Search results for the GEO ID: GSE26096  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM533694 | GPL1261 |
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Serum-starved control, biological rep1
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serum-starved, uninduced MEFs
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cell type: secondary, inducible MEFs
strain: 129/SvJ x C57/B6 hybrid
agent: control
biological rep: 1
|
Gene expression from MEFs undergoing serum starvation for 96 hours.
|
| Sample_geo_accession | GSM533694
| | Sample_status | Public on Apr 16 2010
| | Sample_submission_date | Apr 16 2010
| | Sample_last_update_date | Dec 16 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Either 15% FBS containing medium supplemented with 2 ug/ul Doxycyline or 0.5% FBS containing Serum Starvation medium
| | Sample_growth_protocol_ch1 | Standard 10% Fetal Bovine Serum containing growth medium
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Extraction of total RNA was done using TRIzol (Invitrogen) followed by cleanup using the RNeasy(R) Mini column system (Qiagen).
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol
| | Sample_hyb_protocol | Standard Affymetrix protocol
| | Sample_scan_protocol | Standard Affymetrix protocol
| | Sample_data_processing | Robust Multi-Array (RMA) normalized.
| | Sample_data_processing | Preprocessing, normalization, and analysis were all performed using GenePattern software (http://www.broadinstitute.org/cancer/software/genepattern/).
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Richard,,Koche
| | Sample_contact_institute | Broad Institute of Harvard and MIT
| | Sample_contact_address | 185 Cambridge St.
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02114
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM533nnn/GSM533694/suppl/GSM533694.CEL.gz
| | Sample_series_id | GSE21361
| | Sample_series_id | GSE26096
| | Sample_series_id | GSE26100
| | Sample_data_row_count | 45101
| | |
|
GSM533695 | GPL1261 |
|
Serum-starved control, biological rep2
|
serum-starved, uninduced MEFs
|
cell type: secondary, inducible MEFs
strain: 129/SvJ x C57/B6 hybrid
agent: control
biological rep: 2
|
Gene expression from MEFs undergoing serum starvation for 96 hours.
|
| Sample_geo_accession | GSM533695
| | Sample_status | Public on Apr 16 2010
| | Sample_submission_date | Apr 16 2010
| | Sample_last_update_date | Dec 16 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Either 15% FBS containing medium supplemented with 2 ug/ul Doxycyline or 0.5% FBS containing Serum Starvation medium
| | Sample_growth_protocol_ch1 | Standard 10% Fetal Bovine Serum containing growth medium
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Extraction of total RNA was done using TRIzol (Invitrogen) followed by cleanup using the RNeasy(R) Mini column system (Qiagen).
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol
| | Sample_hyb_protocol | Standard Affymetrix protocol
| | Sample_scan_protocol | Standard Affymetrix protocol
| | Sample_data_processing | Robust Multi-Array (RMA) normalized.
| | Sample_data_processing | Preprocessing, normalization, and analysis were all performed using GenePattern software (http://www.broadinstitute.org/cancer/software/genepattern/).
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Richard,,Koche
| | Sample_contact_institute | Broad Institute of Harvard and MIT
| | Sample_contact_address | 185 Cambridge St.
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02114
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM533nnn/GSM533695/suppl/GSM533695.CEL.gz
| | Sample_series_id | GSE21361
| | Sample_series_id | GSE26096
| | Sample_series_id | GSE26100
| | Sample_data_row_count | 45101
| | |
|
GSM533696 | GPL1261 |
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96 hr doxycycline induction, biological rep1
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Doxycycline-induced MEFs
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cell type: secondary, inducible MEFs
strain: 129/SvJ x C57/B6 hybrid
agent: Doxycycline
biological rep: 1
cell division cohort: average of three or more cell divisions
|
Gene expression from MEFs undergoing doxycycline-induced OSKM expression for 96 hours.
Gene expression from 96 hours of doxycycline-induced MEFs with an average of three or more cell divisions.
|
| Sample_geo_accession | GSM533696
| | Sample_status | Public on Apr 16 2010
| | Sample_submission_date | Apr 16 2010
| | Sample_last_update_date | Dec 16 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Either 15% FBS containing medium supplemented with 2 ug/ul Doxycyline or 0.5% FBS containing Serum Starvation medium
| | Sample_growth_protocol_ch1 | Standard 10% Fetal Bovine Serum containing growth medium
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Extraction of total RNA was done using TRIzol (Invitrogen) followed by cleanup using the RNeasy(R) Mini column system (Qiagen).
