Search results for the GEO ID: GSE26622  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM655318 | GPL570 |
|
Liver biopsy before immunosuppressive therapy W111P
|
Liver biopsy before immunosuppressive therapy (AFFY_W111P)
|
immunotolerance group: TOL
|
Liver biopsy before immunosuppressive therapy (AFFY_W111P) with a immunotolerance TOL status
|
| Sample_geo_accession | GSM655318
| | Sample_status | Public on Jan 09 2012
| | Sample_submission_date | Jan 13 2011
| | Sample_last_update_date | Jan 09 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | For total RNA extraction cryopreserved liver tissue samples were homogenized in TRIzol reagent (Invitrogen, San Diego, CA, USA) using pestle and nuclease-free 1,5ml reaction tubes (Ambion). Total RNA was then extracted following the manufacturers guidelines and quality was assessed with the Agilent 2100 Bioanalyzer (Agilent Technologies, Santa Clara, USA).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol
| | Sample_hyb_protocol | Standard Affymetrix protocol
| | Sample_scan_protocol | Standard Affymetrix protocol using a Gene chip scanner 3000
| | Sample_data_processing | Data processing cel files were normalized with 'gcrma' function of the Bioconductor package (v2.4) 'gcrma' in R.2.9.1
| | Sample_platform_id | GPL570
| | Sample_contact_name | Juanjo,,Lozano
| | Sample_contact_email | juanjo.lozano@ciberehd.org
| | Sample_contact_department | Plataforma de Bioinformatica
| | Sample_contact_institute | CIBEREHD
| | Sample_contact_address | C/ Rosselló 153
| | Sample_contact_city | Barcelona
| | Sample_contact_zip/postal_code | 08036
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM655nnn/GSM655318/suppl/GSM655318.CEL.gz
| | Sample_series_id | GSE26622
| | Sample_series_id | GSE26627
| | Sample_data_row_count | 54675
| | |
|
GSM655319 | GPL570 |
|
Liver biopsy after immunosuppressive therapy W111PST
|
Liver biopsy after immunosuppressive therapy (AFFY_W111PST)
|
immunotolerance group: TOL POST
|
Liver biopsy after immunosuppressive therapy (AFFY_W111PST) with a TOL POST status
|
| Sample_geo_accession | GSM655319
| | Sample_status | Public on Jan 09 2012
| | Sample_submission_date | Jan 13 2011
| | Sample_last_update_date | Jan 09 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | For total RNA extraction cryopreserved liver tissue samples were homogenized in TRIzol reagent (Invitrogen, San Diego, CA, USA) using pestle and nuclease-free 1,5ml reaction tubes (Ambion). Total RNA was then extracted following the manufacturers guidelines and quality was assessed with the Agilent 2100 Bioanalyzer (Agilent Technologies, Santa Clara, USA).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol
| | Sample_hyb_protocol | Standard Affymetrix protocol
| | Sample_scan_protocol | Standard Affymetrix protocol using a Gene chip scanner 3000
| | Sample_data_processing | Data processing cel files were normalized with 'gcrma' function of the Bioconductor package (v2.4) 'gcrma' in R.2.9.1
| | Sample_platform_id | GPL570
| | Sample_contact_name | Juanjo,,Lozano
| | Sample_contact_email | juanjo.lozano@ciberehd.org
| | Sample_contact_department | Plataforma de Bioinformatica
| | Sample_contact_institute | CIBEREHD
| | Sample_contact_address | C/ Rosselló 153
| | Sample_contact_city | Barcelona
| | Sample_contact_zip/postal_code | 08036
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM655nnn/GSM655319/suppl/GSM655319.CEL.gz
| | Sample_series_id | GSE26622
| | Sample_series_id | GSE26627
| | Sample_data_row_count | 54675
| | |
|
GSM655320 | GPL570 |
|
Liver biopsy before immunosuppressive therapy W113P
|
Liver biopsy before immunosuppressive therapy (AFFY_W113P)
|
immunotolerance group: TOL
|
Liver biopsy before immunosuppressive therapy (AFFY_W113P) with a TOL status
|
| Sample_geo_accession | GSM655320
| | Sample_status | Public on Jan 09 2012
| | Sample_submission_date | Jan 13 2011
| | Sample_last_update_date | Jan 09 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | For total RNA extraction cryopreserved liver tissue samples were homogenized in TRIzol reagent (Invitrogen, San Diego, CA, USA) using pestle and nuclease-free 1,5ml reaction tubes (Ambion). Total RNA was then extracted following the manufacturers guidelines and quality was assessed with the Agilent 2100 Bioanalyzer (Agilent Technologies, Santa Clara, USA).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol
| | Sample_hyb_protocol | Standard Affymetrix protocol
| | Sample_scan_protocol | Standard Affymetrix protocol using a Gene chip scanner 3000
| | Sample_data_processing | Data processing cel files were normalized with 'gcrma' function of the Bioconductor package (v2.4) 'gcrma' in R.2.9.1
| | Sample_platform_id | GPL570
| | Sample_contact_name | Juanjo,,Lozano
| | Sample_contact_email | juanjo.lozano@ciberehd.org
| | Sample_contact_department | Plataforma de Bioinformatica
| | Sample_contact_institute | CIBEREHD
| | Sample_contact_address | C/ Rosselló 153
| | Sample_contact_city | Barcelona
| | Sample_contact_zip/postal_code | 08036
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM655nnn/GSM655320/suppl/GSM655320.CEL.gz
| | Sample_series_id | GSE26622
