Search results for the GEO ID: GSE26496  |
(Click on the check boxes provided under "Select for analysis", to initiate grouping) |
(Once the selection is made, click on "Add groups" in "Make groups for comparison", to make a group. Scroll down) |
|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM651414 | GPL1261 |
|
Scap_control1
|
E18.5 total lung RNA, control
|
tissue: lung
strain: mixed background issued from the FVB/N strain and B6
genotype/variation: SREBP cleavage-activating protein gene(Scap) was deleted from respiratory epithelial cells (Scap d/d) in vivo. / control
|
|
| Sample_geo_accession | GSM651414
| | Sample_status | Public on Jan 08 2011
| | Sample_submission_date | Jan 07 2011
| | Sample_last_update_date | Feb 02 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Whole lung total RNA was purified by RNeasy Mini Kit according to the manufacturers protocol (Cat. 74104, Qiagen, Valencia, CA).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | based on Affymetrix protocols
| | Sample_hyb_protocol | The cRNA was then hybridized to the murine genome MOE430 (consists of ≈ 45000 gene entries) chips (Affymetrix, Santa Clara, CA) according to the manufacturer’s protocol.
| | Sample_scan_protocol | Affymetrix Microarray Suite 5.0 was used to scan and quantitate the gene chips under default scan settings.
| | Sample_data_processing | data processed/normalized by algorithm:RMA
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Yan,,Xu
| | Sample_contact_email | yan.xu@cchmc.org
| | Sample_contact_phone | 513-6368921
| | Sample_contact_fax | 513-6367868
| | Sample_contact_institute | Cincinnati Children's Hospital Medical Center
| | Sample_contact_address | 3333 Burnet Ave
| | Sample_contact_city | Cincinnati
| | Sample_contact_state | OH
| | Sample_contact_zip/postal_code | 45229
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM651nnn/GSM651414/suppl/GSM651414.CEL.gz
| | Sample_series_id | GSE26496
| | Sample_data_row_count | 45101
| | |
|
GSM651421 | GPL1261 |
|
Scap_control2
|
E18.5 total lung RNA, control
|
tissue: lung
strain: mixed background issued from the FVB/N strain and B6
genotype/variation: SREBP cleavage-activating protein gene(Scap) was deleted from respiratory epithelial cells (Scap d/d) in vivo. / control
|
|
| Sample_geo_accession | GSM651421
| | Sample_status | Public on Jan 08 2011
| | Sample_submission_date | Jan 07 2011
| | Sample_last_update_date | Feb 02 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Whole lung total RNA was purified by RNeasy Mini Kit according to the manufacturers protocol (Cat. 74104, Qiagen, Valencia, CA).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | based on Affymetrix protocols
| | Sample_hyb_protocol | The cRNA was then hybridized to the murine genome MOE430 (consists of ≈ 45000 gene entries) chips (Affymetrix, Santa Clara, CA) according to the manufacturer’s protocol.
| | Sample_scan_protocol | Affymetrix Microarray Suite 5.0 was used to scan and quantitate the gene chips under default scan settings.
| | Sample_data_processing | data processed/normalized by algorithm:RMA
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Yan,,Xu
| | Sample_contact_email | yan.xu@cchmc.org
| | Sample_contact_phone | 513-6368921
| | Sample_contact_fax | 513-6367868
| | Sample_contact_institute | Cincinnati Children's Hospital Medical Center
| | Sample_contact_address | 3333 Burnet Ave
| | Sample_contact_city | Cincinnati
| | Sample_contact_state | OH
| | Sample_contact_zip/postal_code | 45229
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM651nnn/GSM651421/suppl/GSM651421.CEL.gz
| | Sample_series_id | GSE26496
| | Sample_data_row_count | 45101
| | |
|
GSM651424 | GPL1261 |
|
Scap_control3
|
E18.5 total lung RNA, control
|
tissue: lung
strain: mixed background issued from the FVB/N strain and B6
genotype/variation: SREBP cleavage-activating protein gene(Scap) was deleted from respiratory epithelial cells (Scap d/d) in vivo. / control
|
|
| Sample_geo_accession | GSM651424
| | Sample_status | Public on Jan 08 2011
| | Sample_submission_date | Jan 07 2011
| | Sample_last_update_date | Feb 02 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Whole lung total RNA was purified by RNeasy Mini Kit according to the manufacturers protocol (Cat. 74104, Qiagen, Valencia, CA).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | based on Affymetrix protocols
| | Sample_hyb_protocol | The cRNA was then hybridized to the murine genome MOE430 (consists of ≈ 45000 gene entries) chips (Affymetrix, Santa Clara, CA) according to the manufacturer’s protocol.
| | Sample_scan_protocol | Affymetrix Microarray Suite 5.0 was used to scan and quantitate the gene chips under default scan settings.
