeasy(Qiagen) columns.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Starting with 100ng of total RNA, biotin-labeled cRNA was produced using the Affymetrix Express One-Cycle Target labeling kit according to the manufacturer's protocol.
| | Sample_hyb_protocol | Samples were fragmented and hybridized to the array for 16h at 45oC in a rotating hybridization oven (60rpm) using the Affymetrix Eukaryotic Target Hybridization Controls and protocol. Slides were stained and washed as indicated in the Antibody Amplification Stain for Eukaryotic Targets protocol using the Affymetrix Fluidics Station FS450. Affymetrix fluidics protocol, FS450_0001.
| | Sample_scan_protocol | Affymetrix GeneChIP Scanner 3000 7G.
| | Sample_data_processing | The resulting data were processed using R (version 2.10.0) and Bioconductor packages. The Bioconductor package affy was used for pre-processing and RMA normalization. P-values and foldchanges were determined within R after non-specific filtering with the Bioconductor package genefilter.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | franck,,oury
| | Sample_contact_email | fo2133@columbia.edu
| | Sample_contact_phone | 2123059586
| | Sample_contact_institute | Columbia University
| | Sample_contact_address | HHSC 701W 168th street
| | Sample_contact_city | NEW YORK
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10032
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM639nnn/GSM639452/suppl/GSM639452.CEL.gz
| | Sample_series_id | GSE26037
| | Sample_data_row_count | 45101
| | |
|
GSM639453 | GPL1261 |
|
Creb-PomcCre-/-, biological rep2
|
Creb-PomcCre-/-
|
genotype: Creb-PomcCre-/-
age: 3 months
tissue: hypothalamus
|
Creb-pomcCre-/-2_YW_(mouse430_2)
Creb-pomcCre-/- hypothalamus.
|
| Sample_geo_accession | GSM639453
| | Sample_status | Public on Dec 14 2010
| | Sample_submission_date | Dec 13 2010
| | Sample_last_update_date | Dec 14 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | Mouse hypothalami were dissected from 3-month-old mice.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted with Trizol followed by cleanup with miRNeasy(Qiagen) columns.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Starting with 100ng of total RNA, biotin-labeled cRNA was produced using the Affymetrix Express One-Cycle Target labeling kit according to the manufacturer's protocol.
| | Sample_hyb_protocol | Samples were fragmented and hybridized to the array for 16h at 45oC in a rotating hybridization oven (60rpm) using the Affymetrix Eukaryotic Target Hybridization Controls and protocol. Slides were stained and washed as indicated in the Antibody Amplification Stain for Eukaryotic Targets protocol using the Affymetrix Fluidics Station FS450. Affymetrix fluidics protocol, FS450_0001.
| | Sample_scan_protocol | Affymetrix GeneChIP Scanner 3000 7G.
| | Sample_data_processing | The resulting data were processed using R (version 2.10.0) and Bioconductor packages. The Bioconductor package affy was used for pre-processing and RMA normalization. P-values and foldchanges were determined within R after non-specific filtering with the Bioconductor package genefilter.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | franck,,oury
| | Sample_contact_email | fo2133@columbia.edu
| | Sample_contact_phone | 2123059586
| | Sample_contact_institute | Columbia University
| | Sample_contact_address | HHSC 701W 168th street
| | Sample_contact_city | NEW YORK
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10032
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM639nnn/GSM639453/suppl/GSM639453.CEL.gz
| | Sample_series_id | GSE26037
| | Sample_data_row_count | 45101
| | |
|
GSM639454 | GPL1261 |
|
Creb-PomcCre-/-, biological rep3
|
Creb-PomcCre-/-
|
genotype: Creb-PomcCre-/-
age: 3 months
tissue: hypothalamus
|
Creb-pomcCre-/-3_YW_(mouse430_2)
Creb-pomcCre-/- hypothalamus.
|
| Sample_geo_accession | GSM639454
| | Sample_status | Public on Dec 14 2010
| | Sample_submission_date | Dec 13 2010
| | Sample_last_update_date | Dec 14 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | Mouse hypothalami were dissected from 3-month-old mice.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted with Trizol followed by cleanup with miRNeasy(Qiagen) columns.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Starting with 100ng of total RNA, biotin-labeled cRNA was produced using the Affymetrix Express One-Cycle Target labeling kit according to the manufacturer's protocol.
| | Sample_hyb_protocol | Samples were fragmented and hybridized to the array for 16h at 45oC in a rotating hybridization oven (60rpm) using the Affymetrix Eukaryotic Target Hybridization Controls and protocol. Slides were stained and washed as indicated in the Antibody Amplification Stain for Eukaryotic Targets protocol using the Affymetrix Fluidics Station FS450. Affymetrix fluidics protocol, FS450_0001.
| | Sample_scan_protocol | Affymetrix GeneChIP Scanner 3000 7G.
| | Sample_data_processing | The resulting data were processed using R (version 2.10.0) and Bioconductor packages. The Bioconductor package affy was used for pre-processing and RMA normalization. P-values and foldchanges were determined within R after non-specific filtering with the Bioconductor package genefilter.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | franck,,oury
| | Sample_contact_email | fo2133@columbia.edu
| | Sample_contact_phone | 2123059586
| | Sample_contact_institute | Columbia University
| | Sample_contact_address | HHSC 701W 168th street
| | Sample_contact_city | NEW YORK
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10032
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM639nnn/GSM639454/suppl/GSM639454.CEL.gz
| | Sample_series_id | GSE26037
| | Sample_data_row_count | 45101
| | |
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