Search results for the GEO ID: GSE26176  |
(Click on the check boxes provided under "Select for analysis", to initiate grouping) |
(Once the selection is made, click on "Add groups" in "Make groups for comparison", to make a group. Scroll down) |
|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM642846 | GPL570 |
|
W12 cervical ectokeratinocytes, Series 1 passage 19 (p19) #1
|
W12 passage 19 replicate 1 of 3
|
gender: Female
cell line: W12 cervical ectokeratinocytes
anatomical site: Cervix
passage: 19 (p19)
|
W12 cervical ectokeratinocytes; a model that recapitulates features of neoplastic progression in vitro; originally described in Stanley et al 1989, PMID 2467886
W12 Series 1 passage 19 (p19) #1
|
| Sample_geo_accession | GSM642846
| | Sample_status | Public on May 25 2011
| | Sample_submission_date | Dec 20 2010
| | Sample_last_update_date | May 25 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Nil; pre-treatment
| | Sample_growth_protocol_ch1 | Cell lines cultured under standard tissue culture conditions - incubated at 37C and in 5% CO2, with feeder cells - described in Stanley et al 1989, PMID 2467886
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | TRIzol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | As per published paper: Palmer et al, Cancer Research 2008:68;4239-47; PMID 18519683
| | Sample_hyb_protocol | As per published paper: Palmer et al, Cancer Research 2008:68;4239-47; PMID 18519683
| | Sample_scan_protocol | As per published paper: Palmer et al, Cancer Research 2008:68;4239-47; PMID 18519683
| | Sample_data_processing | Pre-processing of microarray data (including background correction and normalization) was performed using the GeneChip Robust Multi-array Averaging (GC-RMA) method included in the Bioconductor package affy for the statistical software environment R. Data were analysed using the Linear Model for Microarray data, employing the Bioconductor package limma.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Matthew,Jonathan,Murray
| | Sample_contact_email | mjm16@cam.ac.uk
| | Sample_contact_phone | 07976413769
| | Sample_contact_laboratory | 2.5
| | Sample_contact_department | MRC/Hutchison Research Centre
| | Sample_contact_institute | MRC Cancer Cell Unit
| | Sample_contact_address | Box 197, Hills Road
| | Sample_contact_city | Cambridge
| | Sample_contact_zip/postal_code | CB2 0XZ
| | Sample_contact_country | United Kingdom
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM642nnn/GSM642846/suppl/GSM642846.CEL.gz
| | Sample_series_id | GSE26176
| | Sample_series_id | GSE26177
| | Sample_data_row_count | 54675
| | |
|
GSM642847 | GPL570 |
|
W12 cervical ectokeratinocytes, Series 1 passage 19 (p19) #2
|
W12 passage 19 replicate 2 of 3
|
gender: Female
cell line: W12 cervical ectokeratinocytes
anatomical site: Cervix
passage: 19 (p19)
|
W12 cervical ectokeratinocytes; a model that recapitulates features of neoplastic progression in vitro; originally described in Stanley et al 1989, PMID 2467886
W12 Series 1 passage 19 (p19) #2
|
| Sample_geo_accession | GSM642847
| | Sample_status | Public on May 25 2011
| | Sample_submission_date | Dec 20 2010
| | Sample_last_update_date | May 25 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Nil; pre-treatment
| | Sample_growth_protocol_ch1 | Cell lines cultured under standard tissue culture conditions - incubated at 37C and in 5% CO2, with feeder cells - described in Stanley et al 1989, PMID 2467886
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | TRIzol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | As per published paper: Palmer et al, Cancer Research 2008:68;4239-47; PMID 18519683
| | Sample_hyb_protocol | As per published paper: Palmer et al, Cancer Research 2008:68;4239-47; PMID 18519683
| | Sample_scan_protocol | As per published paper: Palmer et al, Cancer Research 2008:68;4239-47; PMID 18519683
| | Sample_data_processing | Pre-processing of microarray data (including background correction and normalization) was performed using the GeneChip Robust Multi-array Averaging (GC-RMA) method included in the Bioconductor package affy for the statistical software environment R. Data were analysed using the Linear Model for Microarray data, employing the Bioconductor package limma.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Matthew,Jonathan,Murray
| | Sample_contact_email | mjm16@cam.ac.uk
| | Sample_contact_phone | 07976413769
| | Sample_contact_laboratory | 2.5
| | Sample_contact_department | MRC/Hutchison Research Centre
| | Sample_contact_institute | MRC Cancer Cell Unit
| | Sample_contact_address | Box 197, Hills Road
| | Sample_contact_city | Cambridge
| | Sample_contact_zip/postal_code | CB2 0XZ
| | Sample_contact_country | United Kingdom
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM642nnn/GSM642847/suppl/GSM642847.CEL.gz
