Search results for the GEO ID: GSE26272  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM645185 | GPL570 |
|
Control MSC, biological rep1 (H4D-1)
|
Human control MSCs
|
patient: 1
cell type: mesenchymal stem cells (MSCs)
genotype/variation: control
|
Gene expression data from patient 1 control MSCs
H4D-1
|
| Sample_geo_accession | GSM645185
| | Sample_status | Public on Dec 22 2010
| | Sample_submission_date | Dec 22 2010
| | Sample_last_update_date | Dec 22 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Human primary MSCs are infected with lentivirus for overexpressing ZNF145 to generate ZNF145-MSCs
| | Sample_growth_protocol_ch1 | Human MSCs are isolated and purified from bone marrow, and cultured under standard condition.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 3.5 ug total RNA (Expression Analysis Technical Manual, 2004, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on HG_U133_plus 2. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using GenechipR Scanner 3000.
| | Sample_data_processing | The data were analyzed with Genespring Ver 7.3 using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Tongming,,Liu
| | Sample_contact_email | dbsliutm@yahoo.com
| | Sample_contact_department | Dept of Orthopaedic Surgery
| | Sample_contact_institute | National University of Singapore
| | Sample_contact_address | Lower Kent Ridge Road
| | Sample_contact_city | Singapore
| | Sample_contact_zip/postal_code | 119074
| | Sample_contact_country | Singapore
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM645nnn/GSM645185/suppl/GSM645185.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM645nnn/GSM645185/suppl/GSM645185.CHP.gz
| | Sample_series_id | GSE26272
| | Sample_data_row_count | 54675
| | |
|
GSM645186 | GPL570 |
|
Control MSC, biological rep1 (H4D-2)
|
Human control MSCs
|
patient: 1
cell type: mesenchymal stem cells (MSCs)
genotype/variation: control
|
Gene expression data from patient 1 control MSCs
H4D-2
|
| Sample_geo_accession | GSM645186
| | Sample_status | Public on Dec 22 2010
| | Sample_submission_date | Dec 22 2010
| | Sample_last_update_date | Dec 22 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Human primary MSCs are infected with lentivirus for overexpressing ZNF145 to generate ZNF145-MSCs
| | Sample_growth_protocol_ch1 | Human MSCs are isolated and purified from bone marrow, and cultured under standard condition.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 3.5 ug total RNA (Expression Analysis Technical Manual, 2004, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on HG_U133_plus 2. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using GenechipR Scanner 3000.
| | Sample_data_processing | The data were analyzed with Genespring Ver 7.3 using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Tongming,,Liu
| | Sample_contact_email | dbsliutm@yahoo.com
| | Sample_contact_department | Dept of Orthopaedic Surgery
| | Sample_contact_institute | National University of Singapore
| | Sample_contact_address | Lower Kent Ridge Road
| | Sample_contact_city | Singapore
| | Sample_contact_zip/postal_code | 119074
| | Sample_contact_country | Singapore
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM645nnn/GSM645186/suppl/GSM645186.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM645nnn/GSM645186/suppl/GSM645186.CHP.gz
| | Sample_series_id | GSE26272
| | Sample_data_row_count | 54675
| | |
|
GSM645187 | GPL570 |
|
ZNF145 MSC, biological rep1 (H4Z-1)
|
Human ZNF145-MSCs
|
patient: 1
cell type: mesenchymal stem cells (MSCs)
genotype/variation: ZNF145-overexpressin
|
Gene expression data from patient 1 ZNF145-MSCs
H4Z-1
|
| Sample_geo_accession | GSM645187
| | Sample_status | Public on Dec 22 2010
| | Sample_submission_date | Dec 22 2010
| | Sample_last_update_date | Dec 22 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Human primary MSCs are infected with lentivirus for overexpressing ZNF145 to generate ZNF145-MSCs
| | Sample_growth_protocol_ch1 | Human MSCs are isolated and purified from bone marrow, and cultured under standard condition.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 3.5 ug total RNA (Expression Analysis Technical Manual, 2004, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on HG_U133_plus 2. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using GenechipR Scanner 3000.
