Search results for the GEO ID: GSE26673  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM656452 | GPL570 |
|
Biomaterial_BL_001_SI
|
Endemic Burkitt lymphoma
|
tissue: Lymph-node biopsy
genotype: African patient
age: Children
|
Gene expression data from patient's sample
|
| Sample_geo_accession | GSM656452
| | Sample_status | Public on Jan 20 2011
| | Sample_submission_date | Jan 18 2011
| | Sample_last_update_date | Jan 20 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Samples were taken at diagnosis from untreated patients
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2-5 micrograms total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner G3000.
| | Sample_data_processing | The data were analyzed with Affymetrix GCOS. Normalization: RMA. Baseline Transformation: Median of all samples.
| | Sample_platform_id | GPL570
| | Sample_contact_name | pier paolo,,piccaluga
| | Sample_contact_email | pierpaolo.piccaluga@unibo.it
| | Sample_contact_phone | +390516364043
| | Sample_contact_fax | +390516364037
| | Sample_contact_laboratory | Molecular Pathology
| | Sample_contact_department | Hematology and Oncological Sciences "L. and A. Seràgnoli"
| | Sample_contact_institute | University of Bologna
| | Sample_contact_address | via massraenti 9
| | Sample_contact_city | Bologna
| | Sample_contact_zip/postal_code | 40138
| | Sample_contact_country | Italy
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM656nnn/GSM656452/suppl/GSM656452.CEL.gz
| | Sample_series_id | GSE26673
| | Sample_data_row_count | 54675
| | |
|
GSM656453 | GPL570 |
|
Biomaterial_BL_002_SI
|
Endemic Burkitt lymphoma
|
tissue: Lymph-node biopsy
genotype: African patient
age: Children
|
Gene expression data from patient's sample
|
| Sample_geo_accession | GSM656453
| | Sample_status | Public on Jan 20 2011
| | Sample_submission_date | Jan 18 2011
| | Sample_last_update_date | Jan 20 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Samples were taken at diagnosis from untreated patients
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2-5 micrograms total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner G3000.
| | Sample_data_processing | The data were analyzed with Affymetrix GCOS. Normalization: RMA. Baseline Transformation: Median of all samples.
| | Sample_platform_id | GPL570
| | Sample_contact_name | pier paolo,,piccaluga
| | Sample_contact_email | pierpaolo.piccaluga@unibo.it
| | Sample_contact_phone | +390516364043
| | Sample_contact_fax | +390516364037
| | Sample_contact_laboratory | Molecular Pathology
| | Sample_contact_department | Hematology and Oncological Sciences "L. and A. Seràgnoli"
| | Sample_contact_institute | University of Bologna
| | Sample_contact_address | via massraenti 9
| | Sample_contact_city | Bologna
| | Sample_contact_zip/postal_code | 40138
| | Sample_contact_country | Italy
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM656nnn/GSM656453/suppl/GSM656453.CEL.gz
| | Sample_series_id | GSE26673
| | Sample_data_row_count | 54675
| | |
|
GSM656454 | GPL570 |
|
Biomaterial_BL_003_SI
|
Endemic Burkitt lymphoma
|
tissue: Lymph-node biopsy
genotype: African patient
age: Children
|
Gene expression data from patient's sample
|
| Sample_geo_accession | GSM656454
| | Sample_status | Public on Jan 20 2011
| | Sample_submission_date | Jan 18 2011
| | Sample_last_update_date | Jan 20 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Samples were taken at diagnosis from untreated patients
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2-5 micrograms total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner G3000.
| | Sample_data_processing | The data were analyzed with Affymetrix GCOS. Normalization: RMA. Baseline Transformation: Median of all samples.
