Result

Search results for the GEO ID: GSE26225

(Click on the check boxes provided under "Select for analysis", to initiate grouping)

(Once the selection is made, click on "Add groups" in "Make groups for comparison", to make a group. Scroll down)

GSM ID

GPL ID

Select for analysis

Title

Source name

Description

Characteristics

GSM643861

GPL1261

AB6F1 male, biological rep1

06-6653

strain: AJ dam x B6 sire tissue: Liver genotype/variation: AB6F1 age: 9 months

Gene expression data from 9-month-old mouse liver

Sample_geo_accession	GSM643861
Sample_status	Public on Jan 05 2011
Sample_submission_date	Dec 21 2010
Sample_last_update_date	Jan 05 2011
Sample_type	RNA
Sample_channel_count	1
Sample_organism_ch1	Mus musculus
Sample_taxid_ch1	10090
Sample_treatment_protocol_ch1	F1 mice were raised on chow diet under standard conditions in SPF facility. There was no experimental intervention.
Sample_growth_protocol_ch1	N/A
Sample_molecule_ch1	total RNA
Sample_extract_protocol_ch1	Trizol extraction of total RNA was performed according to the manufacturer's instructions.
Sample_label_ch1	biotin
Sample_label_protocol_ch1	Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
Sample_hyb_protocol	Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix GeneChip Mouse Genome 430A 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
Sample_scan_protocol	GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
Sample_data_processing	The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
Sample_platform_id	GPL1261
Sample_contact_name	Arlin,B,Rogers
Sample_contact_email	abr@med.unc.edu
Sample_contact_phone	919-843-8088
Sample_contact_fax	919-966-7911
Sample_contact_department	Lineberger Comprehensive Cancer Center
Sample_contact_institute	University of North Carolina
Sample_contact_address	Campus Box 7431
Sample_contact_city	Chapel Hill
Sample_contact_state	NC
Sample_contact_zip/postal_code	27599-7431
Sample_contact_country	USA
Sample_contact_web_link	http://cancer.unc.edu/research/faculty/displayMember.asp?ID=602
Sample_supplementary_file	ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM643nnn/GSM643861/suppl/GSM643861_A6280-06-6653.CEL.gz
Sample_series_id	GSE26225
Sample_data_row_count	45101

GSM643862

GPL1261

AB6F1 male, biological rep2

06-6654

strain: AJ dam x B6 sire tissue: Liver genotype/variation: AB6F1 age: 9 months

Gene expression data from 9-month-old mouse liver

Sample_geo_accession	GSM643862
Sample_status	Public on Jan 05 2011
Sample_submission_date	Dec 21 2010
Sample_last_update_date	Jan 05 2011
Sample_type	RNA
Sample_channel_count	1
Sample_organism_ch1	Mus musculus
Sample_taxid_ch1	10090
Sample_treatment_protocol_ch1	F1 mice were raised on chow diet under standard conditions in SPF facility. There was no experimental intervention.
Sample_growth_protocol_ch1	N/A
Sample_molecule_ch1	total RNA
Sample_extract_protocol_ch1	Trizol extraction of total RNA was performed according to the manufacturer's instructions.
Sample_label_ch1	biotin
Sample_label_protocol_ch1	Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
Sample_hyb_protocol	Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix GeneChip Mouse Genome 430A 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
Sample_scan_protocol	GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
Sample_data_processing	The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
Sample_platform_id	GPL1261
Sample_contact_name	Arlin,B,Rogers
Sample_contact_email	abr@med.unc.edu
Sample_contact_phone	919-843-8088
Sample_contact_fax	919-966-7911
Sample_contact_department	Lineberger Comprehensive Cancer Center
Sample_contact_institute	University of North Carolina
Sample_contact_address	Campus Box 7431
Sample_contact_city	Chapel Hill
Sample_contact_state	NC
Sample_contact_zip/postal_code	27599-7431
Sample_contact_country	USA
Sample_contact_web_link	http://cancer.unc.edu/research/faculty/displayMember.asp?ID=602
Sample_supplementary_file	ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM643nnn/GSM643862/suppl/GSM643862_A6281-06-6654.CEL.gz
Sample_series_id	GSE26225
Sample_data_row_count	45101