| | Sample_series_id | GSE26627
| | Sample_data_row_count | 54675
| | |
|
GSM655321 | GPL570 |
|
Liver biopsy after immunosuppressive therapy W113PST
|
Liver biopsy after immunosuppressive therapy (AFFY_W113PST)
|
immunotolerance group: TOL POST
|
Liver biopsy after immunosuppressive therapy (AFFY_W113PST) with a TOL POST status
|
| Sample_geo_accession | GSM655321
| | Sample_status | Public on Jan 09 2012
| | Sample_submission_date | Jan 13 2011
| | Sample_last_update_date | Jan 09 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | For total RNA extraction cryopreserved liver tissue samples were homogenized in TRIzol reagent (Invitrogen, San Diego, CA, USA) using pestle and nuclease-free 1,5ml reaction tubes (Ambion). Total RNA was then extracted following the manufacturers guidelines and quality was assessed with the Agilent 2100 Bioanalyzer (Agilent Technologies, Santa Clara, USA).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol
| | Sample_hyb_protocol | Standard Affymetrix protocol
| | Sample_scan_protocol | Standard Affymetrix protocol using a Gene chip scanner 3000
| | Sample_data_processing | Data processing cel files were normalized with 'gcrma' function of the Bioconductor package (v2.4) 'gcrma' in R.2.9.1
| | Sample_platform_id | GPL570
| | Sample_contact_name | Juanjo,,Lozano
| | Sample_contact_email | juanjo.lozano@ciberehd.org
| | Sample_contact_department | Plataforma de Bioinformatica
| | Sample_contact_institute | CIBEREHD
| | Sample_contact_address | C/ Rosselló 153
| | Sample_contact_city | Barcelona
| | Sample_contact_zip/postal_code | 08036
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM655nnn/GSM655321/suppl/GSM655321.CEL.gz
| | Sample_series_id | GSE26622
| | Sample_series_id | GSE26627
| | Sample_data_row_count | 54675
| | |
|
GSM655322 | GPL570 |
|
Liver biopsy before immunosuppressive therapy W120P
|
Liver biopsy before immunosuppressive therapy (AFFY_W120P)
|
immunotolerance group: TOL
|
Liver biopsy before immunosuppressive therapy (AFFY_W120P) with a TOL status
|
| Sample_geo_accession | GSM655322
| | Sample_status | Public on Jan 09 2012
| | Sample_submission_date | Jan 13 2011
| | Sample_last_update_date | Jan 09 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | For total RNA extraction cryopreserved liver tissue samples were homogenized in TRIzol reagent (Invitrogen, San Diego, CA, USA) using pestle and nuclease-free 1,5ml reaction tubes (Ambion). Total RNA was then extracted following the manufacturers guidelines and quality was assessed with the Agilent 2100 Bioanalyzer (Agilent Technologies, Santa Clara, USA).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol
| | Sample_hyb_protocol | Standard Affymetrix protocol
| | Sample_scan_protocol | Standard Affymetrix protocol using a Gene chip scanner 3000
| | Sample_data_processing | Data processing cel files were normalized with 'gcrma' function of the Bioconductor package (v2.4) 'gcrma' in R.2.9.1
| | Sample_platform_id | GPL570
| | Sample_contact_name | Juanjo,,Lozano
| | Sample_contact_email | juanjo.lozano@ciberehd.org
| | Sample_contact_department | Plataforma de Bioinformatica
| | Sample_contact_institute | CIBEREHD
| | Sample_contact_address | C/ Rosselló 153
| | Sample_contact_city | Barcelona
| | Sample_contact_zip/postal_code | 08036
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM655nnn/GSM655322/suppl/GSM655322.CEL.gz
| | Sample_series_id | GSE26622
| | Sample_series_id | GSE26627
| | Sample_data_row_count | 54675
| | |
|
GSM655323 | GPL570 |
|
Liver biopsy after immunosuppressive therapy W120PST
|
Liver biopsy after immunosuppressive therapy (AFFY_W120PST)
|
immunotolerance group: TOL POST
|
Liver biopsy after immunosuppressive therapy (AFFY_W120PST) with a TOL POST status
|
| Sample_geo_accession | GSM655323
| | Sample_status | Public on Jan 09 2012
| | Sample_submission_date | Jan 13 2011
| | Sample_last_update_date | Jan 09 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | For total RNA extraction cryopreserved liver tissue samples were homogenized in TRIzol reagent (Invitrogen, San Diego, CA, USA) using pestle and nuclease-free 1,5ml reaction tubes (Ambion). Total RNA was then extracted following the manufacturers guidelines and quality was assessed with the Agilent 2100 Bioanalyzer (Agilent Technologies, Santa Clara, USA).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol
| | Sample_hyb_protocol | Standard Affymetrix protocol
| | Sample_scan_protocol | Standard Affymetrix protocol using a Gene chip scanner 3000
| | Sample_data_processing | Data processing cel files were normalized with 'gcrma' function of the Bioconductor package (v2.4) 'gcrma' in R.2.9.1
| | Sample_platform_id | GPL570
| | Sample_contact_name | Juanjo,,Lozano
| | Sample_contact_email | juanjo.lozano@ciberehd.org
| | Sample_contact_department | Plataforma de Bioinformatica
| | Sample_contact_institute | CIBEREHD
| | Sample_contact_address | C/ Rosselló 153
| | Sample_contact_city | Barcelona
| | Sample_contact_zip/postal_code | 08036
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM655nnn/GSM655323/suppl/GSM655323.CEL.gz
| | Sample_series_id | GSE26622
