Search results for the GEO ID: GSE26672  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM656433 | GPL570 |
|
BM1i
|
iPS cell line 1i generated from human bone marrow MNC
|
cell type: transgene-free iPSC
|
|
| Sample_geo_accession | GSM656433
| | Sample_status | Public on Feb 04 2011
| | Sample_submission_date | Jan 18 2011
| | Sample_last_update_date | Feb 04 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | DNA was removed by RNase-free DNase treatment using standard procedure.
| | Sample_growth_protocol_ch1 | iPS cells were tranferred from MEF to feeder-free culture system to avoid murine RNA contamination
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Tri reagent (Ambioin) extraction of total RNA was performed according to the manufacturer's instructions. The integrity of RNA was checked by Agilent 2100 Bioanalyzer
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 3 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using an AFX GC3000 G7 scanner.
| | Sample_data_processing | We used the bioconductor package (affy package) to generate the RMA data.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Igor,,Slukvin
| | Sample_contact_email | islukvin@wisc.edu
| | Sample_contact_phone | 608-263-0058
| | Sample_contact_fax | 608-265-8984
| | Sample_contact_department | Department of Pathology and Laboratory Medicine
| | Sample_contact_institute | University of Wisconsin
| | Sample_contact_address | 1220 Capitol Court
| | Sample_contact_city | Madison
| | Sample_contact_state | WI
| | Sample_contact_zip/postal_code | 53706
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM656nnn/GSM656433/suppl/GSM656433_BM1i.CEL.gz
| | Sample_series_id | GSE26672
| | Sample_data_row_count | 54675
| | |
|
GSM656434 | GPL570 |
|
BM1L
|
iPS cell line 1L generated from human bone marrow MNC
|
cell type: transgene-free iPSC
|
|
| Sample_geo_accession | GSM656434
| | Sample_status | Public on Feb 04 2011
| | Sample_submission_date | Jan 18 2011
| | Sample_last_update_date | Feb 04 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | DNA was removed by RNase-free DNase treatment using standard procedure.
| | Sample_growth_protocol_ch1 | iPS cells were tranferred from MEF to feeder-free culture system to avoid murine RNA contamination
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Tri reagent (Ambioin) extraction of total RNA was performed according to the manufacturer's instructions. The integrity of RNA was checked by Agilent 2100 Bioanalyzer
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 3 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using an AFX GC3000 G7 scanner.
| | Sample_data_processing | We used the bioconductor package (affy package) to generate the RMA data.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Igor,,Slukvin
| | Sample_contact_email | islukvin@wisc.edu
| | Sample_contact_phone | 608-263-0058
| | Sample_contact_fax | 608-265-8984
| | Sample_contact_department | Department of Pathology and Laboratory Medicine
| | Sample_contact_institute | University of Wisconsin
| | Sample_contact_address | 1220 Capitol Court
| | Sample_contact_city | Madison
| | Sample_contact_state | WI
| | Sample_contact_zip/postal_code | 53706
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM656nnn/GSM656434/suppl/GSM656434_BM1L.CEL.gz
| | Sample_series_id | GSE26672
| | Sample_data_row_count | 54675
| | |
|
GSM656435 | GPL570 |
|
BM1M
|
iPS cell line 1M generated from human bone marrow MNC
|
cell type: transgene-free iPSC
|
|
| Sample_geo_accession | GSM656435
| | Sample_status | Public on Feb 04 2011
| | Sample_submission_date | Jan 18 2011
| | Sample_last_update_date | Feb 04 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | DNA was removed by RNase-free DNase treatment using standard procedure.
| | Sample_growth_protocol_ch1 | iPS cells were tranferred from MEF to feeder-free culture system to avoid murine RNA contamination
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Tri reagent (Ambioin) extraction of total RNA was performed according to the manufacturer's instructions. The integrity of RNA was checked by Agilent 2100 Bioanalyzer
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 3 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using an AFX GC3000 G7 scanner.