| | Sample_platform_id | GPL570
| | Sample_contact_name | pier paolo,,piccaluga
| | Sample_contact_email | pierpaolo.piccaluga@unibo.it
| | Sample_contact_phone | +390516364043
| | Sample_contact_fax | +390516364037
| | Sample_contact_laboratory | Molecular Pathology
| | Sample_contact_department | Hematology and Oncological Sciences "L. and A. Seràgnoli"
| | Sample_contact_institute | University of Bologna
| | Sample_contact_address | via massraenti 9
| | Sample_contact_city | Bologna
| | Sample_contact_zip/postal_code | 40138
| | Sample_contact_country | Italy
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM656nnn/GSM656454/suppl/GSM656454.CEL.gz
| | Sample_series_id | GSE26673
| | Sample_data_row_count | 54675
| | |
|
GSM656455 | GPL570 |
|
Biomaterial_BL_004_SI
|
Endemic Burkitt lymphoma
|
tissue: Lymph-node biopsy
genotype: African patient
age: Children
|
Gene expression data from patient's sample
|
| Sample_geo_accession | GSM656455
| | Sample_status | Public on Jan 20 2011
| | Sample_submission_date | Jan 18 2011
| | Sample_last_update_date | Jan 20 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Samples were taken at diagnosis from untreated patients
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2-5 micrograms total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner G3000.
| | Sample_data_processing | The data were analyzed with Affymetrix GCOS. Normalization: RMA. Baseline Transformation: Median of all samples.
| | Sample_platform_id | GPL570
| | Sample_contact_name | pier paolo,,piccaluga
| | Sample_contact_email | pierpaolo.piccaluga@unibo.it
| | Sample_contact_phone | +390516364043
| | Sample_contact_fax | +390516364037
| | Sample_contact_laboratory | Molecular Pathology
| | Sample_contact_department | Hematology and Oncological Sciences "L. and A. Seràgnoli"
| | Sample_contact_institute | University of Bologna
| | Sample_contact_address | via massraenti 9
| | Sample_contact_city | Bologna
| | Sample_contact_zip/postal_code | 40138
| | Sample_contact_country | Italy
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM656nnn/GSM656455/suppl/GSM656455.CEL.gz
| | Sample_series_id | GSE26673
| | Sample_data_row_count | 54675
| | |
|
GSM656456 | GPL570 |
|
Biomaterial_BL_005_SI
|
Endemic Burkitt lymphoma
|
tissue: Lymph-node biopsy
genotype: African patient
age: Children
|
Gene expression data from patient's sample
|
| Sample_geo_accession | GSM656456
| | Sample_status | Public on Jan 20 2011
| | Sample_submission_date | Jan 18 2011
| | Sample_last_update_date | Jan 20 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Samples were taken at diagnosis from untreated patients
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2-5 micrograms total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner G3000.
| | Sample_data_processing | The data were analyzed with Affymetrix GCOS. Normalization: RMA. Baseline Transformation: Median of all samples.
| | Sample_platform_id | GPL570
| | Sample_contact_name | pier paolo,,piccaluga
| | Sample_contact_email | pierpaolo.piccaluga@unibo.it
| | Sample_contact_phone | +390516364043
| | Sample_contact_fax | +390516364037
| | Sample_contact_laboratory | Molecular Pathology
| | Sample_contact_department | Hematology and Oncological Sciences "L. and A. Seràgnoli"
| | Sample_contact_institute | University of Bologna
| | Sample_contact_address | via massraenti 9
| | Sample_contact_city | Bologna
| | Sample_contact_zip/postal_code | 40138
| | Sample_contact_country | Italy
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM656nnn/GSM656456/suppl/GSM656456.CEL.gz
| | Sample_series_id | GSE26673
| | Sample_data_row_count | 54675
| | |
|
GSM656457 | GPL570 |
|
Biomaterial_BL_006_SI
|
Endemic Burkitt lymphoma
|
tissue: Lymph-node biopsy
genotype: African patient
age: Children
|
Gene expression data from patient's sample
|
| Sample_geo_accession | GSM656457
| | Sample_status | Public on Jan 20 2011
| | Sample_submission_date | Jan 18 2011
| | Sample_last_update_date | Jan 20 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Samples were taken at diagnosis from untreated patients
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2-5 micrograms total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner G3000.
| | Sample_data_processing | The data were analyzed with Affymetrix GCOS. Normalization: RMA. Baseline Transformation: Median of all samples.