| | Sample_series_id | GSE26627
| | Sample_data_row_count | 54675
| | |
|
GSM655324 | GPL570 |
|
Liver biopsy before immunosuppressive therapy W129P
|
Liver biopsy before immunosuppressive therapy (AFFY_W129P)
|
immunotolerance group: TOL
|
Liver biopsy before immunosuppressive therapy (AFFY_W129P) with a TOL status
|
| Sample_geo_accession | GSM655324
| | Sample_status | Public on Jan 09 2012
| | Sample_submission_date | Jan 13 2011
| | Sample_last_update_date | Jan 09 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | For total RNA extraction cryopreserved liver tissue samples were homogenized in TRIzol reagent (Invitrogen, San Diego, CA, USA) using pestle and nuclease-free 1,5ml reaction tubes (Ambion). Total RNA was then extracted following the manufacturers guidelines and quality was assessed with the Agilent 2100 Bioanalyzer (Agilent Technologies, Santa Clara, USA).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol
| | Sample_hyb_protocol | Standard Affymetrix protocol
| | Sample_scan_protocol | Standard Affymetrix protocol using a Gene chip scanner 3000
| | Sample_data_processing | Data processing cel files were normalized with 'gcrma' function of the Bioconductor package (v2.4) 'gcrma' in R.2.9.1
| | Sample_platform_id | GPL570
| | Sample_contact_name | Juanjo,,Lozano
| | Sample_contact_email | juanjo.lozano@ciberehd.org
| | Sample_contact_department | Plataforma de Bioinformatica
| | Sample_contact_institute | CIBEREHD
| | Sample_contact_address | C/ Rosselló 153
| | Sample_contact_city | Barcelona
| | Sample_contact_zip/postal_code | 08036
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM655nnn/GSM655324/suppl/GSM655324.CEL.gz
| | Sample_series_id | GSE26622
| | Sample_series_id | GSE26627
| | Sample_data_row_count | 54675
| | |
|
GSM655325 | GPL570 |
|
Liver biopsy after immunosuppressive therapy W129PST
|
Liver biopsy after immunosuppressive therapy (AFFY_W129PST)
|
immunotolerance group: TOL POST
|
Liver biopsy after immunosuppressive therapy (AFFY_W129PST) with a TOL POST status
|
| Sample_geo_accession | GSM655325
| | Sample_status | Public on Jan 09 2012
| | Sample_submission_date | Jan 13 2011
| | Sample_last_update_date | Jan 09 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | For total RNA extraction cryopreserved liver tissue samples were homogenized in TRIzol reagent (Invitrogen, San Diego, CA, USA) using pestle and nuclease-free 1,5ml reaction tubes (Ambion). Total RNA was then extracted following the manufacturers guidelines and quality was assessed with the Agilent 2100 Bioanalyzer (Agilent Technologies, Santa Clara, USA).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol
| | Sample_hyb_protocol | Standard Affymetrix protocol
| | Sample_scan_protocol | Standard Affymetrix protocol using a Gene chip scanner 3000
| | Sample_data_processing | Data processing cel files were normalized with 'gcrma' function of the Bioconductor package (v2.4) 'gcrma' in R.2.9.1
| | Sample_platform_id | GPL570
| | Sample_contact_name | Juanjo,,Lozano
| | Sample_contact_email | juanjo.lozano@ciberehd.org
| | Sample_contact_department | Plataforma de Bioinformatica
| | Sample_contact_institute | CIBEREHD
| | Sample_contact_address | C/ Rosselló 153
| | Sample_contact_city | Barcelona
| | Sample_contact_zip/postal_code | 08036
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM655nnn/GSM655325/suppl/GSM655325.CEL.gz
| | Sample_series_id | GSE26622
| | Sample_series_id | GSE26627
| | Sample_data_row_count | 54675
| | |
|
GSM655326 | GPL570 |
|
Liver biopsy before immunosuppressive therapy W1P
|
Liver biopsy before immunosuppressive therapy (AFFY_W1P)
|
immunotolerance group: TOL
|
Liver biopsy before immunosuppressive therapy (AFFY_W1P) with a TOL status
|
| Sample_geo_accession | GSM655326
| | Sample_status | Public on Jan 09 2012
| | Sample_submission_date | Jan 13 2011
| | Sample_last_update_date | Jan 09 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | For total RNA extraction cryopreserved liver tissue samples were homogenized in TRIzol reagent (Invitrogen, San Diego, CA, USA) using pestle and nuclease-free 1,5ml reaction tubes (Ambion). Total RNA was then extracted following the manufacturers guidelines and quality was assessed with the Agilent 2100 Bioanalyzer (Agilent Technologies, Santa Clara, USA).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol
| | Sample_hyb_protocol | Standard Affymetrix protocol
| | Sample_scan_protocol | Standard Affymetrix protocol using a Gene chip scanner 3000
| | Sample_data_processing | Data processing cel files were normalized with 'gcrma' function of the Bioconductor package (v2.4) 'gcrma' in R.2.9.1
| | Sample_platform_id | GPL570
| | Sample_contact_name | Juanjo,,Lozano
| | Sample_contact_email | juanjo.lozano@ciberehd.org
| | Sample_contact_department | Plataforma de Bioinformatica
| | Sample_contact_institute | CIBEREHD
| | Sample_contact_address | C/ Rosselló 153
| | Sample_contact_city | Barcelona
| | Sample_contact_zip/postal_code | 08036
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM655nnn/GSM655326/suppl/GSM655326.CEL.gz
| | Sample_series_id | GSE26622
| | Sample_series_id | GSE26627