| | Sample_data_processing | We used the bioconductor package (affy package) to generate the RMA data.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Igor,,Slukvin
| | Sample_contact_email | islukvin@wisc.edu
| | Sample_contact_phone | 608-263-0058
| | Sample_contact_fax | 608-265-8984
| | Sample_contact_department | Department of Pathology and Laboratory Medicine
| | Sample_contact_institute | University of Wisconsin
| | Sample_contact_address | 1220 Capitol Court
| | Sample_contact_city | Madison
| | Sample_contact_state | WI
| | Sample_contact_zip/postal_code | 53706
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM656nnn/GSM656435/suppl/GSM656435_BM1M.CEL.gz
| | Sample_series_id | GSE26672
| | Sample_data_row_count | 54675
| | |
|
GSM656436 | GPL570 |
|
BM9
|
iPS cell line 9 generated from human bone marrow MNC
|
cell type: transgene-free iPSC
|
|
| Sample_geo_accession | GSM656436
| | Sample_status | Public on Feb 04 2011
| | Sample_submission_date | Jan 18 2011
| | Sample_last_update_date | Feb 04 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | DNA was removed by RNase-free DNase treatment using standard procedure.
| | Sample_growth_protocol_ch1 | iPS cells were tranferred from MEF to feeder-free culture system to avoid murine RNA contamination
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Tri reagent (Ambioin) extraction of total RNA was performed according to the manufacturer's instructions. The integrity of RNA was checked by Agilent 2100 Bioanalyzer
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 3 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using an AFX GC3000 G7 scanner.
| | Sample_data_processing | We used the bioconductor package (affy package) to generate the RMA data.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Igor,,Slukvin
| | Sample_contact_email | islukvin@wisc.edu
| | Sample_contact_phone | 608-263-0058
| | Sample_contact_fax | 608-265-8984
| | Sample_contact_department | Department of Pathology and Laboratory Medicine
| | Sample_contact_institute | University of Wisconsin
| | Sample_contact_address | 1220 Capitol Court
| | Sample_contact_city | Madison
| | Sample_contact_state | WI
| | Sample_contact_zip/postal_code | 53706
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM656nnn/GSM656436/suppl/GSM656436_BM9.CEL.gz
| | Sample_series_id | GSE26672
| | Sample_data_row_count | 54675
| | |
|
GSM656437 | GPL570 |
|
BM
|
human bone marrow MNC after one day expansion in sera-free media
|
cell type: somatic cells bone marrow
|
|
| Sample_geo_accession | GSM656437
| | Sample_status | Public on Feb 04 2011
| | Sample_submission_date | Jan 18 2011
| | Sample_last_update_date | Feb 04 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | DNA was removed by RNase-free DNase treatment using standard procedure.
| | Sample_growth_protocol_ch1 | iPS cells were tranferred from MEF to feeder-free culture system to avoid murine RNA contamination
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Tri reagent (Ambioin) extraction of total RNA was performed according to the manufacturer's instructions. The integrity of RNA was checked by Agilent 2100 Bioanalyzer
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 3 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using an AFX GC3000 G7 scanner.
| | Sample_data_processing | We used the bioconductor package (affy package) to generate the RMA data.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Igor,,Slukvin
| | Sample_contact_email | islukvin@wisc.edu
| | Sample_contact_phone | 608-263-0058
| | Sample_contact_fax | 608-265-8984
| | Sample_contact_department | Department of Pathology and Laboratory Medicine
| | Sample_contact_institute | University of Wisconsin
| | Sample_contact_address | 1220 Capitol Court
| | Sample_contact_city | Madison
| | Sample_contact_state | WI
| | Sample_contact_zip/postal_code | 53706
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM656nnn/GSM656437/suppl/GSM656437_BM.CEL.gz
| | Sample_series_id | GSE26672
| | Sample_data_row_count | 54675
| | |
|
GSM656438 | GPL570 |
|
CB6
|
iPSC line 6 generated from human cord blood MNC
|
cell type: transgene-free iPSC
|
|
| Sample_geo_accession | GSM656438
| | Sample_status | Public on Feb 04 2011
| | Sample_submission_date | Jan 18 2011
| | Sample_last_update_date | Feb 04 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | DNA was removed by RNase-free DNase treatment using standard procedure.
| | Sample_growth_protocol_ch1 | iPS cells were tranferred from MEF to feeder-free culture system to avoid murine RNA contamination
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Tri reagent (Ambioin) extraction of total RNA was performed according to the manufacturer's instructions. The integrity of RNA was checked by Agilent 2100 Bioanalyzer
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 3 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using an AFX GC3000 G7 scanner.