| | Sample_data_processing | data processed/normalized by algorithm:RMA
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Yan,,Xu
| | Sample_contact_email | yan.xu@cchmc.org
| | Sample_contact_phone | 513-6368921
| | Sample_contact_fax | 513-6367868
| | Sample_contact_institute | Cincinnati Children's Hospital Medical Center
| | Sample_contact_address | 3333 Burnet Ave
| | Sample_contact_city | Cincinnati
| | Sample_contact_state | OH
| | Sample_contact_zip/postal_code | 45229
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM651nnn/GSM651424/suppl/GSM651424.CEL.gz
| | Sample_series_id | GSE26496
| | Sample_data_row_count | 45101
| | |
|
GSM651428 | GPL1261 |
|
Scap_ko1
|
E18.5 total lung RNA, knockout
|
tissue: lung
strain: mixed background issued from the FVB/N strain and B6
genotype/variation: SREBP cleavage-activating protein gene(Scap) was deleted from respiratory epithelial cells (Scap d/d) in vivo. / knockout
|
|
| Sample_geo_accession | GSM651428
| | Sample_status | Public on Jan 08 2011
| | Sample_submission_date | Jan 07 2011
| | Sample_last_update_date | Feb 02 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Whole lung total RNA was purified by RNeasy Mini Kit according to the manufacturers protocol (Cat. 74104, Qiagen, Valencia, CA).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | based on Affymetrix protocols
| | Sample_hyb_protocol | The cRNA was then hybridized to the murine genome MOE430 (consists of ≈ 45000 gene entries) chips (Affymetrix, Santa Clara, CA) according to the manufacturer’s protocol.
| | Sample_scan_protocol | Affymetrix Microarray Suite 5.0 was used to scan and quantitate the gene chips under default scan settings.
| | Sample_data_processing | data processed/normalized by algorithm:RMA
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Yan,,Xu
| | Sample_contact_email | yan.xu@cchmc.org
| | Sample_contact_phone | 513-6368921
| | Sample_contact_fax | 513-6367868
| | Sample_contact_institute | Cincinnati Children's Hospital Medical Center
| | Sample_contact_address | 3333 Burnet Ave
| | Sample_contact_city | Cincinnati
| | Sample_contact_state | OH
| | Sample_contact_zip/postal_code | 45229
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM651nnn/GSM651428/suppl/GSM651428.CEL.gz
| | Sample_series_id | GSE26496
| | Sample_data_row_count | 45101
| | |
|
GSM651431 | GPL1261 |
|
Scap_ko2
|
E18.5 total lung RNA, knockout
|
tissue: lung
strain: mixed background issued from the FVB/N strain and B6
genotype/variation: SREBP cleavage-activating protein gene(Scap) was deleted from respiratory epithelial cells (Scap d/d) in vivo. / knockout
|
|
| Sample_geo_accession | GSM651431
| | Sample_status | Public on Jan 08 2011
| | Sample_submission_date | Jan 07 2011
| | Sample_last_update_date | Feb 02 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Whole lung total RNA was purified by RNeasy Mini Kit according to the manufacturers protocol (Cat. 74104, Qiagen, Valencia, CA).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | based on Affymetrix protocols
| | Sample_hyb_protocol | The cRNA was then hybridized to the murine genome MOE430 (consists of ≈ 45000 gene entries) chips (Affymetrix, Santa Clara, CA) according to the manufacturer’s protocol.
| | Sample_scan_protocol | Affymetrix Microarray Suite 5.0 was used to scan and quantitate the gene chips under default scan settings.
| | Sample_data_processing | data processed/normalized by algorithm:RMA
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Yan,,Xu
| | Sample_contact_email | yan.xu@cchmc.org
| | Sample_contact_phone | 513-6368921
| | Sample_contact_fax | 513-6367868
| | Sample_contact_institute | Cincinnati Children's Hospital Medical Center
| | Sample_contact_address | 3333 Burnet Ave
| | Sample_contact_city | Cincinnati
| | Sample_contact_state | OH
| | Sample_contact_zip/postal_code | 45229
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM651nnn/GSM651431/suppl/GSM651431.CEL.gz
| | Sample_series_id | GSE26496
| | Sample_data_row_count | 45101
| | |
|
GSM651432 | GPL1261 |
|
Scap_ko3
|
E18.5 total lung RNA, knockout
|
tissue: lung
strain: mixed background issued from the FVB/N strain and B6
genotype/variation: SREBP cleavage-activating protein gene(Scap) was deleted from respiratory epithelial cells (Scap d/d) in vivo. / knockout
|
|
| Sample_geo_accession | GSM651432
| | Sample_status | Public on Jan 08 2011
| | Sample_submission_date | Jan 07 2011
| | Sample_last_update_date | Feb 02 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Whole lung total RNA was purified by RNeasy Mini Kit according to the manufacturers protocol (Cat. 74104, Qiagen, Valencia, CA).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | based on Affymetrix protocols
| | Sample_hyb_protocol | The cRNA was then hybridized to the murine genome MOE430 (consists of ≈ 45000 gene entries) chips (Affymetrix, Santa Clara, CA) according to the manufacturer’s protocol.
| | Sample_scan_protocol | Affymetrix Microarray Suite 5.0 was used to scan and quantitate the gene chips under default scan settings.
| | Sample_data_processing | data processed/normalized by algorithm:RMA
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Yan,,Xu
| | Sample_contact_email | yan.xu@cchmc.org
| | Sample_contact_phone | 513-6368921
| | Sample_contact_fax | 513-6367868
| | Sample_contact_institute | Cincinnati Children's Hospital Medical Center
| | Sample_contact_address | 3333 Burnet Ave
| | Sample_contact_city | Cincinnati
| | Sample_contact_state | OH
| | Sample_contact_zip/postal_code | 45229
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM651nnn/GSM651432/suppl/GSM651432.CEL.gz
| | Sample_series_id | GSE26496
| | Sample_data_row_count | 45101
| | |
|
| |
| |
Make groups for comparisons |
(2 groups will be compared at a time) |
|
| Select GSMs and click on "Add groups" |
Enter the group name here: |
|
|
|