| | Sample_data_processing | The data were analyzed with Genespring Ver 7.3 using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Tongming,,Liu
| | Sample_contact_email | dbsliutm@yahoo.com
| | Sample_contact_department | Dept of Orthopaedic Surgery
| | Sample_contact_institute | National University of Singapore
| | Sample_contact_address | Lower Kent Ridge Road
| | Sample_contact_city | Singapore
| | Sample_contact_zip/postal_code | 119074
| | Sample_contact_country | Singapore
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM645nnn/GSM645187/suppl/GSM645187.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM645nnn/GSM645187/suppl/GSM645187.CHP.gz
| | Sample_series_id | GSE26272
| | Sample_data_row_count | 54675
| | |
|
GSM645188 | GPL570 |
|
ZNF145 MSC, biological rep1 (H4Z-2)
|
Human ZNF145-MSCs
|
patient: 1
cell type: mesenchymal stem cells (MSCs)
genotype/variation: ZNF145-overexpressin
|
Gene expression data from patient 1 ZNF145-MSCs
H4Z-2
|
| Sample_geo_accession | GSM645188
| | Sample_status | Public on Dec 22 2010
| | Sample_submission_date | Dec 22 2010
| | Sample_last_update_date | Dec 22 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Human primary MSCs are infected with lentivirus for overexpressing ZNF145 to generate ZNF145-MSCs
| | Sample_growth_protocol_ch1 | Human MSCs are isolated and purified from bone marrow, and cultured under standard condition.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 3.5 ug total RNA (Expression Analysis Technical Manual, 2004, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on HG_U133_plus 2. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using GenechipR Scanner 3000.
| | Sample_data_processing | The data were analyzed with Genespring Ver 7.3 using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Tongming,,Liu
| | Sample_contact_email | dbsliutm@yahoo.com
| | Sample_contact_department | Dept of Orthopaedic Surgery
| | Sample_contact_institute | National University of Singapore
| | Sample_contact_address | Lower Kent Ridge Road
| | Sample_contact_city | Singapore
| | Sample_contact_zip/postal_code | 119074
| | Sample_contact_country | Singapore
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM645nnn/GSM645188/suppl/GSM645188.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM645nnn/GSM645188/suppl/GSM645188.CHP.gz
| | Sample_series_id | GSE26272
| | Sample_data_row_count | 54675
| | |
|
GSM645189 | GPL570 |
|
Control MSC, biological rep2 (H5D-1)
|
Human control MSCs
|
patient: 2
cell type: mesenchymal stem cells (MSCs)
genotype/variation: control
|
Gene expression data from patient 2 control MSCs
H5D-1
|
| Sample_geo_accession | GSM645189
| | Sample_status | Public on Dec 22 2010
| | Sample_submission_date | Dec 22 2010
| | Sample_last_update_date | Dec 22 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Human primary MSCs are infected with lentivirus for overexpressing ZNF145 to generate ZNF145-MSCs
| | Sample_growth_protocol_ch1 | Human MSCs are isolated and purified from bone marrow, and cultured under standard condition.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 3.5 ug total RNA (Expression Analysis Technical Manual, 2004, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on HG_U133_plus 2. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using GenechipR Scanner 3000.
| | Sample_data_processing | The data were analyzed with Genespring Ver 7.3 using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Tongming,,Liu
| | Sample_contact_email | dbsliutm@yahoo.com
| | Sample_contact_department | Dept of Orthopaedic Surgery
| | Sample_contact_institute | National University of Singapore
| | Sample_contact_address | Lower Kent Ridge Road
| | Sample_contact_city | Singapore
| | Sample_contact_zip/postal_code | 119074
| | Sample_contact_country | Singapore
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM645nnn/GSM645189/suppl/GSM645189.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM645nnn/GSM645189/suppl/GSM645189.CHP.gz
| | Sample_series_id | GSE26272
| | Sample_data_row_count | 54675
| | |
|
GSM645190 | GPL570 |
|
Control MSC, biological rep2 (H5D-2)
|
Human control MSCs
|
patient: 2
cell type: mesenchymal stem cells (MSCs)
genotype/variation: control
|
Gene expression data from patient 2 control MSCs
H5D-2
|
| Sample_geo_accession | GSM645190
| | Sample_status | Public on Dec 22 2010
| | Sample_submission_date | Dec 22 2010
| | Sample_last_update_date | Dec 22 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Human primary MSCs are infected with lentivirus for overexpressing ZNF145 to generate ZNF145-MSCs
| | Sample_growth_protocol_ch1 | Human MSCs are isolated and purified from bone marrow, and cultured under standard condition.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 3.5 ug total RNA (Expression Analysis Technical Manual, 2004, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on HG_U133_plus 2. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using GenechipR Scanner 3000.