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol
| | Sample_hyb_protocol | Standard Affymetrix protocol
| | Sample_scan_protocol | Standard Affymetrix protocol
| | Sample_data_processing | Robust Multi-Array (RMA) normalized.
| | Sample_data_processing | Preprocessing, normalization, and analysis were all performed using GenePattern software (http://www.broadinstitute.org/cancer/software/genepattern/).
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Richard,,Koche
| | Sample_contact_institute | Broad Institute of Harvard and MIT
| | Sample_contact_address | 185 Cambridge St.
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02114
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM533nnn/GSM533696/suppl/GSM533696.CEL.gz
| | Sample_series_id | GSE21361
| | Sample_series_id | GSE26096
| | Sample_series_id | GSE26100
| | Sample_data_row_count | 45101
| | |
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GSM533697 | GPL1261 |
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96 hr doxycycline induction, biological rep2
|
Doxycycline-induced MEFs
|
cell type: secondary, inducible MEFs
strain: 129/SvJ x C57/B6 hybrid
agent: Doxycycline
biological rep: 2
cell division cohort: average of three or more cell divisions
|
Gene expression from MEFs undergoing doxycycline-induced OSKM expression for 96 hours.
Gene expression from 96 hours of doxycycline-induced MEFs with an average of three or more cell divisions.
|
| Sample_geo_accession | GSM533697
| | Sample_status | Public on Apr 16 2010
| | Sample_submission_date | Apr 16 2010
| | Sample_last_update_date | Dec 16 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Either 15% FBS containing medium supplemented with 2 ug/ul Doxycyline or 0.5% FBS containing Serum Starvation medium
| | Sample_growth_protocol_ch1 | Standard 10% Fetal Bovine Serum containing growth medium
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Extraction of total RNA was done using TRIzol (Invitrogen) followed by cleanup using the RNeasy(R) Mini column system (Qiagen).
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol
| | Sample_hyb_protocol | Standard Affymetrix protocol
| | Sample_scan_protocol | Standard Affymetrix protocol
| | Sample_data_processing | Robust Multi-Array (RMA) normalized.
| | Sample_data_processing | Preprocessing, normalization, and analysis were all performed using GenePattern software (http://www.broadinstitute.org/cancer/software/genepattern/).
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Richard,,Koche
| | Sample_contact_institute | Broad Institute of Harvard and MIT
| | Sample_contact_address | 185 Cambridge St.
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02114
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM533nnn/GSM533697/suppl/GSM533697.CEL.gz
| | Sample_series_id | GSE21361
| | Sample_series_id | GSE26096
| | Sample_series_id | GSE26100
| | Sample_data_row_count | 45101
| | |
|
GSM640682 | GPL1261 |
|
MEFdox0Div_rep1
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Doxycycline-induced MEFs
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agent: Doxycycline
replicate: 1
cell type: secondary, inducible MEFs
strain: 129/SvJ x C57/B6 hybrid
cell division cohort: average of zero cell divisions
|
Gene expression from 96 hours of doxycycline-induced MEFs with an average of zero cell divisions.
|
| Sample_geo_accession | GSM640682
| | Sample_status | Public on Jan 03 2011
| | Sample_submission_date | Dec 16 2010
| | Sample_last_update_date | Jan 03 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Either 15% FBS containing medium supplemented with 2 ug/ul Doxycyline or 0.5% FBS containing Serum Starvation medium
| | Sample_growth_protocol_ch1 | Standard 10% Fetal Bovine Serum containing growth medium
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Extraction of total RNA was done using TRIzol (Invitrogen) followed by cleanup using the RNeasy(R) Mini column system (Qiagen).
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol
| | Sample_hyb_protocol | Standard Affymetrix protocol
| | Sample_scan_protocol | Standard Affymetrix protocol
| | Sample_data_processing | Preprocessing, normalization, and analysis were all performed using GenePattern (http://www.broadinstitute.org/cancer/software/genepattern/).