| | Sample_data_row_count | 54675
| | |
|
GSM655327 | GPL570 |
|
Liver biopsy before immunosuppressive therapy W20P
|
Liver biopsy before immunosuppressive therapy (AFFY_W20P)
|
immunotolerance group: TOL
|
Liver biopsy before immunosuppressive therapy (AFFY_W20P) with a TOL status
|
| Sample_geo_accession | GSM655327
| | Sample_status | Public on Jan 09 2012
| | Sample_submission_date | Jan 13 2011
| | Sample_last_update_date | Jan 09 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | For total RNA extraction cryopreserved liver tissue samples were homogenized in TRIzol reagent (Invitrogen, San Diego, CA, USA) using pestle and nuclease-free 1,5ml reaction tubes (Ambion). Total RNA was then extracted following the manufacturers guidelines and quality was assessed with the Agilent 2100 Bioanalyzer (Agilent Technologies, Santa Clara, USA).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol
| | Sample_hyb_protocol | Standard Affymetrix protocol
| | Sample_scan_protocol | Standard Affymetrix protocol using a Gene chip scanner 3000
| | Sample_data_processing | Data processing cel files were normalized with 'gcrma' function of the Bioconductor package (v2.4) 'gcrma' in R.2.9.1
| | Sample_platform_id | GPL570
| | Sample_contact_name | Juanjo,,Lozano
| | Sample_contact_email | juanjo.lozano@ciberehd.org
| | Sample_contact_department | Plataforma de Bioinformatica
| | Sample_contact_institute | CIBEREHD
| | Sample_contact_address | C/ Rosselló 153
| | Sample_contact_city | Barcelona
| | Sample_contact_zip/postal_code | 08036
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM655nnn/GSM655327/suppl/GSM655327.CEL.gz
| | Sample_series_id | GSE26622
| | Sample_series_id | GSE26627
| | Sample_data_row_count | 54675
| | |
|
GSM655328 | GPL570 |
|
Liver biopsy after immunosuppressive therapy W20PST
|
Liver biopsy after immunosuppressive therapy (AFFY_W20PST)
|
immunotolerance group: TOL POST
|
Liver biopsy after immunosuppressive therapy (AFFY_W20PST) with a TOL POST status
|
| Sample_geo_accession | GSM655328
| | Sample_status | Public on Jan 09 2012
| | Sample_submission_date | Jan 13 2011
| | Sample_last_update_date | Jan 09 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | For total RNA extraction cryopreserved liver tissue samples were homogenized in TRIzol reagent (Invitrogen, San Diego, CA, USA) using pestle and nuclease-free 1,5ml reaction tubes (Ambion). Total RNA was then extracted following the manufacturers guidelines and quality was assessed with the Agilent 2100 Bioanalyzer (Agilent Technologies, Santa Clara, USA).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol
| | Sample_hyb_protocol | Standard Affymetrix protocol
| | Sample_scan_protocol | Standard Affymetrix protocol using a Gene chip scanner 3000
| | Sample_data_processing | Data processing cel files were normalized with 'gcrma' function of the Bioconductor package (v2.4) 'gcrma' in R.2.9.1
| | Sample_platform_id | GPL570
| | Sample_contact_name | Juanjo,,Lozano
| | Sample_contact_email | juanjo.lozano@ciberehd.org
| | Sample_contact_department | Plataforma de Bioinformatica
| | Sample_contact_institute | CIBEREHD
| | Sample_contact_address | C/ Rosselló 153
| | Sample_contact_city | Barcelona
| | Sample_contact_zip/postal_code | 08036
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM655nnn/GSM655328/suppl/GSM655328.CEL.gz
| | Sample_series_id | GSE26622
| | Sample_series_id | GSE26627
| | Sample_data_row_count | 54675
| | |
|
GSM655329 | GPL570 |
|
Liver biopsy before immunosuppressive therapy W3P
|
Liver biopsy before immunosuppressive therapy (AFFY_W3P)
|
immunotolerance group: TOL
|
Liver biopsy before immunosuppressive therapy (AFFY_W3P) with a TOL status
|
| Sample_geo_accession | GSM655329
| | Sample_status | Public on Jan 09 2012
| | Sample_submission_date | Jan 13 2011
| | Sample_last_update_date | Jan 09 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | For total RNA extraction cryopreserved liver tissue samples were homogenized in TRIzol reagent (Invitrogen, San Diego, CA, USA) using pestle and nuclease-free 1,5ml reaction tubes (Ambion). Total RNA was then extracted following the manufacturers guidelines and quality was assessed with the Agilent 2100 Bioanalyzer (Agilent Technologies, Santa Clara, USA).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol
| | Sample_hyb_protocol | Standard Affymetrix protocol
| | Sample_scan_protocol | Standard Affymetrix protocol using a Gene chip scanner 3000
| | Sample_data_processing | Data processing cel files were normalized with 'gcrma' function of the Bioconductor package (v2.4) 'gcrma' in R.2.9.1
| | Sample_platform_id | GPL570
| | Sample_contact_name | Juanjo,,Lozano
| | Sample_contact_email | juanjo.lozano@ciberehd.org
| | Sample_contact_department | Plataforma de Bioinformatica
| | Sample_contact_institute | CIBEREHD
| | Sample_contact_address | C/ Rosselló 153
| | Sample_contact_city | Barcelona
| | Sample_contact_zip/postal_code | 08036
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM655nnn/GSM655329/suppl/GSM655329.CEL.gz
| | Sample_series_id | GSE26622
| | Sample_series_id | GSE26627
| | Sample_data_row_count | 54675