| | Sample_data_processing | We used the bioconductor package (affy package) to generate the RMA data.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Igor,,Slukvin
| | Sample_contact_email | islukvin@wisc.edu
| | Sample_contact_phone | 608-263-0058
| | Sample_contact_fax | 608-265-8984
| | Sample_contact_department | Department of Pathology and Laboratory Medicine
| | Sample_contact_institute | University of Wisconsin
| | Sample_contact_address | 1220 Capitol Court
| | Sample_contact_city | Madison
| | Sample_contact_state | WI
| | Sample_contact_zip/postal_code | 53706
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM656nnn/GSM656438/suppl/GSM656438_CB6.CEL.gz
| | Sample_series_id | GSE26672
| | Sample_data_row_count | 54675
| | |
|
GSM656439 | GPL570 |
|
CBT4
|
iPSC line T4 generated from human cord blood MNC in the presence of thiazovivin
|
cell type: transgene-free iPSC
|
|
| Sample_geo_accession | GSM656439
| | Sample_status | Public on Feb 04 2011
| | Sample_submission_date | Jan 18 2011
| | Sample_last_update_date | Feb 04 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | DNA was removed by RNase-free DNase treatment using standard procedure.
| | Sample_growth_protocol_ch1 | iPS cells were tranferred from MEF to feeder-free culture system to avoid murine RNA contamination
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Tri reagent (Ambioin) extraction of total RNA was performed according to the manufacturer's instructions. The integrity of RNA was checked by Agilent 2100 Bioanalyzer
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 3 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using an AFX GC3000 G7 scanner.
| | Sample_data_processing | We used the bioconductor package (affy package) to generate the RMA data.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Igor,,Slukvin
| | Sample_contact_email | islukvin@wisc.edu
| | Sample_contact_phone | 608-263-0058
| | Sample_contact_fax | 608-265-8984
| | Sample_contact_department | Department of Pathology and Laboratory Medicine
| | Sample_contact_institute | University of Wisconsin
| | Sample_contact_address | 1220 Capitol Court
| | Sample_contact_city | Madison
| | Sample_contact_state | WI
| | Sample_contact_zip/postal_code | 53706
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM656nnn/GSM656439/suppl/GSM656439_CBT4.CEL.gz
| | Sample_series_id | GSE26672
| | Sample_data_row_count | 54675
| | |
|
GSM656440 | GPL570 |
|
CML15
|
iPSC line 15 generated from human CML bone marrow MNC
|
cell type: transgene-free iPSC
|
|
| Sample_geo_accession | GSM656440
| | Sample_status | Public on Feb 04 2011
| | Sample_submission_date | Jan 18 2011
| | Sample_last_update_date | Feb 04 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | DNA was removed by RNase-free DNase treatment using standard procedure.
| | Sample_growth_protocol_ch1 | iPS cells were tranferred from MEF to feeder-free culture system to avoid murine RNA contamination
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Tri reagent (Ambioin) extraction of total RNA was performed according to the manufacturer's instructions. The integrity of RNA was checked by Agilent 2100 Bioanalyzer
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 3 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using an AFX GC3000 G7 scanner.
| | Sample_data_processing | We used the bioconductor package (affy package) to generate the RMA data.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Igor,,Slukvin
| | Sample_contact_email | islukvin@wisc.edu
| | Sample_contact_phone | 608-263-0058
| | Sample_contact_fax | 608-265-8984
| | Sample_contact_department | Department of Pathology and Laboratory Medicine
| | Sample_contact_institute | University of Wisconsin
| | Sample_contact_address | 1220 Capitol Court
| | Sample_contact_city | Madison
| | Sample_contact_state | WI
| | Sample_contact_zip/postal_code | 53706
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM656nnn/GSM656440/suppl/GSM656440_CML15.CEL.gz
| | Sample_series_id | GSE26672
| | Sample_data_row_count | 54675
| | |
|
GSM656441 | GPL570 |
|
H1ESC
|
human embryonic stem cell line H1
|
cell type: hESC
|
|
| Sample_geo_accession | GSM656441
| | Sample_status | Public on Feb 04 2011
| | Sample_submission_date | Jan 18 2011
| | Sample_last_update_date | Feb 04 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | DNA was removed by RNase-free DNase treatment using standard procedure.
