Search results for the GEO ID: GSE26156  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM642299 | GPL570 |
|
DP_15
|
human thymi obtained as surgical tissue discard from pediatric patients
|
developmental stage: Double Positive T cells
|
gene expression data from human thymocytes subsets (DP, CD4+/CD8+; SP CD4+, CD4+/CD8-)
|
| Sample_geo_accession | GSM642299
| | Sample_status | Public on Oct 27 2011
| | Sample_submission_date | Dec 17 2010
| | Sample_last_update_date | Oct 27 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Thymi from two to three patients were pooled for each replicate. Three biological replicates for each sample were hybridized on the arrays.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin/phycoeritrin-coniugated streptoavidin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared according to the standard Affymetrix protocol from 1 µg of total RNA. The biotinylated cRNA was then purified, fragmented, hybridized on the array, and labelled with phycoeritrin-coniugated streptoavidin.
| | Sample_hyb_protocol | Following fragmentation, biotinylated cRNA was hybridized for 16 hr at 45C on Human genome U-133 PLUS microarray (Affymetrix). The hybridization, the washing steps and the labelling with phycoeritrin-coniugated streptoavidin were automatically performed by the gene-Chip Fluidic Station (Affymetrix).
| | Sample_scan_protocol | Affymetrix GCOS
| | Sample_data_processing | The data were analyzed with BRB Array Tools version 3.6 using RMA as normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Alberto,,Corradin
| | Sample_contact_email | acorradin@dei.unipd.it
| | Sample_contact_department | Dipertimento di Ingegneria dell'Informazione
| | Sample_contact_institute | Università degli Studi di Padova
| | Sample_contact_address | via Tiepolo
| | Sample_contact_city | Padova
| | Sample_contact_state | PD
| | Sample_contact_zip/postal_code | 35100
| | Sample_contact_country | Italy
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM642nnn/GSM642299/suppl/GSM642299.CEL.gz
| | Sample_series_id | GSE26156
| | Sample_series_id | GSE26158
| | Sample_data_row_count | 54675
| | |
|
GSM642300 | GPL570 |
|
DP_16
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human thymi obtained as surgical tissue discard from pediatric patients
|
developmental stage: Double Positive T cells
|
gene expression data from human thymocytes subsets (DP, CD4+/CD8+; SP CD4+, CD4+/CD8-)
|
| Sample_geo_accession | GSM642300
| | Sample_status | Public on Oct 27 2011
| | Sample_submission_date | Dec 17 2010
| | Sample_last_update_date | Oct 27 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Thymi from two to three patients were pooled for each replicate. Three biological replicates for each sample were hybridized on the arrays.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin/phycoeritrin-coniugated streptoavidin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared according to the standard Affymetrix protocol from 1 µg of total RNA. The biotinylated cRNA was then purified, fragmented, hybridized on the array, and labelled with phycoeritrin-coniugated streptoavidin.
| | Sample_hyb_protocol | Following fragmentation, biotinylated cRNA was hybridized for 16 hr at 45C on Human genome U-133 PLUS microarray (Affymetrix). The hybridization, the washing steps and the labelling with phycoeritrin-coniugated streptoavidin were automatically performed by the gene-Chip Fluidic Station (Affymetrix).