| | |
|
GSM655330 | GPL570 |
|
Liver biopsy before immunosuppressive therapy W11P
|
Liver biopsy before immunosuppressive therapy (AFFY_W11P)
|
immunotolerance group: Non TOL
|
Liver biopsy before immunosuppressive therapy (AFFY_W11P) with a Non TOL status
|
| Sample_geo_accession | GSM655330
| | Sample_status | Public on Jan 09 2012
| | Sample_submission_date | Jan 13 2011
| | Sample_last_update_date | Jan 09 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | For total RNA extraction cryopreserved liver tissue samples were homogenized in TRIzol reagent (Invitrogen, San Diego, CA, USA) using pestle and nuclease-free 1,5ml reaction tubes (Ambion). Total RNA was then extracted following the manufacturers guidelines and quality was assessed with the Agilent 2100 Bioanalyzer (Agilent Technologies, Santa Clara, USA).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol
| | Sample_hyb_protocol | Standard Affymetrix protocol
| | Sample_scan_protocol | Standard Affymetrix protocol using a Gene chip scanner 3000
| | Sample_data_processing | Data processing cel files were normalized with 'gcrma' function of the Bioconductor package (v2.4) 'gcrma' in R.2.9.1
| | Sample_platform_id | GPL570
| | Sample_contact_name | Juanjo,,Lozano
| | Sample_contact_email | juanjo.lozano@ciberehd.org
| | Sample_contact_department | Plataforma de Bioinformatica
| | Sample_contact_institute | CIBEREHD
| | Sample_contact_address | C/ Rosselló 153
| | Sample_contact_city | Barcelona
| | Sample_contact_zip/postal_code | 08036
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM655nnn/GSM655330/suppl/GSM655330.CEL.gz
| | Sample_series_id | GSE26622
| | Sample_series_id | GSE26627
| | Sample_data_row_count | 54675
| | |
|
GSM655331 | GPL570 |
|
Liver biopsy before immunosuppressive therapy W12P
|
Liver biopsy before immunosuppressive therapy (AFFY_W12P)
|
immunotolerance group: Non TOL
|
Liver biopsy before immunosuppressive therapy (AFFY_W12P) with a Non TOL status
|
| Sample_geo_accession | GSM655331
| | Sample_status | Public on Jan 09 2012
| | Sample_submission_date | Jan 13 2011
| | Sample_last_update_date | Jan 09 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | For total RNA extraction cryopreserved liver tissue samples were homogenized in TRIzol reagent (Invitrogen, San Diego, CA, USA) using pestle and nuclease-free 1,5ml reaction tubes (Ambion). Total RNA was then extracted following the manufacturers guidelines and quality was assessed with the Agilent 2100 Bioanalyzer (Agilent Technologies, Santa Clara, USA).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol
| | Sample_hyb_protocol | Standard Affymetrix protocol
| | Sample_scan_protocol | Standard Affymetrix protocol using a Gene chip scanner 3000
| | Sample_data_processing | Data processing cel files were normalized with 'gcrma' function of the Bioconductor package (v2.4) 'gcrma' in R.2.9.1
| | Sample_platform_id | GPL570
| | Sample_contact_name | Juanjo,,Lozano
| | Sample_contact_email | juanjo.lozano@ciberehd.org
| | Sample_contact_department | Plataforma de Bioinformatica
| | Sample_contact_institute | CIBEREHD
| | Sample_contact_address | C/ Rosselló 153
| | Sample_contact_city | Barcelona
| | Sample_contact_zip/postal_code | 08036
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM655nnn/GSM655331/suppl/GSM655331.CEL.gz
| | Sample_series_id | GSE26622
| | Sample_series_id | GSE26627
| | Sample_data_row_count | 54675
| | |
|
GSM655332 | GPL570 |
|
Liver biopsy before immunosuppressive therapy W15P
|
Liver biopsy before immunosuppressive therapy (AFFY_W15P)
|
immunotolerance group: Non TOL
|
Liver biopsy before immunosuppressive therapy (AFFY_W15P) with a Non TOL status
|
| Sample_geo_accession | GSM655332
| | Sample_status | Public on Jan 09 2012
| | Sample_submission_date | Jan 13 2011
| | Sample_last_update_date | Jan 09 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | For total RNA extraction cryopreserved liver tissue samples were homogenized in TRIzol reagent (Invitrogen, San Diego, CA, USA) using pestle and nuclease-free 1,5ml reaction tubes (Ambion). Total RNA was then extracted following the manufacturers guidelines and quality was assessed with the Agilent 2100 Bioanalyzer (Agilent Technologies, Santa Clara, USA).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol
| | Sample_hyb_protocol | Standard Affymetrix protocol
| | Sample_scan_protocol | Standard Affymetrix protocol using a Gene chip scanner 3000
| | Sample_data_processing | Data processing cel files were normalized with 'gcrma' function of the Bioconductor package (v2.4) 'gcrma' in R.2.9.1
| | Sample_platform_id | GPL570
| | Sample_contact_name | Juanjo,,Lozano
| | Sample_contact_email | juanjo.lozano@ciberehd.org
| | Sample_contact_department | Plataforma de Bioinformatica
| | Sample_contact_institute | CIBEREHD
| | Sample_contact_address | C/ Rosselló 153
| | Sample_contact_city | Barcelona
| | Sample_contact_zip/postal_code | 08036
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM655nnn/GSM655332/suppl/GSM655332.CEL.gz
| | Sample_series_id | GSE26622
| | Sample_series_id | GSE26627
| | Sample_data_row_count | 54675
| | |
|
