Search results for the GEO ID: GSE26541  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM652458 | GPL570 |
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HMEC_Tert_shp53_1
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HMEC control
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cell line: HMEC
phenotype: Tert/shp53 control
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| Sample_geo_accession | GSM652458
| | Sample_status | Public on Jan 31 2012
| | Sample_submission_date | Jan 11 2011
| | Sample_last_update_date | Jan 31 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA were extract with with the Qiagen RNeasy minikit (Qiagen), then 250 ng of total RNA were amplified using GeneChip 3' IVT Express Kit from Affymetrix.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | As per manufacturer (Affymetrix)
| | Sample_hyb_protocol | As per manufacturer (Affymetrix)
| | Sample_scan_protocol | The Arrays were scanned using the Gene Chip Scanner 3000. Then CEL files were generated using the Affymetrix GeneChip Command Console software (AGCC) 3.0
| | Sample_data_processing | CHP files were processed using MAS 5.0 analysis algorithm with Affymetrix Expression Console software 1.1
| | Sample_platform_id | GPL570
| | Sample_contact_name | stéphane,,ansieau
| | Sample_contact_email | ansieau@lyon.fnclcc.fr
| | Sample_contact_phone | 0033-478785160
| | Sample_contact_fax | 0033-478782821
| | Sample_contact_department | Centre Léon Bérard
| | Sample_contact_institute | Inserm U590
| | Sample_contact_address | 28 rue Laennec
| | Sample_contact_city | Lyon
| | Sample_contact_zip/postal_code | 69008
| | Sample_contact_country | France
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM652nnn/GSM652458/suppl/GSM652458.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM652nnn/GSM652458/suppl/GSM652458.CHP.gz
| | Sample_series_id | GSE26541
| | Sample_data_row_count | 54675
| | |
|
GSM652459 | GPL570 |
|
HMEC_Tert_shp53_2
|
HMEC control
|
cell line: HMEC
phenotype: Tert/shp53 control
|
|
| Sample_geo_accession | GSM652459
| | Sample_status | Public on Jan 31 2012
| | Sample_submission_date | Jan 11 2011
| | Sample_last_update_date | Jan 31 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA were extract with with the Qiagen RNeasy minikit (Qiagen), then 250 ng of total RNA were amplified using GeneChip 3' IVT Express Kit from Affymetrix.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | As per manufacturer (Affymetrix)
| | Sample_hyb_protocol | As per manufacturer (Affymetrix)
| | Sample_scan_protocol | The Arrays were scanned using the Gene Chip Scanner 3000. Then CEL files were generated using the Affymetrix GeneChip Command Console software (AGCC) 3.0
| | Sample_data_processing | CHP files were processed using MAS 5.0 analysis algorithm with Affymetrix Expression Console software 1.1
| | Sample_platform_id | GPL570
| | Sample_contact_name | stéphane,,ansieau
| | Sample_contact_email | ansieau@lyon.fnclcc.fr
| | Sample_contact_phone | 0033-478785160
| | Sample_contact_fax | 0033-478782821
| | Sample_contact_department | Centre Léon Bérard
| | Sample_contact_institute | Inserm U590
| | Sample_contact_address | 28 rue Laennec
| | Sample_contact_city | Lyon
| | Sample_contact_zip/postal_code | 69008
| | Sample_contact_country | France
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM652nnn/GSM652459/suppl/GSM652459.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM652nnn/GSM652459/suppl/GSM652459.CHP.gz
| | Sample_series_id | GSE26541
| | Sample_data_row_count | 54675
| | |
|
GSM652460 | GPL570 |
|
HMEC_Tert_shp53_Ras_Epi_1
|
HMEC epithelial
|
cell line: HMEC
phenotype: Tert/shp53/Ras/Epi
|
|
| Sample_geo_accession | GSM652460
| | Sample_status | Public on Jan 31 2012
| | Sample_submission_date | Jan 11 2011
| | Sample_last_update_date | Jan 31 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA were extract with with the Qiagen RNeasy minikit (Qiagen), then 250 ng of total RNA were amplified using GeneChip 3' IVT Express Kit from Affymetrix.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | As per manufacturer (Affymetrix)
| | Sample_hyb_protocol | As per manufacturer (Affymetrix)
| | Sample_scan_protocol | The Arrays were scanned using the Gene Chip Scanner 3000. Then CEL files were generated using the Affymetrix GeneChip Command Console software (AGCC) 3.0
| | Sample_data_processing | CHP files were processed using MAS 5.0 analysis algorithm with Affymetrix Expression Console software 1.1
| | Sample_platform_id | GPL570
| | Sample_contact_name | stéphane,,ansieau
| | Sample_contact_email | ansieau@lyon.fnclcc.fr
| | Sample_contact_phone | 0033-478785160
| | Sample_contact_fax | 0033-478782821
| | Sample_contact_department | Centre Léon Bérard
| | Sample_contact_institute | Inserm U590
| | Sample_contact_address | 28 rue Laennec
| | Sample_contact_city | Lyon
| | Sample_contact_zip/postal_code | 69008
| | Sample_contact_country | France
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM652nnn/GSM652460/suppl/GSM652460.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM652nnn/GSM652460/suppl/GSM652460.CHP.gz