| | Sample_scan_protocol | Affymetrix GCOS
| | Sample_data_processing | The data were analyzed with BRB Array Tools version 3.6 using RMA as normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Alberto,,Corradin
| | Sample_contact_email | acorradin@dei.unipd.it
| | Sample_contact_department | Dipertimento di Ingegneria dell'Informazione
| | Sample_contact_institute | Università degli Studi di Padova
| | Sample_contact_address | via Tiepolo
| | Sample_contact_city | Padova
| | Sample_contact_state | PD
| | Sample_contact_zip/postal_code | 35100
| | Sample_contact_country | Italy
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM642nnn/GSM642300/suppl/GSM642300.CEL.gz
| | Sample_series_id | GSE26156
| | Sample_series_id | GSE26158
| | Sample_data_row_count | 54675
| | |
|
GSM642301 | GPL570 |
|
DP_17
|
human thymi obtained as surgical tissue discard from pediatric patients
|
developmental stage: Double Positive T cells
|
gene expression data from human thymocytes subsets (DP, CD4+/CD8+; SP CD4+, CD4+/CD8-)
|
| Sample_geo_accession | GSM642301
| | Sample_status | Public on Oct 27 2011
| | Sample_submission_date | Dec 17 2010
| | Sample_last_update_date | Oct 27 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Thymi from two to three patients were pooled for each replicate. Three biological replicates for each sample were hybridized on the arrays.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin/phycoeritrin-coniugated streptoavidin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared according to the standard Affymetrix protocol from 1 µg of total RNA. The biotinylated cRNA was then purified, fragmented, hybridized on the array, and labelled with phycoeritrin-coniugated streptoavidin.
| | Sample_hyb_protocol | Following fragmentation, biotinylated cRNA was hybridized for 16 hr at 45C on Human genome U-133 PLUS microarray (Affymetrix). The hybridization, the washing steps and the labelling with phycoeritrin-coniugated streptoavidin were automatically performed by the gene-Chip Fluidic Station (Affymetrix).
| | Sample_scan_protocol | Affymetrix GCOS
| | Sample_data_processing | The data were analyzed with BRB Array Tools version 3.6 using RMA as normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Alberto,,Corradin
| | Sample_contact_email | acorradin@dei.unipd.it
| | Sample_contact_department | Dipertimento di Ingegneria dell'Informazione
| | Sample_contact_institute | Università degli Studi di Padova
| | Sample_contact_address | via Tiepolo
| | Sample_contact_city | Padova
| | Sample_contact_state | PD
| | Sample_contact_zip/postal_code | 35100
| | Sample_contact_country | Italy
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM642nnn/GSM642301/suppl/GSM642301.CEL.gz
| | Sample_series_id | GSE26156
| | Sample_series_id | GSE26158
| | Sample_data_row_count | 54675
| | |
|
GSM642302 | GPL570 |
|
SP_1
|
human thymi obtained as surgical tissue discard from pediatric patients
|
developmental stage: Single Positive CD4 T cells
|
gene expression data from human thymocytes subsets (DP, CD4+/CD8+; SP CD4+, CD4+/CD8-)
|
| Sample_geo_accession | GSM642302
| | Sample_status | Public on Oct 27 2011
| | Sample_submission_date | Dec 17 2010
| | Sample_last_update_date | Oct 27 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Thymi from two to three patients were pooled for each replicate. Three biological replicates for each sample were hybridized on the arrays.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin/phycoeritrin-coniugated streptoavidin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared according to the standard Affymetrix protocol from 1 µg of total RNA. The biotinylated cRNA was then purified, fragmented, hybridized on the array, and labelled with phycoeritrin-coniugated streptoavidin.
| | Sample_hyb_protocol | Following fragmentation, biotinylated cRNA was hybridized for 16 hr at 45C on Human genome U-133 PLUS microarray (Affymetrix). The hybridization, the washing steps and the labelling with phycoeritrin-coniugated streptoavidin were automatically performed by the gene-Chip Fluidic Station (Affymetrix).
