Search results for the GEO ID: GSE26146  |
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GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM641869 | GPL570 |
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cultured human lung tissue-derived fibroblasts, biological rep1
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human lung cancer patient resected lung
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tissue: lung
cell type: tissue-derived fibroblasts
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| Sample_geo_accession | GSM641869
| | Sample_status | Public on Dec 18 2010
| | Sample_submission_date | Dec 17 2010
| | Sample_last_update_date | Dec 18 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | cells were plated at the density of 1x104 cells/cm2 and harvested at semi-confluence
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the Affymetrix 3' IVT Express Kit protocol from 100ng of total RNA
| | Sample_hyb_protocol | The procedures for target hybridization, washing, and staining with signal amplification were conducted according to the supplier's protocols.
| | Sample_scan_protocol | The arrays were scanned with a GeneChip Scanner 3000 (Affymetrix)
| | Sample_data_processing | Intensity of each feature of the array was calculated using GeneChip Operating Software, version 1.1.1 (Affymetrix). The average intensity was standardized to the target intensity, which was set equal to 1,000, to reliably compare various multiple arrays. The values were log-transformed and median-centered. The programs GeneSpring (Agilent Technologies, Santa Clara, CA, http://www.agilent.com) and Excel (Microsoft, Redmond, WA, http://www.microsoft.com) were used to perform the numerical analysis to permit gene selection.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Ayuko,,Hoshino
| | Sample_contact_email | ayukohoshino@hotmail.com
| | Sample_contact_institute | The University of Tokyo
| | Sample_contact_address | 6-5-1 Kashiwanoha
| | Sample_contact_city | Kashiwa
| | Sample_contact_state | Chiba
| | Sample_contact_zip/postal_code | 277-8577
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM641nnn/GSM641869/suppl/GSM641869.CEL.gz
| | Sample_series_id | GSE26146
| | Sample_data_row_count | 54675
| | |
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GSM641870 | GPL570 |
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cultured human lung tissue-derived fibroblasts, biological rep2
|
human lung cancer patient resected lung
|
tissue: lung
cell type: tissue-derived fibroblasts
|
|
| Sample_geo_accession | GSM641870
| | Sample_status | Public on Dec 18 2010
| | Sample_submission_date | Dec 17 2010
| | Sample_last_update_date | Dec 18 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | cells were plated at the density of 1x104 cells/cm2 and harvested at semi-confluence
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the Affymetrix 3' IVT Express Kit protocol from 100ng of total RNA
| | Sample_hyb_protocol | The procedures for target hybridization, washing, and staining with signal amplification were conducted according to the supplier's protocols.
| | Sample_scan_protocol | The arrays were scanned with a GeneChip Scanner 3000 (Affymetrix)
| | Sample_data_processing | Intensity of each feature of the array was calculated using GeneChip Operating Software, version 1.1.1 (Affymetrix). The average intensity was standardized to the target intensity, which was set equal to 1,000, to reliably compare various multiple arrays. The values were log-transformed and median-centered. The programs GeneSpring (Agilent Technologies, Santa Clara, CA, http://www.agilent.com) and Excel (Microsoft, Redmond, WA, http://www.microsoft.com) were used to perform the numerical analysis to permit gene selection.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Ayuko,,Hoshino
| | Sample_contact_email | ayukohoshino@hotmail.com
| | Sample_contact_institute | The University of Tokyo
| | Sample_contact_address | 6-5-1 Kashiwanoha
| | Sample_contact_city | Kashiwa
| | Sample_contact_state | Chiba
| | Sample_contact_zip/postal_code | 277-8577
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM641nnn/GSM641870/suppl/GSM641870.CEL.gz
| | Sample_series_id | GSE26146
| | Sample_data_row_count | 54675
| | |
|
GSM641871 | GPL570 |
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cultured human vascular adventitial fibroblasts, biological rep1
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human lung cancer patient resected lung
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tissue: lung
cell type: tissue-derived fibroblasts
|
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| Sample_geo_accession | GSM641871
| | Sample_status | Public on Dec 18 2010
| | Sample_submission_date | Dec 17 2010
| | Sample_last_update_date | Dec 18 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | cells were plated at the density of 1x104 cells/cm2 and harvested at semi-confluence
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the Affymetrix 3' IVT Express Kit protocol from 100ng of total RNA
| | Sample_hyb_protocol | The procedures for target hybridization, washing, and staining with signal amplification were conducted according to the supplier's protocols.
| | Sample_scan_protocol | The arrays were scanned with a GeneChip Scanner 3000 (Affymetrix)
| | Sample_data_processing | Intensity of each feature of the array was calculated using GeneChip Operating Software, version 1.1.1 (Affymetrix). The average intensity was standardized to the target intensity, which was set equal to 1,000, to reliably compare various multiple arrays. The values were log-transformed and median-centered. The programs GeneSpring (Agilent Technologies, Santa Clara, CA, http://www.agilent.com) and Excel (Microsoft, Redmond, WA, http://www.microsoft.com) were used to perform the numerical analysis to permit gene selection.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Ayuko,,Hoshino
| | Sample_contact_email | ayukohoshino@hotmail.com
| | Sample_contact_institute | The University of Tokyo
| | Sample_contact_address | 6-5-1 Kashiwanoha
| | Sample_contact_city | Kashiwa
| | Sample_contact_state | Chiba
| | Sample_contact_zip/postal_code | 277-8577
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM641nnn/GSM641871/suppl/GSM641871.CEL.gz
| | Sample_series_id | GSE26146
| | Sample_data_row_count | 54675
| | |
|
GSM641872 | GPL570 |
|
cultured human vascular adventitial fibroblasts, biological rep2
|
human lung cancer patient resected lung
|
tissue: lung
cell type: tissue-derived fibroblasts
|
|
| Sample_geo_accession | GSM641872
| | Sample_status | Public on Dec 18 2010
| | Sample_submission_date | Dec 17 2010
| | Sample_last_update_date | Dec 18 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | cells were plated at the density of 1x104 cells/cm2 and harvested at semi-confluence
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the Affymetrix 3' IVT Express Kit protocol from 100ng of total RNA
| | Sample_hyb_protocol | The procedures for target hybridization, washing, and staining with signal amplification were conducted according to the supplier's protocols.
| | Sample_scan_protocol | The arrays were scanned with a GeneChip Scanner 3000 (Affymetrix)
| | Sample_data_processing | Intensity of each feature of the array was calculated using GeneChip Operating Software, version 1.1.1 (Affymetrix). The average intensity was standardized to the target intensity, which was set equal to 1,000, to reliably compare various multiple arrays. The values were log-transformed and median-centered. The programs GeneSpring (Agilent Technologies, Santa Clara, CA, http://www.agilent.com) and Excel (Microsoft, Redmond, WA, http://www.microsoft.com) were used to perform the numerical analysis to permit gene selection.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Ayuko,,Hoshino
| | Sample_contact_email | ayukohoshino@hotmail.com
| | Sample_contact_institute | The University of Tokyo
| | Sample_contact_address | 6-5-1 Kashiwanoha
| | Sample_contact_city | Kashiwa
| | Sample_contact_state | Chiba
| | Sample_contact_zip/postal_code | 277-8577
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM641nnn/GSM641872/suppl/GSM641872.CEL.gz
| | Sample_series_id | GSE26146
| | Sample_data_row_count | 54675
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