| | Sample_series_id | GSE26176
| | Sample_series_id | GSE26177
| | Sample_data_row_count | 54675
| | |
|
GSM642848 | GPL570 |
|
W12 cervical ectokeratinocytes, Series 1 passage 19 (p19) #3
|
W12 passage 19 replicate 3 of 3
|
gender: Female
cell line: W12 cervical ectokeratinocytes
anatomical site: Cervix
passage: 19 (p19)
|
W12 cervical ectokeratinocytes; a model that recapitulates features of neoplastic progression in vitro; originally described in Stanley et al 1989, PMID 2467886
W12 Series 1 passage 19 (p19) #3
|
| Sample_geo_accession | GSM642848
| | Sample_status | Public on May 25 2011
| | Sample_submission_date | Dec 20 2010
| | Sample_last_update_date | May 25 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Nil; pre-treatment
| | Sample_growth_protocol_ch1 | Cell lines cultured under standard tissue culture conditions - incubated at 37C and in 5% CO2, with feeder cells - described in Stanley et al 1989, PMID 2467886
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | TRIzol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | As per published paper: Palmer et al, Cancer Research 2008:68;4239-47; PMID 18519683
| | Sample_hyb_protocol | As per published paper: Palmer et al, Cancer Research 2008:68;4239-47; PMID 18519683
| | Sample_scan_protocol | As per published paper: Palmer et al, Cancer Research 2008:68;4239-47; PMID 18519683
| | Sample_data_processing | Pre-processing of microarray data (including background correction and normalization) was performed using the GeneChip Robust Multi-array Averaging (GC-RMA) method included in the Bioconductor package affy for the statistical software environment R. Data were analysed using the Linear Model for Microarray data, employing the Bioconductor package limma.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Matthew,Jonathan,Murray
| | Sample_contact_email | mjm16@cam.ac.uk
| | Sample_contact_phone | 07976413769
| | Sample_contact_laboratory | 2.5
| | Sample_contact_department | MRC/Hutchison Research Centre
| | Sample_contact_institute | MRC Cancer Cell Unit
| | Sample_contact_address | Box 197, Hills Road
| | Sample_contact_city | Cambridge
| | Sample_contact_zip/postal_code | CB2 0XZ
| | Sample_contact_country | United Kingdom
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM642nnn/GSM642848/suppl/GSM642848.CEL.gz
| | Sample_series_id | GSE26176
| | Sample_series_id | GSE26177
| | Sample_data_row_count | 54675
| | |
|
GSM642849 | GPL570 |
|
W12 cervical ectokeratinocytes, Series 1 passage 22 (p22) #1
|
W12 passage 22 replicate 1 of 3
|
gender: Female
cell line: W12 cervical ectokeratinocytes
anatomical site: Cervix
passage: 22 (p22)
|
W12 cervical ectokeratinocytes; a model that recapitulates features of neoplastic progression in vitro; originally described in Stanley et al 1989, PMID 2467886
W12 Series 1 passage 22 (p22) #1
|
| Sample_geo_accession | GSM642849
| | Sample_status | Public on May 25 2011
| | Sample_submission_date | Dec 20 2010
| | Sample_last_update_date | May 25 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Nil; pre-treatment
| | Sample_growth_protocol_ch1 | Cell lines cultured under standard tissue culture conditions - incubated at 37C and in 5% CO2, with feeder cells - described in Stanley et al 1989, PMID 2467886
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | TRIzol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | As per published paper: Palmer et al, Cancer Research 2008:68;4239-47; PMID 18519683
| | Sample_hyb_protocol | As per published paper: Palmer et al, Cancer Research 2008:68;4239-47; PMID 18519683
| | Sample_scan_protocol | As per published paper: Palmer et al, Cancer Research 2008:68;4239-47; PMID 18519683
| | Sample_data_processing | Pre-processing of microarray data (including background correction and normalization) was performed using the GeneChip Robust Multi-array Averaging (GC-RMA) method included in the Bioconductor package affy for the statistical software environment R. Data were analysed using the Linear Model for Microarray data, employing the Bioconductor package limma.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Matthew,Jonathan,Murray
| | Sample_contact_email | mjm16@cam.ac.uk
| | Sample_contact_phone | 07976413769
| | Sample_contact_laboratory | 2.5
| | Sample_contact_department | MRC/Hutchison Research Centre
| | Sample_contact_institute | MRC Cancer Cell Unit
| | Sample_contact_address | Box 197, Hills Road
| | Sample_contact_city | Cambridge
| | Sample_contact_zip/postal_code | CB2 0XZ
| | Sample_contact_country | United Kingdom
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM642nnn/GSM642849/suppl/GSM642849.CEL.gz
| | Sample_series_id | GSE26176
| | Sample_series_id | GSE26177
| | Sample_data_row_count | 54675
| | |
|