GSM655333 | GPL570 |
|
Liver biopsy before immunosuppressive therapy W21P
|
Liver biopsy before immunosuppressive therapy (AFFY_W21P)
|
immunotolerance group: Non TOL
|
Liver biopsy before immunosuppressive therapy (AFFY_W21P) with a Non TOL status
|
| Sample_geo_accession | GSM655333
| | Sample_status | Public on Jan 09 2012
| | Sample_submission_date | Jan 13 2011
| | Sample_last_update_date | Jan 09 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | For total RNA extraction cryopreserved liver tissue samples were homogenized in TRIzol reagent (Invitrogen, San Diego, CA, USA) using pestle and nuclease-free 1,5ml reaction tubes (Ambion). Total RNA was then extracted following the manufacturers guidelines and quality was assessed with the Agilent 2100 Bioanalyzer (Agilent Technologies, Santa Clara, USA).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol
| | Sample_hyb_protocol | Standard Affymetrix protocol
| | Sample_scan_protocol | Standard Affymetrix protocol using a Gene chip scanner 3000
| | Sample_data_processing | Data processing cel files were normalized with 'gcrma' function of the Bioconductor package (v2.4) 'gcrma' in R.2.9.1
| | Sample_platform_id | GPL570
| | Sample_contact_name | Juanjo,,Lozano
| | Sample_contact_email | juanjo.lozano@ciberehd.org
| | Sample_contact_department | Plataforma de Bioinformatica
| | Sample_contact_institute | CIBEREHD
| | Sample_contact_address | C/ Rosselló 153
| | Sample_contact_city | Barcelona
| | Sample_contact_zip/postal_code | 08036
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM655nnn/GSM655333/suppl/GSM655333.CEL.gz
| | Sample_series_id | GSE26622
| | Sample_series_id | GSE26627
| | Sample_data_row_count | 54675
| | |
|
GSM655334 | GPL570 |
|
Liver biopsy before immunosuppressive therapy W2P
|
Liver biopsy before immunosuppressive therapy (AFFY_W2P)
|
immunotolerance group: Non TOL
|
Liver biopsy before immunosuppressive therapy (AFFY_W2P) with a Non TOL status
|
| Sample_geo_accession | GSM655334
| | Sample_status | Public on Jan 09 2012
| | Sample_submission_date | Jan 13 2011
| | Sample_last_update_date | Jan 09 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | For total RNA extraction cryopreserved liver tissue samples were homogenized in TRIzol reagent (Invitrogen, San Diego, CA, USA) using pestle and nuclease-free 1,5ml reaction tubes (Ambion). Total RNA was then extracted following the manufacturers guidelines and quality was assessed with the Agilent 2100 Bioanalyzer (Agilent Technologies, Santa Clara, USA).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol
| | Sample_hyb_protocol | Standard Affymetrix protocol
| | Sample_scan_protocol | Standard Affymetrix protocol using a Gene chip scanner 3000
| | Sample_data_processing | Data processing cel files were normalized with 'gcrma' function of the Bioconductor package (v2.4) 'gcrma' in R.2.9.1
| | Sample_platform_id | GPL570
| | Sample_contact_name | Juanjo,,Lozano
| | Sample_contact_email | juanjo.lozano@ciberehd.org
| | Sample_contact_department | Plataforma de Bioinformatica
| | Sample_contact_institute | CIBEREHD
| | Sample_contact_address | C/ Rosselló 153
| | Sample_contact_city | Barcelona
| | Sample_contact_zip/postal_code | 08036
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM655nnn/GSM655334/suppl/GSM655334.CEL.gz
| | Sample_series_id | GSE26622
| | Sample_series_id | GSE26627
| | Sample_data_row_count | 54675
| | |
|
GSM655335 | GPL570 |
|
Liver biopsy before immunosuppressive therapy W37P
|
Liver biopsy before immunosuppressive therapy (AFFY_W37P)
|
immunotolerance group: TOL
|
Liver biopsy before immunosuppressive therapy (AFFY_W37P) with a TOL status
|
| Sample_geo_accession | GSM655335
| | Sample_status | Public on Jan 09 2012
| | Sample_submission_date | Jan 13 2011
| | Sample_last_update_date | Jan 09 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | For total RNA extraction cryopreserved liver tissue samples were homogenized in TRIzol reagent (Invitrogen, San Diego, CA, USA) using pestle and nuclease-free 1,5ml reaction tubes (Ambion). Total RNA was then extracted following the manufacturers guidelines and quality was assessed with the Agilent 2100 Bioanalyzer (Agilent Technologies, Santa Clara, USA).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol
| | Sample_hyb_protocol | Standard Affymetrix protocol
| | Sample_scan_protocol | Standard Affymetrix protocol using a Gene chip scanner 3000
| | Sample_data_processing | Data processing cel files were normalized with 'gcrma' function of the Bioconductor package (v2.4) 'gcrma' in R.2.9.1
| | Sample_platform_id | GPL570
| | Sample_contact_name | Juanjo,,Lozano
| | Sample_contact_email | juanjo.lozano@ciberehd.org
| | Sample_contact_department | Plataforma de Bioinformatica
| | Sample_contact_institute | CIBEREHD
| | Sample_contact_address | C/ Rosselló 153
| | Sample_contact_city | Barcelona
| | Sample_contact_zip/postal_code | 08036
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM655nnn/GSM655335/suppl/GSM655335.CEL.gz
| | Sample_series_id | GSE26622
| | Sample_series_id | GSE26627
| | Sample_data_row_count | 54675
| | |
|
GSM655336 | GPL570 |
|