| | Sample_scan_protocol | Affymetrix GCOS
| | Sample_data_processing | The data were analyzed with BRB Array Tools version 3.6 using RMA as normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Alberto,,Corradin
| | Sample_contact_email | acorradin@dei.unipd.it
| | Sample_contact_department | Dipertimento di Ingegneria dell'Informazione
| | Sample_contact_institute | Università degli Studi di Padova
| | Sample_contact_address | via Tiepolo
| | Sample_contact_city | Padova
| | Sample_contact_state | PD
| | Sample_contact_zip/postal_code | 35100
| | Sample_contact_country | Italy
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM642nnn/GSM642302/suppl/GSM642302.CEL.gz
| | Sample_series_id | GSE26156
| | Sample_series_id | GSE26158
| | Sample_data_row_count | 54675
| | |
|
GSM642303 | GPL570 |
|
SP_2
|
human thymi obtained as surgical tissue discard from pediatric patients
|
developmental stage: Single Positive CD4 T cells
|
gene expression data from human thymocytes subsets (DP, CD4+/CD8+; SP CD4+, CD4+/CD8-)
|
| Sample_geo_accession | GSM642303
| | Sample_status | Public on Oct 27 2011
| | Sample_submission_date | Dec 17 2010
| | Sample_last_update_date | Oct 27 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Thymi from two to three patients were pooled for each replicate. Three biological replicates for each sample were hybridized on the arrays.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin/phycoeritrin-coniugated streptoavidin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared according to the standard Affymetrix protocol from 1 µg of total RNA. The biotinylated cRNA was then purified, fragmented, hybridized on the array, and labelled with phycoeritrin-coniugated streptoavidin.
| | Sample_hyb_protocol | Following fragmentation, biotinylated cRNA was hybridized for 16 hr at 45C on Human genome U-133 PLUS microarray (Affymetrix). The hybridization, the washing steps and the labelling with phycoeritrin-coniugated streptoavidin were automatically performed by the gene-Chip Fluidic Station (Affymetrix).
| | Sample_scan_protocol | Affymetrix GCOS
| | Sample_data_processing | The data were analyzed with BRB Array Tools version 3.6 using RMA as normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Alberto,,Corradin
| | Sample_contact_email | acorradin@dei.unipd.it
| | Sample_contact_department | Dipertimento di Ingegneria dell'Informazione
| | Sample_contact_institute | Università degli Studi di Padova
| | Sample_contact_address | via Tiepolo
| | Sample_contact_city | Padova
| | Sample_contact_state | PD
| | Sample_contact_zip/postal_code | 35100
| | Sample_contact_country | Italy
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM642nnn/GSM642303/suppl/GSM642303.CEL.gz
| | Sample_series_id | GSE26156
| | Sample_series_id | GSE26158
| | Sample_data_row_count | 54675
| | |
|
GSM642304 | GPL570 |
|
SP_5
|
human thymi obtained as surgical tissue discard from pediatric patients
|
developmental stage: Single Positive CD4 T cells
|
gene expression data from human thymocytes subsets (DP, CD4+/CD8+; SP CD4+, CD4+/CD8-)
|
| Sample_geo_accession | GSM642304
| | Sample_status | Public on Oct 27 2011
| | Sample_submission_date | Dec 17 2010
| | Sample_last_update_date | Oct 27 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Thymi from two to three patients were pooled for each replicate. Three biological replicates for each sample were hybridized on the arrays.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin/phycoeritrin-coniugated streptoavidin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared according to the standard Affymetrix protocol from 1 µg of total RNA. The biotinylated cRNA was then purified, fragmented, hybridized on the array, and labelled with phycoeritrin-coniugated streptoavidin.
| | Sample_hyb_protocol | Following fragmentation, biotinylated cRNA was hybridized for 16 hr at 45C on Human genome U-133 PLUS microarray (Affymetrix). The hybridization, the washing steps and the labelling with phycoeritrin-coniugated streptoavidin were automatically performed by the gene-Chip Fluidic Station (Affymetrix).
| | Sample_scan_protocol | Affymetrix GCOS
| | Sample_data_processing | The data were analyzed with BRB Array Tools version 3.6 using RMA as normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Alberto,,Corradin
| | Sample_contact_email | acorradin@dei.unipd.it
| | Sample_contact_department | Dipertimento di Ingegneria dell'Informazione
| | Sample_contact_institute | Università degli Studi di Padova
| | Sample_contact_address | via Tiepolo
| | Sample_contact_city | Padova
| | Sample_contact_state | PD
| | Sample_contact_zip/postal_code | 35100
| | Sample_contact_country | Italy
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM642nnn/GSM642304/suppl/GSM642304.CEL.gz
| | Sample_series_id | GSE26156
| | Sample_series_id | GSE26158
| | Sample_data_row_count | 54675
| | |
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