| | Sample_platform_id | GPL570
| | Sample_contact_name | pier paolo,,piccaluga
| | Sample_contact_email | pierpaolo.piccaluga@unibo.it
| | Sample_contact_phone | +390516364043
| | Sample_contact_fax | +390516364037
| | Sample_contact_laboratory | Molecular Pathology
| | Sample_contact_department | Hematology and Oncological Sciences "L. and A. Seràgnoli"
| | Sample_contact_institute | University of Bologna
| | Sample_contact_address | via massraenti 9
| | Sample_contact_city | Bologna
| | Sample_contact_zip/postal_code | 40138
| | Sample_contact_country | Italy
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM656nnn/GSM656457/suppl/GSM656457.CEL.gz
| | Sample_series_id | GSE26673
| | Sample_data_row_count | 54675
| | |
|
GSM656458 | GPL570 |
|
Biomaterial_BL_007_SI
|
Endemic Burkitt lymphoma
|
tissue: Lymph-node biopsy
genotype: African patient
age: Children
|
Gene expression data from patient's sample
|
| Sample_geo_accession | GSM656458
| | Sample_status | Public on Jan 20 2011
| | Sample_submission_date | Jan 18 2011
| | Sample_last_update_date | Jan 20 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Samples were taken at diagnosis from untreated patients
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2-5 micrograms total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner G3000.
| | Sample_data_processing | The data were analyzed with Affymetrix GCOS. Normalization: RMA. Baseline Transformation: Median of all samples.
| | Sample_platform_id | GPL570
| | Sample_contact_name | pier paolo,,piccaluga
| | Sample_contact_email | pierpaolo.piccaluga@unibo.it
| | Sample_contact_phone | +390516364043
| | Sample_contact_fax | +390516364037
| | Sample_contact_laboratory | Molecular Pathology
| | Sample_contact_department | Hematology and Oncological Sciences "L. and A. Seràgnoli"
| | Sample_contact_institute | University of Bologna
| | Sample_contact_address | via massraenti 9
| | Sample_contact_city | Bologna
| | Sample_contact_zip/postal_code | 40138
| | Sample_contact_country | Italy
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM656nnn/GSM656458/suppl/GSM656458.CEL.gz
| | Sample_series_id | GSE26673
| | Sample_data_row_count | 54675
| | |
|
GSM656459 | GPL570 |
|
Biomaterial_BL_008_SI
|
Endemic Burkitt lymphoma
|
tissue: Lymph-node biopsy
genotype: African patient
age: Children
|
Gene expression data from patient's sample
|
| Sample_geo_accession | GSM656459
| | Sample_status | Public on Jan 20 2011
| | Sample_submission_date | Jan 18 2011
| | Sample_last_update_date | Jan 20 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Samples were taken at diagnosis from untreated patients
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2-5 micrograms total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner G3000.
| | Sample_data_processing | The data were analyzed with Affymetrix GCOS. Normalization: RMA. Baseline Transformation: Median of all samples.
| | Sample_platform_id | GPL570
| | Sample_contact_name | pier paolo,,piccaluga
| | Sample_contact_email | pierpaolo.piccaluga@unibo.it
| | Sample_contact_phone | +390516364043
| | Sample_contact_fax | +390516364037
| | Sample_contact_laboratory | Molecular Pathology
| | Sample_contact_department | Hematology and Oncological Sciences "L. and A. Seràgnoli"
| | Sample_contact_institute | University of Bologna
| | Sample_contact_address | via massraenti 9
| | Sample_contact_city | Bologna
| | Sample_contact_zip/postal_code | 40138
| | Sample_contact_country | Italy
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM656nnn/GSM656459/suppl/GSM656459.CEL.gz
| | Sample_series_id | GSE26673
| | Sample_data_row_count | 54675
| | |
|
GSM656460 | GPL570 |
|
Biomaterial_BL_009_SI
|
Endemic Burkitt lymphoma
|
tissue: Lymph-node biopsy
genotype: African patient
age: Children
|
Gene expression data from patient's sample
|
| Sample_geo_accession | GSM656460
| | Sample_status | Public on Jan 20 2011
| | Sample_submission_date | Jan 18 2011
| | Sample_last_update_date | Jan 20 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Samples were taken at diagnosis from untreated patients
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2-5 micrograms total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner G3000.
| | Sample_data_processing | The data were analyzed with Affymetrix GCOS. Normalization: RMA. Baseline Transformation: Median of all samples.