GSM643863

GPL1261

B6AF1 male, biological rep1

06-7021

strain: B6 dam x AJ sire tissue: Liver genotype/variation: B6AF1 age: 9 months

Gene expression data from 9-month-old mouse liver

Sample_geo_accession	GSM643863
Sample_status	Public on Jan 05 2011
Sample_submission_date	Dec 21 2010
Sample_last_update_date	Jan 05 2011
Sample_type	RNA
Sample_channel_count	1
Sample_organism_ch1	Mus musculus
Sample_taxid_ch1	10090
Sample_treatment_protocol_ch1	F1 mice were raised on chow diet under standard conditions in SPF facility. There was no experimental intervention.
Sample_growth_protocol_ch1	N/A
Sample_molecule_ch1	total RNA
Sample_extract_protocol_ch1	Trizol extraction of total RNA was performed according to the manufacturer's instructions.
Sample_label_ch1	biotin
Sample_label_protocol_ch1	Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
Sample_hyb_protocol	Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix GeneChip Mouse Genome 430A 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
Sample_scan_protocol	GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
Sample_data_processing	The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
Sample_platform_id	GPL1261
Sample_contact_name	Arlin,B,Rogers
Sample_contact_email	abr@med.unc.edu
Sample_contact_phone	919-843-8088
Sample_contact_fax	919-966-7911
Sample_contact_department	Lineberger Comprehensive Cancer Center
Sample_contact_institute	University of North Carolina
Sample_contact_address	Campus Box 7431
Sample_contact_city	Chapel Hill
Sample_contact_state	NC
Sample_contact_zip/postal_code	27599-7431
Sample_contact_country	USA
Sample_contact_web_link	http://cancer.unc.edu/research/faculty/displayMember.asp?ID=602
Sample_supplementary_file	ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM643nnn/GSM643863/suppl/GSM643863_A6282-06-7021.CEL.gz
Sample_series_id	GSE26225
Sample_data_row_count	45101

GSM643864

GPL1261

B6AF1 male, biological rep2

06-7023

strain: B6 dam x AJ sire tissue: Liver genotype/variation: B6AF1 age: 9 months

Gene expression data from 9-month-old mouse liver

Sample_geo_accession	GSM643864
Sample_status	Public on Jan 05 2011
Sample_submission_date	Dec 21 2010
Sample_last_update_date	Jan 05 2011
Sample_type	RNA
Sample_channel_count	1
Sample_organism_ch1	Mus musculus
Sample_taxid_ch1	10090
Sample_treatment_protocol_ch1	F1 mice were raised on chow diet under standard conditions in SPF facility. There was no experimental intervention.
Sample_growth_protocol_ch1	N/A
Sample_molecule_ch1	total RNA
Sample_extract_protocol_ch1	Trizol extraction of total RNA was performed according to the manufacturer's instructions.
Sample_label_ch1	biotin
Sample_label_protocol_ch1	Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
Sample_hyb_protocol	Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix GeneChip Mouse Genome 430A 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
Sample_scan_protocol	GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
Sample_data_processing	The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
Sample_platform_id	GPL1261
Sample_contact_name	Arlin,B,Rogers
Sample_contact_email	abr@med.unc.edu
Sample_contact_phone	919-843-8088
Sample_contact_fax	919-966-7911
Sample_contact_department	Lineberger Comprehensive Cancer Center
Sample_contact_institute	University of North Carolina
Sample_contact_address	Campus Box 7431
Sample_contact_city	Chapel Hill
Sample_contact_state	NC
Sample_contact_zip/postal_code	27599-7431
Sample_contact_country	USA
Sample_contact_web_link	http://cancer.unc.edu/research/faculty/displayMember.asp?ID=602
Sample_supplementary_file	ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM643nnn/GSM643864/suppl/GSM643864_A6283-06-7023.CEL.gz
Sample_series_id	GSE26225
Sample_data_row_count	45101

Make groups for comparisons

(2 groups will be compared at a time)

Select GSMs and click on "Add groups"

Enter the group name here:

Select expression type

Transcripts profile based on;

A. Differential status (Up/Down regulation)

B. Absolute calls (Transcribed/Not-detected)

Filter results by number of probes