| | Sample_series_id | GSE26541
| | Sample_data_row_count | 54675
| | |
|
GSM652461 | GPL570 |
|
HMEC_Tert_shp53_Ras_Epi_2
|
HMEC epithelial
|
cell line: HMEC
phenotype: Tert/shp53/Ras/Epi
|
|
| Sample_geo_accession | GSM652461
| | Sample_status | Public on Jan 31 2012
| | Sample_submission_date | Jan 11 2011
| | Sample_last_update_date | Jan 31 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA were extract with with the Qiagen RNeasy minikit (Qiagen), then 250 ng of total RNA were amplified using GeneChip 3' IVT Express Kit from Affymetrix.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | As per manufacturer (Affymetrix)
| | Sample_hyb_protocol | As per manufacturer (Affymetrix)
| | Sample_scan_protocol | The Arrays were scanned using the Gene Chip Scanner 3000. Then CEL files were generated using the Affymetrix GeneChip Command Console software (AGCC) 3.0
| | Sample_data_processing | CHP files were processed using MAS 5.0 analysis algorithm with Affymetrix Expression Console software 1.1
| | Sample_platform_id | GPL570
| | Sample_contact_name | stéphane,,ansieau
| | Sample_contact_email | ansieau@lyon.fnclcc.fr
| | Sample_contact_phone | 0033-478785160
| | Sample_contact_fax | 0033-478782821
| | Sample_contact_department | Centre Léon Bérard
| | Sample_contact_institute | Inserm U590
| | Sample_contact_address | 28 rue Laennec
| | Sample_contact_city | Lyon
| | Sample_contact_zip/postal_code | 69008
| | Sample_contact_country | France
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM652nnn/GSM652461/suppl/GSM652461.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM652nnn/GSM652461/suppl/GSM652461.CHP.gz
| | Sample_series_id | GSE26541
| | Sample_data_row_count | 54675
| | |
|
GSM652462 | GPL570 |
|
HMEC_Tert_shp53_Ras_Mes_1
|
HMEC mesenchymal
|
cell line: HMEC
phenotype: Tert/shp53/Ras/Mes
|
|
| Sample_geo_accession | GSM652462
| | Sample_status | Public on Jan 31 2012
| | Sample_submission_date | Jan 11 2011
| | Sample_last_update_date | Jan 31 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA were extract with with the Qiagen RNeasy minikit (Qiagen), then 250 ng of total RNA were amplified using GeneChip 3' IVT Express Kit from Affymetrix.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | As per manufacturer (Affymetrix)
| | Sample_hyb_protocol | As per manufacturer (Affymetrix)
| | Sample_scan_protocol | The Arrays were scanned using the Gene Chip Scanner 3000. Then CEL files were generated using the Affymetrix GeneChip Command Console software (AGCC) 3.0
| | Sample_data_processing | CHP files were processed using MAS 5.0 analysis algorithm with Affymetrix Expression Console software 1.1
| | Sample_platform_id | GPL570
| | Sample_contact_name | stéphane,,ansieau
| | Sample_contact_email | ansieau@lyon.fnclcc.fr
| | Sample_contact_phone | 0033-478785160
| | Sample_contact_fax | 0033-478782821
| | Sample_contact_department | Centre Léon Bérard
| | Sample_contact_institute | Inserm U590
| | Sample_contact_address | 28 rue Laennec
| | Sample_contact_city | Lyon
| | Sample_contact_zip/postal_code | 69008
| | Sample_contact_country | France
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM652nnn/GSM652462/suppl/GSM652462.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM652nnn/GSM652462/suppl/GSM652462.CHP.gz
| | Sample_series_id | GSE26541
| | Sample_data_row_count | 54675
| | |
|
GSM652463 | GPL570 |
|
HMEC_Tert_shp53_Ras_Mes_2
|
HMEC mesenchymal
|
cell line: HMEC
phenotype: Tert/shp53/Ras/Mes
|
|
| Sample_geo_accession | GSM652463
| | Sample_status | Public on Jan 31 2012
| | Sample_submission_date | Jan 11 2011
| | Sample_last_update_date | Jan 31 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA were extract with with the Qiagen RNeasy minikit (Qiagen), then 250 ng of total RNA were amplified using GeneChip 3' IVT Express Kit from Affymetrix.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | As per manufacturer (Affymetrix)
| | Sample_hyb_protocol | As per manufacturer (Affymetrix)
| | Sample_scan_protocol | The Arrays were scanned using the Gene Chip Scanner 3000. Then CEL files were generated using the Affymetrix GeneChip Command Console software (AGCC) 3.0
| | Sample_data_processing | CHP files were processed using MAS 5.0 analysis algorithm with Affymetrix Expression Console software 1.1
| | Sample_platform_id | GPL570
| | Sample_contact_name | stéphane,,ansieau
| | Sample_contact_email | ansieau@lyon.fnclcc.fr
| | Sample_contact_phone | 0033-478785160
| | Sample_contact_fax | 0033-478782821
| | Sample_contact_department | Centre Léon Bérard
| | Sample_contact_institute | Inserm U590
| | Sample_contact_address | 28 rue Laennec
| | Sample_contact_city | Lyon
| | Sample_contact_zip/postal_code | 69008
| | Sample_contact_country | France
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM652nnn/GSM652463/suppl/GSM652463.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM652nnn/GSM652463/suppl/GSM652463.CHP.gz
| | Sample_series_id | GSE26541
| | Sample_data_row_count | 54675
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