| | Sample_platform_id | GPL570
| | Sample_contact_name | pier paolo,,piccaluga
| | Sample_contact_email | pierpaolo.piccaluga@unibo.it
| | Sample_contact_phone | +390516364043
| | Sample_contact_fax | +390516364037
| | Sample_contact_laboratory | Molecular Pathology
| | Sample_contact_department | Hematology and Oncological Sciences "L. and A. Seràgnoli"
| | Sample_contact_institute | University of Bologna
| | Sample_contact_address | via massraenti 9
| | Sample_contact_city | Bologna
| | Sample_contact_zip/postal_code | 40138
| | Sample_contact_country | Italy
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM656nnn/GSM656460/suppl/GSM656460.CEL.gz
| | Sample_series_id | GSE26673
| | Sample_data_row_count | 54675
| | |
|
GSM656461 | GPL570 |
|
Biomaterial_BL_010_SI
|
Endemic Burkitt lymphoma
|
tissue: Lymph-node biopsy
genotype: African patient
age: Children
|
Gene expression data from patient's sample
|
| Sample_geo_accession | GSM656461
| | Sample_status | Public on Jan 20 2011
| | Sample_submission_date | Jan 18 2011
| | Sample_last_update_date | Jan 20 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Samples were taken at diagnosis from untreated patients
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2-5 micrograms total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner G3000.
| | Sample_data_processing | The data were analyzed with Affymetrix GCOS. Normalization: RMA. Baseline Transformation: Median of all samples.
| | Sample_platform_id | GPL570
| | Sample_contact_name | pier paolo,,piccaluga
| | Sample_contact_email | pierpaolo.piccaluga@unibo.it
| | Sample_contact_phone | +390516364043
| | Sample_contact_fax | +390516364037
| | Sample_contact_laboratory | Molecular Pathology
| | Sample_contact_department | Hematology and Oncological Sciences "L. and A. Seràgnoli"
| | Sample_contact_institute | University of Bologna
| | Sample_contact_address | via massraenti 9
| | Sample_contact_city | Bologna
| | Sample_contact_zip/postal_code | 40138
| | Sample_contact_country | Italy
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM656nnn/GSM656461/suppl/GSM656461.CEL.gz
| | Sample_series_id | GSE26673
| | Sample_data_row_count | 54675
| | |
|
GSM656462 | GPL570 |
|
Biomaterial_BL_011_SI
|
Endemic Burkitt lymphoma
|
tissue: Lymph-node biopsy
genotype: African patient
age: Children
|
Gene expression data from patient's sample
|
| Sample_geo_accession | GSM656462
| | Sample_status | Public on Jan 20 2011
| | Sample_submission_date | Jan 18 2011
| | Sample_last_update_date | Jan 20 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Samples were taken at diagnosis from untreated patients
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2-5 micrograms total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner G3000.
| | Sample_data_processing | The data were analyzed with Affymetrix GCOS. Normalization: RMA. Baseline Transformation: Median of all samples.
| | Sample_platform_id | GPL570
| | Sample_contact_name | pier paolo,,piccaluga
| | Sample_contact_email | pierpaolo.piccaluga@unibo.it
| | Sample_contact_phone | +390516364043
| | Sample_contact_fax | +390516364037
| | Sample_contact_laboratory | Molecular Pathology
| | Sample_contact_department | Hematology and Oncological Sciences "L. and A. Seràgnoli"
| | Sample_contact_institute | University of Bologna
| | Sample_contact_address | via massraenti 9
| | Sample_contact_city | Bologna
| | Sample_contact_zip/postal_code | 40138
| | Sample_contact_country | Italy
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM656nnn/GSM656462/suppl/GSM656462.CEL.gz
| | Sample_series_id | GSE26673
| | Sample_data_row_count | 54675
| | |
|
GSM656463 | GPL570 |
|
Biomaterial_BL_012_SI
|
Endemic Burkitt lymphoma
|
tissue: Lymph-node biopsy
genotype: African patient
age: Children
|
Gene expression data from patient's sample
|
| Sample_geo_accession | GSM656463
| | Sample_status | Public on Jan 20 2011
| | Sample_submission_date | Jan 18 2011
| | Sample_last_update_date | Jan 20 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Samples were taken at diagnosis from untreated patients
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2-5 micrograms total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner G3000.