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Richard,,Koche
| | Sample_contact_institute | Broad Institute of Harvard and MIT
| | Sample_contact_address | 185 Cambridge St.
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02114
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM640nnn/GSM640682/suppl/GSM640682.CEL.gz
| | Sample_series_id | GSE26096
| | Sample_series_id | GSE26100
| | Sample_data_row_count | 45101
| | |
|
GSM640683 | GPL1261 |
|
MEFdox0Div_rep2
|
Doxycycline-induced MEFs
|
agent: Doxycycline
replicate: 2
cell type: secondary, inducible MEFs
strain: 129/SvJ x C57/B6 hybrid
cell division cohort: average of zero cell divisions
|
Gene expression from 96 hours of doxycycline-induced MEFs with an average of zero cell divisions.
|
| Sample_geo_accession | GSM640683
| | Sample_status | Public on Jan 03 2011
| | Sample_submission_date | Dec 16 2010
| | Sample_last_update_date | Jan 03 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Either 15% FBS containing medium supplemented with 2 ug/ul Doxycyline or 0.5% FBS containing Serum Starvation medium
| | Sample_growth_protocol_ch1 | Standard 10% Fetal Bovine Serum containing growth medium
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Extraction of total RNA was done using TRIzol (Invitrogen) followed by cleanup using the RNeasy(R) Mini column system (Qiagen).
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol
| | Sample_hyb_protocol | Standard Affymetrix protocol
| | Sample_scan_protocol | Standard Affymetrix protocol
| | Sample_data_processing | Preprocessing, normalization, and analysis were all performed using GenePattern (http://www.broadinstitute.org/cancer/software/genepattern/).
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Richard,,Koche
| | Sample_contact_institute | Broad Institute of Harvard and MIT
| | Sample_contact_address | 185 Cambridge St.
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02114
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM640nnn/GSM640683/suppl/GSM640683.CEL.gz
| | Sample_series_id | GSE26096
| | Sample_series_id | GSE26100
| | Sample_data_row_count | 45101
| | |
|
GSM640684 | GPL1261 |
|
MEFdox1Div_rep1
|
Doxycycline-induced MEFs
|
agent: Doxycycline
replicate: 1
cell type: secondary, inducible MEFs
strain: 129/SvJ x C57/B6 hybrid
cell division cohort: average of one cell division
|
Gene expression from 96 hours of doxycycline-induced MEFs with an average of one cell division.
|
| Sample_geo_accession | GSM640684
| | Sample_status | Public on Jan 03 2011
| | Sample_submission_date | Dec 16 2010
| | Sample_last_update_date | Jan 03 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Either 15% FBS containing medium supplemented with 2 ug/ul Doxycyline or 0.5% FBS containing Serum Starvation medium
| | Sample_growth_protocol_ch1 | Standard 10% Fetal Bovine Serum containing growth medium
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Extraction of total RNA was done using TRIzol (Invitrogen) followed by cleanup using the RNeasy(R) Mini column system (Qiagen).
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol
| | Sample_hyb_protocol | Standard Affymetrix protocol
| | Sample_scan_protocol | Standard Affymetrix protocol
| | Sample_data_processing | Preprocessing, normalization, and analysis were all performed using GenePattern (http://www.broadinstitute.org/cancer/software/genepattern/).
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Richard,,Koche
| | Sample_contact_institute | Broad Institute of Harvard and MIT
| | Sample_contact_address | 185 Cambridge St.
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02114
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM640nnn/GSM640684/suppl/GSM640684.CEL.gz
| | Sample_series_id | GSE26096
| | Sample_series_id | GSE26100
| | Sample_data_row_count | 45101
| | |
|
GSM640685 | GPL1261 |
|
MEFdox1Div_rep2
|
Doxycycline-induced MEFs
|
agent: Doxycycline
replicate: 2
cell type: secondary, inducible MEFs
strain: 129/SvJ x C57/B6 hybrid
cell division cohort: average of one cell division
|
Gene expression from 96 hours of doxycycline-induced MEFs with an average of one cell division.
|
| Sample_geo_accession | GSM640685
| | Sample_status | Public on Jan 03 2011
| | Sample_submission_date | Dec 16 2010
| | Sample_last_update_date | Jan 03 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Either 15% FBS containing medium supplemented with 2 ug/ul Doxycyline or 0.5% FBS containing Serum Starvation medium
| | Sample_growth_protocol_ch1 | Standard 10% Fetal Bovine Serum containing growth medium
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Extraction of total RNA was done using TRIzol (Invitrogen) followed by cleanup using the RNeasy(R) Mini column system (Qiagen).