GSM642850 | GPL570 |
|
W12 cervical ectokeratinocytes, Series 1 passage 22 (p22) #2
|
W12 passage 22 replicate 2 of 3
|
gender: Female
cell line: W12 cervical ectokeratinocytes
anatomical site: Cervix
passage: 22 (p22)
|
W12 cervical ectokeratinocytes; a model that recapitulates features of neoplastic progression in vitro; originally described in Stanley et al 1989, PMID 2467886
W12 Series 1 passage 22 (p22) #2
|
| Sample_geo_accession | GSM642850
| | Sample_status | Public on May 25 2011
| | Sample_submission_date | Dec 20 2010
| | Sample_last_update_date | May 25 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Nil; pre-treatment
| | Sample_growth_protocol_ch1 | Cell lines cultured under standard tissue culture conditions - incubated at 37C and in 5% CO2, with feeder cells - described in Stanley et al 1989, PMID 2467886
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | TRIzol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | As per published paper: Palmer et al, Cancer Research 2008:68;4239-47; PMID 18519683
| | Sample_hyb_protocol | As per published paper: Palmer et al, Cancer Research 2008:68;4239-47; PMID 18519683
| | Sample_scan_protocol | As per published paper: Palmer et al, Cancer Research 2008:68;4239-47; PMID 18519683
| | Sample_data_processing | Pre-processing of microarray data (including background correction and normalization) was performed using the GeneChip Robust Multi-array Averaging (GC-RMA) method included in the Bioconductor package affy for the statistical software environment R. Data were analysed using the Linear Model for Microarray data, employing the Bioconductor package limma.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Matthew,Jonathan,Murray
| | Sample_contact_email | mjm16@cam.ac.uk
| | Sample_contact_phone | 07976413769
| | Sample_contact_laboratory | 2.5
| | Sample_contact_department | MRC/Hutchison Research Centre
| | Sample_contact_institute | MRC Cancer Cell Unit
| | Sample_contact_address | Box 197, Hills Road
| | Sample_contact_city | Cambridge
| | Sample_contact_zip/postal_code | CB2 0XZ
| | Sample_contact_country | United Kingdom
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM642nnn/GSM642850/suppl/GSM642850.CEL.gz
| | Sample_series_id | GSE26176
| | Sample_series_id | GSE26177
| | Sample_data_row_count | 54675
| | |
|
GSM642851 | GPL570 |
|
W12 cervical ectokeratinocytes, Series 1 passage 22 (p22) #3
|
W12 passage 22 replicate 3 of 3
|
gender: Female
cell line: W12 cervical ectokeratinocytes
anatomical site: Cervix
passage: 22 (p22)
|
W12 cervical ectokeratinocytes; a model that recapitulates features of neoplastic progression in vitro; originally described in Stanley et al 1989, PMID 2467886
W12 Series 1 passage 22 (p22) #3
|
| Sample_geo_accession | GSM642851
| | Sample_status | Public on May 25 2011
| | Sample_submission_date | Dec 20 2010
| | Sample_last_update_date | May 25 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Nil; pre-treatment
| | Sample_growth_protocol_ch1 | Cell lines cultured under standard tissue culture conditions - incubated at 37C and in 5% CO2, with feeder cells - described in Stanley et al 1989, PMID 2467886
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | TRIzol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | As per published paper: Palmer et al, Cancer Research 2008:68;4239-47; PMID 18519683
| | Sample_hyb_protocol | As per published paper: Palmer et al, Cancer Research 2008:68;4239-47; PMID 18519683
| | Sample_scan_protocol | As per published paper: Palmer et al, Cancer Research 2008:68;4239-47; PMID 18519683
| | Sample_data_processing | Pre-processing of microarray data (including background correction and normalization) was performed using the GeneChip Robust Multi-array Averaging (GC-RMA) method included in the Bioconductor package affy for the statistical software environment R. Data were analysed using the Linear Model for Microarray data, employing the Bioconductor package limma.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Matthew,Jonathan,Murray
| | Sample_contact_email | mjm16@cam.ac.uk
| | Sample_contact_phone | 07976413769
| | Sample_contact_laboratory | 2.5
| | Sample_contact_department | MRC/Hutchison Research Centre
| | Sample_contact_institute | MRC Cancer Cell Unit
| | Sample_contact_address | Box 197, Hills Road
| | Sample_contact_city | Cambridge
| | Sample_contact_zip/postal_code | CB2 0XZ
| | Sample_contact_country | United Kingdom
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM642nnn/GSM642851/suppl/GSM642851.CEL.gz
| | Sample_series_id | GSE26176
| | Sample_series_id | GSE26177
| | Sample_data_row_count | 54675
| | |
|
| |
| |
Make groups for comparisons |
(2 groups will be compared at a time) |
|
| Select GSMs and click on "Add groups" |
Enter the group name here: |
|
|
|
