Search results for the GEO ID: GSE26403  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM647926 | GPL1261 |
|
Mpl-/- LSK_GFP_1
|
LSK cells
|
strain: C57BL/6J
genotype/variation: Mpl-/-
cell type: LSK cells
protocol: control
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DH50
|
| Sample_geo_accession | GSM647926
| | Sample_status | Public on Jan 03 2011
| | Sample_submission_date | Jan 03 2011
| | Sample_last_update_date | Jan 03 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | LSK cells were isolated using flow cytometry on freshly harvested mouse bone marrow of gene therapy treated mice.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was isolated using RNeasy Micro Kit (Qiagen GmbH, Hilden, Germany)
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotin labeled cRNA generated by amplification of the > 50 ng of RNA using the Nugen Ovation v2 system (Nugen Technologies, AC Bemmel, Netherlands), followed by biotin labeling and fragmentation using the Nugen FL-Ovation Biotin v2 module following the manufacturer's guidelines.
| | Sample_hyb_protocol | Following fragmentation, 3.75 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Mouse 430 2.0 array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000 7G.
| | Sample_data_processing | Summarized probeset data was compiled using RMA (as implemented in the 'affy' package) in R-2.10 using bioconductor packages.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Martijn,,Brugman
| | Sample_contact_email | m.h.brugman@lumc.nl
| | Sample_contact_phone | +31-71-5262180
| | Sample_contact_fax | +31-71-5265267
| | Sample_contact_laboratory | L1-35
| | Sample_contact_department | Immunohematology and Bloodtransfusion
| | Sample_contact_institute | LUMC
| | Sample_contact_address | PO Box 9600
| | Sample_contact_city | Leiden
| | Sample_contact_zip/postal_code | 2300 RC
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM647nnn/GSM647926/suppl/GSM647926.CEL.gz
| | Sample_series_id | GSE26403
| | Sample_data_row_count | 45101
| | |
|
GSM647927 | GPL1261 |
|
Mpl-/- LSK_Mpl_1
|
LSK cells
|
strain: C57BL/6J
genotype/variation: Mpl-/-
cell type: LSK cells
protocol: Mpl transduction
|
DH83
|
| Sample_geo_accession | GSM647927
| | Sample_status | Public on Jan 03 2011
| | Sample_submission_date | Jan 03 2011
| | Sample_last_update_date | Jan 03 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | LSK cells were isolated using flow cytometry on freshly harvested mouse bone marrow of gene therapy treated mice.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was isolated using RNeasy Micro Kit (Qiagen GmbH, Hilden, Germany)
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotin labeled cRNA generated by amplification of the > 50 ng of RNA using the Nugen Ovation v2 system (Nugen Technologies, AC Bemmel, Netherlands), followed by biotin labeling and fragmentation using the Nugen FL-Ovation Biotin v2 module following the manufacturer's guidelines.
| | Sample_hyb_protocol | Following fragmentation, 3.75 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Mouse 430 2.0 array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000 7G.
| | Sample_data_processing | Summarized probeset data was compiled using RMA (as implemented in the 'affy' package) in R-2.10 using bioconductor packages.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Martijn,,Brugman
| | Sample_contact_email | m.h.brugman@lumc.nl
| | Sample_contact_phone | +31-71-5262180
| | Sample_contact_fax | +31-71-5265267
| | Sample_contact_laboratory | L1-35
| | Sample_contact_department | Immunohematology and Bloodtransfusion
| | Sample_contact_institute | LUMC
| | Sample_contact_address | PO Box 9600
| | Sample_contact_city | Leiden
| | Sample_contact_zip/postal_code | 2300 RC
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM647nnn/GSM647927/suppl/GSM647927.CEL.gz
| | Sample_series_id | GSE26403
| | Sample_data_row_count | 45101
| | |
|
GSM647928 | GPL1261 |
|
Mpl-/- LSK_Mpl_2
|
LSK cells
|
strain: C57BL/6J
genotype/variation: Mpl-/-
cell type: LSK cells
protocol: Mpl transduction
|
DH85
|
| Sample_geo_accession | GSM647928
| | Sample_status | Public on Jan 03 2011
| | Sample_submission_date | Jan 03 2011
| | Sample_last_update_date | Jan 03 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | LSK cells were isolated using flow cytometry on freshly harvested mouse bone marrow of gene therapy treated mice.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was isolated using RNeasy Micro Kit (Qiagen GmbH, Hilden, Germany)
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotin labeled cRNA generated by amplification of the > 50 ng of RNA using the Nugen Ovation v2 system (Nugen Technologies, AC Bemmel, Netherlands), followed by biotin labeling and fragmentation using the Nugen FL-Ovation Biotin v2 module following the manufacturer's guidelines.
| | Sample_hyb_protocol | Following fragmentation, 3.75 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Mouse 430 2.0 array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000 7G.