Liver biopsy before immunosuppressive therapy W40P
|
Liver biopsy before immunosuppressive therapy (AFFY_W40P)
|
immunotolerance group: Non TOL
|
Liver biopsy before immunosuppressive therapy (AFFY_W40P) with a Non TOL status
|
| Sample_geo_accession | GSM655336
| | Sample_status | Public on Jan 09 2012
| | Sample_submission_date | Jan 13 2011
| | Sample_last_update_date | Jan 09 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | For total RNA extraction cryopreserved liver tissue samples were homogenized in TRIzol reagent (Invitrogen, San Diego, CA, USA) using pestle and nuclease-free 1,5ml reaction tubes (Ambion). Total RNA was then extracted following the manufacturers guidelines and quality was assessed with the Agilent 2100 Bioanalyzer (Agilent Technologies, Santa Clara, USA).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol
| | Sample_hyb_protocol | Standard Affymetrix protocol
| | Sample_scan_protocol | Standard Affymetrix protocol using a Gene chip scanner 3000
| | Sample_data_processing | Data processing cel files were normalized with 'gcrma' function of the Bioconductor package (v2.4) 'gcrma' in R.2.9.1
| | Sample_platform_id | GPL570
| | Sample_contact_name | Juanjo,,Lozano
| | Sample_contact_email | juanjo.lozano@ciberehd.org
| | Sample_contact_department | Plataforma de Bioinformatica
| | Sample_contact_institute | CIBEREHD
| | Sample_contact_address | C/ Rosselló 153
| | Sample_contact_city | Barcelona
| | Sample_contact_zip/postal_code | 08036
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM655nnn/GSM655336/suppl/GSM655336.CEL.gz
| | Sample_series_id | GSE26622
| | Sample_series_id | GSE26627
| | Sample_data_row_count | 54675
| | |
|
GSM655337 | GPL570 |
|
Liver biopsy before immunosuppressive therapy W65P
|
Liver biopsy before immunosuppressive therapy (AFFY_W65P)
|
immunotolerance group: Non TOL
|
Liver biopsy before immunosuppressive therapy (AFFY_W65P) with a Non TOL status
|
| Sample_geo_accession | GSM655337
| | Sample_status | Public on Jan 09 2012
| | Sample_submission_date | Jan 13 2011
| | Sample_last_update_date | Jan 09 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | For total RNA extraction cryopreserved liver tissue samples were homogenized in TRIzol reagent (Invitrogen, San Diego, CA, USA) using pestle and nuclease-free 1,5ml reaction tubes (Ambion). Total RNA was then extracted following the manufacturers guidelines and quality was assessed with the Agilent 2100 Bioanalyzer (Agilent Technologies, Santa Clara, USA).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol
| | Sample_hyb_protocol | Standard Affymetrix protocol
| | Sample_scan_protocol | Standard Affymetrix protocol using a Gene chip scanner 3000
| | Sample_data_processing | Data processing cel files were normalized with 'gcrma' function of the Bioconductor package (v2.4) 'gcrma' in R.2.9.1
| | Sample_platform_id | GPL570
| | Sample_contact_name | Juanjo,,Lozano
| | Sample_contact_email | juanjo.lozano@ciberehd.org
| | Sample_contact_department | Plataforma de Bioinformatica
| | Sample_contact_institute | CIBEREHD
| | Sample_contact_address | C/ Rosselló 153
| | Sample_contact_city | Barcelona
| | Sample_contact_zip/postal_code | 08036
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM655nnn/GSM655337/suppl/GSM655337.CEL.gz
| | Sample_series_id | GSE26622
| | Sample_series_id | GSE26627
| | Sample_data_row_count | 54675
| | |
|
GSM655338 | GPL570 |
|
Liver biopsy before immunosuppressive therapy W81P
|
Liver biopsy before immunosuppressive therapy (AFFY_W81P)
|
immunotolerance group: Non TOL
|
Liver biopsy before immunosuppressive therapy (AFFY_W81P) with a Non TOL status
|
| Sample_geo_accession | GSM655338
| | Sample_status | Public on Jan 09 2012
| | Sample_submission_date | Jan 13 2011
| | Sample_last_update_date | Jan 09 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | For total RNA extraction cryopreserved liver tissue samples were homogenized in TRIzol reagent (Invitrogen, San Diego, CA, USA) using pestle and nuclease-free 1,5ml reaction tubes (Ambion). Total RNA was then extracted following the manufacturers guidelines and quality was assessed with the Agilent 2100 Bioanalyzer (Agilent Technologies, Santa Clara, USA).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol
| | Sample_hyb_protocol | Standard Affymetrix protocol
| | Sample_scan_protocol | Standard Affymetrix protocol using a Gene chip scanner 3000
| | Sample_data_processing | Data processing cel files were normalized with 'gcrma' function of the Bioconductor package (v2.4) 'gcrma' in R.2.9.1
| | Sample_platform_id | GPL570
| | Sample_contact_name | Juanjo,,Lozano
| | Sample_contact_email | juanjo.lozano@ciberehd.org
| | Sample_contact_department | Plataforma de Bioinformatica
| | Sample_contact_institute | CIBEREHD
| | Sample_contact_address | C/ Rosselló 153
| | Sample_contact_city | Barcelona
| | Sample_contact_zip/postal_code | 08036
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM655nnn/GSM655338/suppl/GSM655338.CEL.gz
| | Sample_series_id | GSE26622
| | Sample_series_id | GSE26627
| | Sample_data_row_count | 54675
| | |
|
GSM655339 | GPL570 |
|
Liver biopsy before immunosuppressive therapy W83P
