Search results for the GEO ID: GSE26332  |
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GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM646668 | GPL570 |
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C4-2_miR-99a
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miR-99a transfection, 48hr
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cell line: C4-2
cell type: prostate cancer
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| Sample_geo_accession | GSM646668
| | Sample_status | Public on Dec 29 2010
| | Sample_submission_date | Dec 28 2010
| | Sample_last_update_date | Dec 29 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | siRNA transfection using RNAiMax for 48hr.
| | Sample_growth_protocol_ch1 | RMPI 1640, 10%FBS
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extraction is according to the manufacturer's instructions (Invitrogen) using Trizol reagent.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Labeling and hybridyzation was performed accoding to the affymetrix protocol.
| | Sample_hyb_protocol | Total RNAs were hybridized to the Human HG-U133_Plus_2 array as described in the Affymetrix GeneChIP protocol (Affymetrix).
| | Sample_scan_protocol | Each microarray was scanned, visualized, and analyzed for the level of each individual transcript using a GeneChIP Scanner 3000 and GeneChIP Operating Software (GCOS; Affymetrix). Transcript signal was mapped against the chromosome coordinates (probe-by-probe basis) using the HG-U133_Plus_2 Annotations, CSV provided by the manufacturer (Affymetrix)
| | Sample_data_processing | Each microarray was scanned and analyzed for signal intensities by GeneChIP Scanner 3000 and GeneChIP operating software software (Affymetrix).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Anindya,,Dutta
| | Sample_contact_email | ad8q@virginia.edu
| | Sample_contact_department | Biochemistry and Molecular Genetics
| | Sample_contact_institute | University of Virginia
| | Sample_contact_address | Jordan 1240, Box 800733
| | Sample_contact_city | Charlottesville
| | Sample_contact_state | VA
| | Sample_contact_zip/postal_code | 22908
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM646nnn/GSM646668/suppl/GSM646668.CEL.gz
| | Sample_series_id | GSE26332
| | Sample_data_row_count | 54675
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GSM646669 | GPL570 |
|
C4-2_si-GL2
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si-GL2 transfection, 48hr
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cell line: C4-2
cell type: prostate cancer
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| Sample_geo_accession | GSM646669
| | Sample_status | Public on Dec 29 2010
| | Sample_submission_date | Dec 28 2010
| | Sample_last_update_date | Dec 29 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | siRNA transfection using RNAiMax for 48hr.
| | Sample_growth_protocol_ch1 | RMPI 1640, 10%FBS
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extraction is according to the manufacturer's instructions (Invitrogen) using Trizol reagent.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Labeling and hybridyzation was performed accoding to the affymetrix protocol.
| | Sample_hyb_protocol | Total RNAs were hybridized to the Human HG-U133_Plus_2 array as described in the Affymetrix GeneChIP protocol (Affymetrix).
| | Sample_scan_protocol | Each microarray was scanned, visualized, and analyzed for the level of each individual transcript using a GeneChIP Scanner 3000 and GeneChIP Operating Software (GCOS; Affymetrix). Transcript signal was mapped against the chromosome coordinates (probe-by-probe basis) using the HG-U133_Plus_2 Annotations, CSV provided by the manufacturer (Affymetrix)
| | Sample_data_processing | Each microarray was scanned and analyzed for signal intensities by GeneChIP Scanner 3000 and GeneChIP operating software software (Affymetrix).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Anindya,,Dutta
| | Sample_contact_email | ad8q@virginia.edu
| | Sample_contact_department | Biochemistry and Molecular Genetics
| | Sample_contact_institute | University of Virginia
| | Sample_contact_address | Jordan 1240, Box 800733
| | Sample_contact_city | Charlottesville
| | Sample_contact_state | VA
| | Sample_contact_zip/postal_code | 22908
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM646nnn/GSM646669/suppl/GSM646669.CEL.gz
| | Sample_series_id | GSE26332
| | Sample_data_row_count | 54675
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