| | Sample_data_processing | Summarized probeset data was compiled using RMA (as implemented in the 'affy' package) in R-2.10 using bioconductor packages.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Martijn,,Brugman
| | Sample_contact_email | m.h.brugman@lumc.nl
| | Sample_contact_phone | +31-71-5262180
| | Sample_contact_fax | +31-71-5265267
| | Sample_contact_laboratory | L1-35
| | Sample_contact_department | Immunohematology and Bloodtransfusion
| | Sample_contact_institute | LUMC
| | Sample_contact_address | PO Box 9600
| | Sample_contact_city | Leiden
| | Sample_contact_zip/postal_code | 2300 RC
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM647nnn/GSM647928/suppl/GSM647928.CEL.gz
| | Sample_series_id | GSE26403
| | Sample_data_row_count | 45101
| | |
|
GSM647929 | GPL1261 |
|
Mpl-/- LSK_Mpl_3
|
LSK cells
|
strain: C57BL/6J
genotype/variation: Mpl-/-
cell type: LSK cells
protocol: Mpl transduction
|
DH91
|
| Sample_geo_accession | GSM647929
| | Sample_status | Public on Jan 03 2011
| | Sample_submission_date | Jan 03 2011
| | Sample_last_update_date | Jan 03 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | LSK cells were isolated using flow cytometry on freshly harvested mouse bone marrow of gene therapy treated mice.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was isolated using RNeasy Micro Kit (Qiagen GmbH, Hilden, Germany)
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotin labeled cRNA generated by amplification of the > 50 ng of RNA using the Nugen Ovation v2 system (Nugen Technologies, AC Bemmel, Netherlands), followed by biotin labeling and fragmentation using the Nugen FL-Ovation Biotin v2 module following the manufacturer's guidelines.
| | Sample_hyb_protocol | Following fragmentation, 3.75 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Mouse 430 2.0 array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000 7G.
| | Sample_data_processing | Summarized probeset data was compiled using RMA (as implemented in the 'affy' package) in R-2.10 using bioconductor packages.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Martijn,,Brugman
| | Sample_contact_email | m.h.brugman@lumc.nl
| | Sample_contact_phone | +31-71-5262180
| | Sample_contact_fax | +31-71-5265267
| | Sample_contact_laboratory | L1-35
| | Sample_contact_department | Immunohematology and Bloodtransfusion
| | Sample_contact_institute | LUMC
| | Sample_contact_address | PO Box 9600
| | Sample_contact_city | Leiden
| | Sample_contact_zip/postal_code | 2300 RC
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM647nnn/GSM647929/suppl/GSM647929.CEL.gz
| | Sample_series_id | GSE26403
| | Sample_data_row_count | 45101
| | |
|
GSM647930 | GPL1261 |
|
Mpl-/- LSK_GFP_2
|
LSK cells
|
strain: C57BL/6J
genotype/variation: Mpl-/-
cell type: LSK cells
protocol: control
|
DH92
|
| Sample_geo_accession | GSM647930
| | Sample_status | Public on Jan 03 2011
| | Sample_submission_date | Jan 03 2011
| | Sample_last_update_date | Jan 03 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | LSK cells were isolated using flow cytometry on freshly harvested mouse bone marrow of gene therapy treated mice.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was isolated using RNeasy Micro Kit (Qiagen GmbH, Hilden, Germany)
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotin labeled cRNA generated by amplification of the > 50 ng of RNA using the Nugen Ovation v2 system (Nugen Technologies, AC Bemmel, Netherlands), followed by biotin labeling and fragmentation using the Nugen FL-Ovation Biotin v2 module following the manufacturer's guidelines.
| | Sample_hyb_protocol | Following fragmentation, 3.75 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Mouse 430 2.0 array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000 7G.
| | Sample_data_processing | Summarized probeset data was compiled using RMA (as implemented in the 'affy' package) in R-2.10 using bioconductor packages.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Martijn,,Brugman
| | Sample_contact_email | m.h.brugman@lumc.nl
| | Sample_contact_phone | +31-71-5262180
| | Sample_contact_fax | +31-71-5265267
| | Sample_contact_laboratory | L1-35
| | Sample_contact_department | Immunohematology and Bloodtransfusion
| | Sample_contact_institute | LUMC
| | Sample_contact_address | PO Box 9600
| | Sample_contact_city | Leiden
| | Sample_contact_zip/postal_code | 2300 RC
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM647nnn/GSM647930/suppl/GSM647930.CEL.gz
| | Sample_series_id | GSE26403
| | Sample_data_row_count | 45101
| | |
|
GSM647931 | GPL1261 |
|
Mpl-/- LSK_GFP_3
|
LSK cells
|
strain: C57BL/6J
genotype/variation: Mpl-/-
cell type: LSK cells
protocol: control
|
DH95
|
| Sample_geo_accession | GSM647931
| | Sample_status | Public on Jan 03 2011
| | Sample_submission_date | Jan 03 2011
| | Sample_last_update_date | Jan 03 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | LSK cells were isolated using flow cytometry on freshly harvested mouse bone marrow of gene therapy treated mice.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was isolated using RNeasy Micro Kit (Qiagen GmbH, Hilden, Germany)
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotin labeled cRNA generated by amplification of the > 50 ng of RNA using the Nugen Ovation v2 system (Nugen Technologies, AC Bemmel, Netherlands), followed by biotin labeling and fragmentation using the Nugen FL-Ovation Biotin v2 module following the manufacturer's guidelines.
| | Sample_hyb_protocol | Following fragmentation, 3.75 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Mouse 430 2.0 array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000 7G.
| | Sample_data_processing | Summarized probeset data was compiled using RMA (as implemented in the 'affy' package) in R-2.10 using bioconductor packages.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Martijn,,Brugman
| | Sample_contact_email | m.h.brugman@lumc.nl
| | Sample_contact_phone | +31-71-5262180
| | Sample_contact_fax | +31-71-5265267
| | Sample_contact_laboratory | L1-35
| | Sample_contact_department | Immunohematology and Bloodtransfusion
| | Sample_contact_institute | LUMC
| | Sample_contact_address | PO Box 9600
| | Sample_contact_city | Leiden
| | Sample_contact_zip/postal_code | 2300 RC
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM647nnn/GSM647931/suppl/GSM647931.CEL.gz
| | Sample_series_id | GSE26403
| | Sample_data_row_count | 45101
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