| | Sample_growth_protocol_ch1 | iPS cells were tranferred from MEF to feeder-free culture system to avoid murine RNA contamination
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Tri reagent (Ambioin) extraction of total RNA was performed according to the manufacturer's instructions. The integrity of RNA was checked by Agilent 2100 Bioanalyzer
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 3 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using an AFX GC3000 G7 scanner.
| | Sample_data_processing | We used the bioconductor package (affy package) to generate the RMA data.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Igor,,Slukvin
| | Sample_contact_email | islukvin@wisc.edu
| | Sample_contact_phone | 608-263-0058
| | Sample_contact_fax | 608-265-8984
| | Sample_contact_department | Department of Pathology and Laboratory Medicine
| | Sample_contact_institute | University of Wisconsin
| | Sample_contact_address | 1220 Capitol Court
| | Sample_contact_city | Madison
| | Sample_contact_state | WI
| | Sample_contact_zip/postal_code | 53706
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM656nnn/GSM656441/suppl/GSM656441_H1ESC_102208.cel.gz
| | Sample_series_id | GSE26672
| | Sample_data_row_count | 54675
| | |
|
GSM656442 | GPL570 |
|
DF19_9
|
iPSC line DF19-9 generated from human fibroblast
|
cell type: transgene-free iPSC
|
|
| Sample_geo_accession | GSM656442
| | Sample_status | Public on Feb 04 2011
| | Sample_submission_date | Jan 18 2011
| | Sample_last_update_date | Feb 04 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | DNA was removed by RNase-free DNase treatment using standard procedure.
| | Sample_growth_protocol_ch1 | iPS cells were tranferred from MEF to feeder-free culture system to avoid murine RNA contamination
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Tri reagent (Ambioin) extraction of total RNA was performed according to the manufacturer's instructions. The integrity of RNA was checked by Agilent 2100 Bioanalyzer
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 3 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using an AFX GC3000 G7 scanner.
| | Sample_data_processing | We used the bioconductor package (affy package) to generate the RMA data.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Igor,,Slukvin
| | Sample_contact_email | islukvin@wisc.edu
| | Sample_contact_phone | 608-263-0058
| | Sample_contact_fax | 608-265-8984
| | Sample_contact_department | Department of Pathology and Laboratory Medicine
| | Sample_contact_institute | University of Wisconsin
| | Sample_contact_address | 1220 Capitol Court
| | Sample_contact_city | Madison
| | Sample_contact_state | WI
| | Sample_contact_zip/postal_code | 53706
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM656nnn/GSM656442/suppl/GSM656442.CEL.gz
| | Sample_relation | Reanalysis of: GSM378833
| | Sample_series_id | GSE26672
| | Sample_data_row_count | 54675
| | |
|
GSM656443 | GPL570 |
|
DF19_9_11T
|
iPSC line DF19-9-11T generated from human fibroblast
|
cell type: transgene-free iPSC
|
|
| Sample_geo_accession | GSM656443
| | Sample_status | Public on Feb 04 2011
| | Sample_submission_date | Jan 18 2011
| | Sample_last_update_date | Feb 04 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | DNA was removed by RNase-free DNase treatment using standard procedure.
| | Sample_growth_protocol_ch1 | iPS cells were tranferred from MEF to feeder-free culture system to avoid murine RNA contamination
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Tri reagent (Ambioin) extraction of total RNA was performed according to the manufacturer's instructions. The integrity of RNA was checked by Agilent 2100 Bioanalyzer
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 3 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using an AFX GC3000 G7 scanner.
| | Sample_data_processing | We used the bioconductor package (affy package) to generate the RMA data.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Igor,,Slukvin
| | Sample_contact_email | islukvin@wisc.edu
| | Sample_contact_phone | 608-263-0058
| | Sample_contact_fax | 608-265-8984
| | Sample_contact_department | Department of Pathology and Laboratory Medicine
| | Sample_contact_institute | University of Wisconsin
| | Sample_contact_address | 1220 Capitol Court
| | Sample_contact_city | Madison
| | Sample_contact_state | WI
| | Sample_contact_zip/postal_code | 53706
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM656nnn/GSM656443/suppl/GSM656443.CEL.gz
| | Sample_relation | Reanalysis of: GSM378834
| | Sample_series_id | GSE26672
| | Sample_data_row_count | 54675
| | |
|
GSM656444 | GPL570 |
|
DF19_9_7T
|
iPSC line DF19-9-7T generated from human fibroblast
|
cell type: transgene-free iPSC
|
|
| Sample_geo_accession | GSM656444
| | Sample_status | Public on Feb 04 2011
| | Sample_submission_date | Jan 18 2011
| | Sample_last_update_date | Feb 04 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | DNA was removed by RNase-free DNase treatment using standard procedure.