|
Liver biopsy before immunosuppressive therapy (AFFY_W83P)
|
immunotolerance group: Non TOL
|
Liver biopsy before immunosuppressive therapy (AFFY_W83P) with a Non TOL status
|
| Sample_geo_accession | GSM655339
| | Sample_status | Public on Jan 09 2012
| | Sample_submission_date | Jan 13 2011
| | Sample_last_update_date | Jan 09 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | For total RNA extraction cryopreserved liver tissue samples were homogenized in TRIzol reagent (Invitrogen, San Diego, CA, USA) using pestle and nuclease-free 1,5ml reaction tubes (Ambion). Total RNA was then extracted following the manufacturers guidelines and quality was assessed with the Agilent 2100 Bioanalyzer (Agilent Technologies, Santa Clara, USA).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol
| | Sample_hyb_protocol | Standard Affymetrix protocol
| | Sample_scan_protocol | Standard Affymetrix protocol using a Gene chip scanner 3000
| | Sample_data_processing | Data processing cel files were normalized with 'gcrma' function of the Bioconductor package (v2.4) 'gcrma' in R.2.9.1
| | Sample_platform_id | GPL570
| | Sample_contact_name | Juanjo,,Lozano
| | Sample_contact_email | juanjo.lozano@ciberehd.org
| | Sample_contact_department | Plataforma de Bioinformatica
| | Sample_contact_institute | CIBEREHD
| | Sample_contact_address | C/ Rosselló 153
| | Sample_contact_city | Barcelona
| | Sample_contact_zip/postal_code | 08036
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM655nnn/GSM655339/suppl/GSM655339.CEL.gz
| | Sample_series_id | GSE26622
| | Sample_series_id | GSE26627
| | Sample_data_row_count | 54675
| | |
|
GSM655340 | GPL570 |
|
Liver biopsy before immunosuppressive therapy W89P
|
Liver biopsy before immunosuppressive therapy (AFFY_W89P)
|
immunotolerance group: Non TOL
|
Liver biopsy before immunosuppressive therapy (AFFY_W89P) with a Non TOL status
|
| Sample_geo_accession | GSM655340
| | Sample_status | Public on Jan 09 2012
| | Sample_submission_date | Jan 13 2011
| | Sample_last_update_date | Jan 09 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | For total RNA extraction cryopreserved liver tissue samples were homogenized in TRIzol reagent (Invitrogen, San Diego, CA, USA) using pestle and nuclease-free 1,5ml reaction tubes (Ambion). Total RNA was then extracted following the manufacturers guidelines and quality was assessed with the Agilent 2100 Bioanalyzer (Agilent Technologies, Santa Clara, USA).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol
| | Sample_hyb_protocol | Standard Affymetrix protocol
| | Sample_scan_protocol | Standard Affymetrix protocol using a Gene chip scanner 3000
| | Sample_data_processing | Data processing cel files were normalized with 'gcrma' function of the Bioconductor package (v2.4) 'gcrma' in R.2.9.1
| | Sample_platform_id | GPL570
| | Sample_contact_name | Juanjo,,Lozano
| | Sample_contact_email | juanjo.lozano@ciberehd.org
| | Sample_contact_department | Plataforma de Bioinformatica
| | Sample_contact_institute | CIBEREHD
| | Sample_contact_address | C/ Rosselló 153
| | Sample_contact_city | Barcelona
| | Sample_contact_zip/postal_code | 08036
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM655nnn/GSM655340/suppl/GSM655340.CEL.gz
| | Sample_series_id | GSE26622
| | Sample_series_id | GSE26627
| | Sample_data_row_count | 54675
| | |
|
GSM655341 | GPL570 |
|
Liver biopsy before immunosuppressive therapy W8P
|
Liver biopsy before immunosuppressive therapy (AFFY_W8P)
|
immunotolerance group: TOL
|
Liver biopsy before immunosuppressive therapy (AFFY_W8P) with a TOL status
|
| Sample_geo_accession | GSM655341
| | Sample_status | Public on Jan 09 2012
| | Sample_submission_date | Jan 13 2011
| | Sample_last_update_date | Jan 09 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | For total RNA extraction cryopreserved liver tissue samples were homogenized in TRIzol reagent (Invitrogen, San Diego, CA, USA) using pestle and nuclease-free 1,5ml reaction tubes (Ambion). Total RNA was then extracted following the manufacturers guidelines and quality was assessed with the Agilent 2100 Bioanalyzer (Agilent Technologies, Santa Clara, USA).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol
| | Sample_hyb_protocol | Standard Affymetrix protocol
| | Sample_scan_protocol | Standard Affymetrix protocol using a Gene chip scanner 3000
| | Sample_data_processing | Data processing cel files were normalized with 'gcrma' function of the Bioconductor package (v2.4) 'gcrma' in R.2.9.1
| | Sample_platform_id | GPL570
| | Sample_contact_name | Juanjo,,Lozano
| | Sample_contact_email | juanjo.lozano@ciberehd.org
| | Sample_contact_department | Plataforma de Bioinformatica
| | Sample_contact_institute | CIBEREHD
| | Sample_contact_address | C/ Rosselló 153
| | Sample_contact_city | Barcelona
| | Sample_contact_zip/postal_code | 08036
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM655nnn/GSM655341/suppl/GSM655341.CEL.gz
| | Sample_series_id | GSE26622
| | Sample_series_id | GSE26627
| | Sample_data_row_count | 54675
| | |
|
| |
| |
Make groups for comparisons |
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