| | Sample_data_processing | The data were analyzed with Genespring Ver 7.3 using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Tongming,,Liu
| | Sample_contact_email | dbsliutm@yahoo.com
| | Sample_contact_department | Dept of Orthopaedic Surgery
| | Sample_contact_institute | National University of Singapore
| | Sample_contact_address | Lower Kent Ridge Road
| | Sample_contact_city | Singapore
| | Sample_contact_zip/postal_code | 119074
| | Sample_contact_country | Singapore
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM645nnn/GSM645190/suppl/GSM645190.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM645nnn/GSM645190/suppl/GSM645190.CHP.gz
| | Sample_series_id | GSE26272
| | Sample_data_row_count | 54675
| | |
|
GSM645191 | GPL570 |
|
ZNF145 MSC, biological rep2 (H5Z-1)
|
Human ZNF145-MSCs
|
patient: 2
cell type: mesenchymal stem cells (MSCs)
genotype/variation: ZNF145-overexpressin
|
Gene expression data from patient 2 ZNF145-MSCs
H5Z-1
|
| Sample_geo_accession | GSM645191
| | Sample_status | Public on Dec 22 2010
| | Sample_submission_date | Dec 22 2010
| | Sample_last_update_date | Dec 22 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Human primary MSCs are infected with lentivirus for overexpressing ZNF145 to generate ZNF145-MSCs
| | Sample_growth_protocol_ch1 | Human MSCs are isolated and purified from bone marrow, and cultured under standard condition.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 3.5 ug total RNA (Expression Analysis Technical Manual, 2004, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on HG_U133_plus 2. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using GenechipR Scanner 3000.
| | Sample_data_processing | The data were analyzed with Genespring Ver 7.3 using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Tongming,,Liu
| | Sample_contact_email | dbsliutm@yahoo.com
| | Sample_contact_department | Dept of Orthopaedic Surgery
| | Sample_contact_institute | National University of Singapore
| | Sample_contact_address | Lower Kent Ridge Road
| | Sample_contact_city | Singapore
| | Sample_contact_zip/postal_code | 119074
| | Sample_contact_country | Singapore
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM645nnn/GSM645191/suppl/GSM645191.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM645nnn/GSM645191/suppl/GSM645191.CHP.gz
| | Sample_series_id | GSE26272
| | Sample_data_row_count | 54675
| | |
|
GSM645192 | GPL570 |
|
ZNF145 MSC, biological rep2 (H5Z-2)
|
Human ZNF145-MSCs
|
patient: 2
cell type: mesenchymal stem cells (MSCs)
genotype/variation: ZNF145-overexpressin
|
Gene expression data from patient 2 ZNF145-MSCs
H5Z-2
|
| Sample_geo_accession | GSM645192
| | Sample_status | Public on Dec 22 2010
| | Sample_submission_date | Dec 22 2010
| | Sample_last_update_date | Dec 22 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Human primary MSCs are infected with lentivirus for overexpressing ZNF145 to generate ZNF145-MSCs
| | Sample_growth_protocol_ch1 | Human MSCs are isolated and purified from bone marrow, and cultured under standard condition.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 3.5 ug total RNA (Expression Analysis Technical Manual, 2004, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on HG_U133_plus 2. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using GenechipR Scanner 3000.
| | Sample_data_processing | The data were analyzed with Genespring Ver 7.3 using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Tongming,,Liu
| | Sample_contact_email | dbsliutm@yahoo.com
| | Sample_contact_department | Dept of Orthopaedic Surgery
| | Sample_contact_institute | National University of Singapore
| | Sample_contact_address | Lower Kent Ridge Road
| | Sample_contact_city | Singapore
| | Sample_contact_zip/postal_code | 119074
| | Sample_contact_country | Singapore
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM645nnn/GSM645192/suppl/GSM645192.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM645nnn/GSM645192/suppl/GSM645192.CHP.gz
| | Sample_series_id | GSE26272
| | Sample_data_row_count | 54675
| | |
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