| | Sample_growth_protocol_ch1 | iPS cells were tranferred from MEF to feeder-free culture system to avoid murine RNA contamination
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Tri reagent (Ambioin) extraction of total RNA was performed according to the manufacturer's instructions. The integrity of RNA was checked by Agilent 2100 Bioanalyzer
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 3 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using an AFX GC3000 G7 scanner.
| | Sample_data_processing | We used the bioconductor package (affy package) to generate the RMA data.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Igor,,Slukvin
| | Sample_contact_email | islukvin@wisc.edu
| | Sample_contact_phone | 608-263-0058
| | Sample_contact_fax | 608-265-8984
| | Sample_contact_department | Department of Pathology and Laboratory Medicine
| | Sample_contact_institute | University of Wisconsin
| | Sample_contact_address | 1220 Capitol Court
| | Sample_contact_city | Madison
| | Sample_contact_state | WI
| | Sample_contact_zip/postal_code | 53706
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM656nnn/GSM656444/suppl/GSM656444.CEL.gz
| | Sample_relation | Reanalysis of: GSM378835
| | Sample_series_id | GSE26672
| | Sample_data_row_count | 54675
| | |
|
GSM656445 | GPL570 |
|
DF6_9
|
iPSC line DF6-9 generated from human fibroblast
|
cell type: transgene-free iPSC
|
|
| Sample_geo_accession | GSM656445
| | Sample_status | Public on Feb 04 2011
| | Sample_submission_date | Jan 18 2011
| | Sample_last_update_date | Feb 04 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | DNA was removed by RNase-free DNase treatment using standard procedure.
| | Sample_growth_protocol_ch1 | iPS cells were tranferred from MEF to feeder-free culture system to avoid murine RNA contamination
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Tri reagent (Ambioin) extraction of total RNA was performed according to the manufacturer's instructions. The integrity of RNA was checked by Agilent 2100 Bioanalyzer
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 3 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using an AFX GC3000 G7 scanner.
| | Sample_data_processing | We used the bioconductor package (affy package) to generate the RMA data.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Igor,,Slukvin
| | Sample_contact_email | islukvin@wisc.edu
| | Sample_contact_phone | 608-263-0058
| | Sample_contact_fax | 608-265-8984
| | Sample_contact_department | Department of Pathology and Laboratory Medicine
| | Sample_contact_institute | University of Wisconsin
| | Sample_contact_address | 1220 Capitol Court
| | Sample_contact_city | Madison
| | Sample_contact_state | WI
| | Sample_contact_zip/postal_code | 53706
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM656nnn/GSM656445/suppl/GSM656445.CEL.gz
| | Sample_relation | Reanalysis of: GSM378838
| | Sample_series_id | GSE26672
| | Sample_data_row_count | 54675
| | |
|
GSM656446 | GPL570 |
|
DF6_9_9T
|
iPSC line DF6-9-9T generatedf from human fibroblast
|
cell type: transgene-free iPSC
|
|
| Sample_geo_accession | GSM656446
| | Sample_status | Public on Feb 04 2011
| | Sample_submission_date | Jan 18 2011
| | Sample_last_update_date | Feb 04 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | DNA was removed by RNase-free DNase treatment using standard procedure.
| | Sample_growth_protocol_ch1 | iPS cells were tranferred from MEF to feeder-free culture system to avoid murine RNA contamination
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Tri reagent (Ambioin) extraction of total RNA was performed according to the manufacturer's instructions. The integrity of RNA was checked by Agilent 2100 Bioanalyzer
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 3 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using an AFX GC3000 G7 scanner.