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol
| | Sample_hyb_protocol | Standard Affymetrix protocol
| | Sample_scan_protocol | Standard Affymetrix protocol
| | Sample_data_processing | Preprocessing, normalization, and analysis were all performed using GenePattern (http://www.broadinstitute.org/cancer/software/genepattern/).
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Richard,,Koche
| | Sample_contact_institute | Broad Institute of Harvard and MIT
| | Sample_contact_address | 185 Cambridge St.
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02114
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM640nnn/GSM640685/suppl/GSM640685.CEL.gz
| | Sample_series_id | GSE26096
| | Sample_series_id | GSE26100
| | Sample_data_row_count | 45101
| | |
|
GSM640686 | GPL1261 |
|
MEFdox2Div_rep1
|
Doxycycline-induced MEFs
|
agent: Doxycycline
replicate: 1
cell type: secondary, inducible MEFs
strain: 129/SvJ x C57/B6 hybrid
cell division cohort: average of two cell divisions
|
Gene expression from 96 hours of doxycycline-induced MEFs with an average of two cell divisions.
|
| Sample_geo_accession | GSM640686
| | Sample_status | Public on Jan 03 2011
| | Sample_submission_date | Dec 16 2010
| | Sample_last_update_date | Jan 03 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Either 15% FBS containing medium supplemented with 2 ug/ul Doxycyline or 0.5% FBS containing Serum Starvation medium
| | Sample_growth_protocol_ch1 | Standard 10% Fetal Bovine Serum containing growth medium
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Extraction of total RNA was done using TRIzol (Invitrogen) followed by cleanup using the RNeasy(R) Mini column system (Qiagen).
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol
| | Sample_hyb_protocol | Standard Affymetrix protocol
| | Sample_scan_protocol | Standard Affymetrix protocol
| | Sample_data_processing | Preprocessing, normalization, and analysis were all performed using GenePattern (http://www.broadinstitute.org/cancer/software/genepattern/).
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Richard,,Koche
| | Sample_contact_institute | Broad Institute of Harvard and MIT
| | Sample_contact_address | 185 Cambridge St.
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02114
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM640nnn/GSM640686/suppl/GSM640686.CEL.gz
| | Sample_series_id | GSE26096
| | Sample_series_id | GSE26100
| | Sample_data_row_count | 45101
| | |
|
GSM640687 | GPL1261 |
|
MEFdox2Div_rep2
|
Doxycycline-induced MEFs
|
agent: Doxycycline
replicate: 2
cell type: secondary, inducible MEFs
strain: 129/SvJ x C57/B6 hybrid
cell division cohort: average of two cell divisions
|
Gene expression from 96 hours of doxycycline-induced MEFs with an average of two cell divisions.
|
| Sample_geo_accession | GSM640687
| | Sample_status | Public on Jan 03 2011
| | Sample_submission_date | Dec 16 2010
| | Sample_last_update_date | Jan 03 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Either 15% FBS containing medium supplemented with 2 ug/ul Doxycyline or 0.5% FBS containing Serum Starvation medium
| | Sample_growth_protocol_ch1 | Standard 10% Fetal Bovine Serum containing growth medium
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Extraction of total RNA was done using TRIzol (Invitrogen) followed by cleanup using the RNeasy(R) Mini column system (Qiagen).
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol
| | Sample_hyb_protocol | Standard Affymetrix protocol
| | Sample_scan_protocol | Standard Affymetrix protocol
| | Sample_data_processing | Preprocessing, normalization, and analysis were all performed using GenePattern (http://www.broadinstitute.org/cancer/software/genepattern/).
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Richard,,Koche
| | Sample_contact_institute | Broad Institute of Harvard and MIT
| | Sample_contact_address | 185 Cambridge St.
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02114
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM640nnn/GSM640687/suppl/GSM640687.CEL.gz
| | Sample_series_id | GSE26096
| | Sample_series_id | GSE26100
| | Sample_data_row_count | 45101
| | |
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