| | Sample_data_processing | We used the bioconductor package (affy package) to generate the RMA data.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Igor,,Slukvin
| | Sample_contact_email | islukvin@wisc.edu
| | Sample_contact_phone | 608-263-0058
| | Sample_contact_fax | 608-265-8984
| | Sample_contact_department | Department of Pathology and Laboratory Medicine
| | Sample_contact_institute | University of Wisconsin
| | Sample_contact_address | 1220 Capitol Court
| | Sample_contact_city | Madison
| | Sample_contact_state | WI
| | Sample_contact_zip/postal_code | 53706
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM656nnn/GSM656446/suppl/GSM656446.CEL.gz
| | Sample_relation | Reanalysis of: GSM378837
| | Sample_series_id | GSE26672
| | Sample_data_row_count | 54675
| | |
|
GSM656447 | GPL570 |
|
Foreskin
|
human foreskin fibroblast
|
cell type: somatic cells Fibroblast
|
|
| Sample_geo_accession | GSM656447
| | Sample_status | Public on Feb 04 2011
| | Sample_submission_date | Jan 18 2011
| | Sample_last_update_date | Feb 04 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | DNA was removed by RNase-free DNase treatment using standard procedure.
| | Sample_growth_protocol_ch1 | iPS cells were tranferred from MEF to feeder-free culture system to avoid murine RNA contamination
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Tri reagent (Ambioin) extraction of total RNA was performed according to the manufacturer's instructions. The integrity of RNA was checked by Agilent 2100 Bioanalyzer
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 3 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using an AFX GC3000 G7 scanner.
| | Sample_data_processing | We used the bioconductor package (affy package) to generate the RMA data.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Igor,,Slukvin
| | Sample_contact_email | islukvin@wisc.edu
| | Sample_contact_phone | 608-263-0058
| | Sample_contact_fax | 608-265-8984
| | Sample_contact_department | Department of Pathology and Laboratory Medicine
| | Sample_contact_institute | University of Wisconsin
| | Sample_contact_address | 1220 Capitol Court
| | Sample_contact_city | Madison
| | Sample_contact_state | WI
| | Sample_contact_zip/postal_code | 53706
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM656nnn/GSM656447/suppl/GSM656447.CEL.gz
| | Sample_relation | Reanalysis of: GSM378821
| | Sample_series_id | GSE26672
| | Sample_data_row_count | 54675
| | |
|
GSM656448 | GPL570 |
|
H13B_ESC
|
human embryonic stem cell line H13B
|
cell type: hESC
|
|
| Sample_geo_accession | GSM656448
| | Sample_status | Public on Feb 04 2011
| | Sample_submission_date | Jan 18 2011
| | Sample_last_update_date | Feb 04 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | DNA was removed by RNase-free DNase treatment using standard procedure.
| | Sample_growth_protocol_ch1 | iPS cells were tranferred from MEF to feeder-free culture system to avoid murine RNA contamination
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Tri reagent (Ambioin) extraction of total RNA was performed according to the manufacturer's instructions. The integrity of RNA was checked by Agilent 2100 Bioanalyzer
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 3 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using an AFX GC3000 G7 scanner.
| | Sample_data_processing | We used the bioconductor package (affy package) to generate the RMA data.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Igor,,Slukvin
| | Sample_contact_email | islukvin@wisc.edu
| | Sample_contact_phone | 608-263-0058
| | Sample_contact_fax | 608-265-8984
| | Sample_contact_department | Department of Pathology and Laboratory Medicine
| | Sample_contact_institute | University of Wisconsin
| | Sample_contact_address | 1220 Capitol Court
| | Sample_contact_city | Madison
| | Sample_contact_state | WI
| | Sample_contact_zip/postal_code | 53706
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM656nnn/GSM656448/suppl/GSM656448.CEL.gz
| | Sample_relation | Reanalysis of: GSM378819
| | Sample_series_id | GSE26672
| | Sample_data_row_count | 54675
| | |
|
GSM656449 | GPL570 |
|
H14A_ESC
|
human embryonic stem cell line H13A
|
cell type: hESC
|
|
| Sample_geo_accession | GSM656449
| | Sample_status | Public on Feb 04 2011
| | Sample_submission_date | Jan 18 2011
| | Sample_last_update_date | Feb 04 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | DNA was removed by RNase-free DNase treatment using standard procedure.
| | Sample_growth_protocol_ch1 | iPS cells were tranferred from MEF to feeder-free culture system to avoid murine RNA contamination
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Tri reagent (Ambioin) extraction of total RNA was performed according to the manufacturer's instructions. The integrity of RNA was checked by Agilent 2100 Bioanalyzer
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 3 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using an AFX GC3000 G7 scanner.
| | Sample_data_processing | We used the bioconductor package (affy package) to generate the RMA data.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Igor,,Slukvin
| | Sample_contact_email | islukvin@wisc.edu
| | Sample_contact_phone | 608-263-0058
| | Sample_contact_fax | 608-265-8984
| | Sample_contact_department | Department of Pathology and Laboratory Medicine
| | Sample_contact_institute | University of Wisconsin
| | Sample_contact_address | 1220 Capitol Court
| | Sample_contact_city | Madison
| | Sample_contact_state | WI
| | Sample_contact_zip/postal_code | 53706
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM656nnn/GSM656449/suppl/GSM656449.CEL.gz
| | Sample_relation | Reanalysis of: GSM378820
| | Sample_series_id | GSE26672
| | Sample_data_row_count | 54675
| | |
|
GSM656450 | GPL570 |
|
H7_ESC
|
human embryonic stem cell line H7
|
cell type: hESC
|
|
| Sample_geo_accession | GSM656450
| | Sample_status | Public on Feb 04 2011
| | Sample_submission_date | Jan 18 2011
| | Sample_last_update_date | Feb 04 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | DNA was removed by RNase-free DNase treatment using standard procedure.
| | Sample_growth_protocol_ch1 | iPS cells were tranferred from MEF to feeder-free culture system to avoid murine RNA contamination
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Tri reagent (Ambioin) extraction of total RNA was performed according to the manufacturer's instructions. The integrity of RNA was checked by Agilent 2100 Bioanalyzer
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 3 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using an AFX GC3000 G7 scanner.
| | Sample_data_processing | We used the bioconductor package (affy package) to generate the RMA data.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Igor,,Slukvin
| | Sample_contact_email | islukvin@wisc.edu
| | Sample_contact_phone | 608-263-0058
| | Sample_contact_fax | 608-265-8984
| | Sample_contact_department | Department of Pathology and Laboratory Medicine
| | Sample_contact_institute | University of Wisconsin
| | Sample_contact_address | 1220 Capitol Court
| | Sample_contact_city | Madison
| | Sample_contact_state | WI
| | Sample_contact_zip/postal_code | 53706
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM656nnn/GSM656450/suppl/GSM656450.CEL.gz
| | Sample_relation | Reanalysis of: GSM378817
| | Sample_series_id | GSE26672
| | Sample_data_row_count | 54675
| | |
|
GSM656451 | GPL570 |
|
H9_ESC
|
human embryonic stem cell line H9
|
cell type: hESC
|
|
| Sample_geo_accession | GSM656451
| | Sample_status | Public on Feb 04 2011
| | Sample_submission_date | Jan 18 2011
| | Sample_last_update_date | Feb 04 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | DNA was removed by RNase-free DNase treatment using standard procedure.
| | Sample_growth_protocol_ch1 | iPS cells were tranferred from MEF to feeder-free culture system to avoid murine RNA contamination
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Tri reagent (Ambioin) extraction of total RNA was performed according to the manufacturer's instructions. The integrity of RNA was checked by Agilent 2100 Bioanalyzer
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 3 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using an AFX GC3000 G7 scanner.
| | Sample_data_processing | We used the bioconductor package (affy package) to generate the RMA data.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Igor,,Slukvin
| | Sample_contact_email | islukvin@wisc.edu
| | Sample_contact_phone | 608-263-0058
| | Sample_contact_fax | 608-265-8984
| | Sample_contact_department | Department of Pathology and Laboratory Medicine
| | Sample_contact_institute | University of Wisconsin
| | Sample_contact_address | 1220 Capitol Court
| | Sample_contact_city | Madison
| | Sample_contact_state | WI
| | Sample_contact_zip/postal_code | 53706
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM656nnn/GSM656451/suppl/GSM656451.CEL.gz
| | Sample_relation | Reanalysis of: GSM378818
| | Sample_series_id | GSE26672
| | Sample_data_row_count | 54675
| | |
|
| |
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