| | Sample_data_processing | The data were analyzed with Affymetrix GCOS. Normalization: RMA. Baseline Transformation: Median of all samples.
| | Sample_platform_id | GPL570
| | Sample_contact_name | pier paolo,,piccaluga
| | Sample_contact_email | pierpaolo.piccaluga@unibo.it
| | Sample_contact_phone | +390516364043
| | Sample_contact_fax | +390516364037
| | Sample_contact_laboratory | Molecular Pathology
| | Sample_contact_department | Hematology and Oncological Sciences "L. and A. Seràgnoli"
| | Sample_contact_institute | University of Bologna
| | Sample_contact_address | via massraenti 9
| | Sample_contact_city | Bologna
| | Sample_contact_zip/postal_code | 40138
| | Sample_contact_country | Italy
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM656nnn/GSM656463/suppl/GSM656463.CEL.gz
| | Sample_series_id | GSE26673
| | Sample_data_row_count | 54675
| | |
|
GSM656464 | GPL570 |
|
Biomaterial_BL_013_SI
|
Endemic Burkitt lymphoma
|
tissue: Lymph-node biopsy
genotype: African patient
age: Children
|
Gene expression data from patient's sample
|
| Sample_geo_accession | GSM656464
| | Sample_status | Public on Jan 20 2011
| | Sample_submission_date | Jan 18 2011
| | Sample_last_update_date | Jan 20 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Samples were taken at diagnosis from untreated patients
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2-5 micrograms total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner G3000.
| | Sample_data_processing | The data were analyzed with Affymetrix GCOS. Normalization: RMA. Baseline Transformation: Median of all samples.
| | Sample_platform_id | GPL570
| | Sample_contact_name | pier paolo,,piccaluga
| | Sample_contact_email | pierpaolo.piccaluga@unibo.it
| | Sample_contact_phone | +390516364043
| | Sample_contact_fax | +390516364037
| | Sample_contact_laboratory | Molecular Pathology
| | Sample_contact_department | Hematology and Oncological Sciences "L. and A. Seràgnoli"
| | Sample_contact_institute | University of Bologna
| | Sample_contact_address | via massraenti 9
| | Sample_contact_city | Bologna
| | Sample_contact_zip/postal_code | 40138
| | Sample_contact_country | Italy
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM656nnn/GSM656464/suppl/GSM656464.CEL.gz
| | Sample_series_id | GSE26673
| | Sample_data_row_count | 54675
| | |
|
GSM656465 | GPL570 |
|
Biomaterial_HIV-BL_001_BO
|
Immunodeficiency associated Burkitt lymphoma
|
tissue: Lymph-node biopsy
genotype: European patient
age: Adult
|
Gene expression data from patient's sample
|
| Sample_geo_accession | GSM656465
| | Sample_status | Public on Jan 20 2011
| | Sample_submission_date | Jan 18 2011
| | Sample_last_update_date | Jan 20 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Samples were taken at diagnosis from untreated patients
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2-5 micrograms total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner G3000.
| | Sample_data_processing | The data were analyzed with Affymetrix GCOS. Normalization: RMA. Baseline Transformation: Median of all samples.
| | Sample_platform_id | GPL570
| | Sample_contact_name | pier paolo,,piccaluga
| | Sample_contact_email | pierpaolo.piccaluga@unibo.it
| | Sample_contact_phone | +390516364043
| | Sample_contact_fax | +390516364037
| | Sample_contact_laboratory | Molecular Pathology
| | Sample_contact_department | Hematology and Oncological Sciences "L. and A. Seràgnoli"
| | Sample_contact_institute | University of Bologna
| | Sample_contact_address | via massraenti 9
| | Sample_contact_city | Bologna
| | Sample_contact_zip/postal_code | 40138
| | Sample_contact_country | Italy
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM656nnn/GSM656465/suppl/GSM656465.CEL.gz
| | Sample_series_id | GSE26673
| | Sample_data_row_count | 54675
| | |
|
GSM656466 | GPL570 |
|
Biomaterial_HIV-BL_002_BO
|
Immunodeficiency associated Burkitt lymphoma
|
tissue: Lymph-node biopsy
genotype: European patient
age: Adult
|
Gene expression data from patient's sample
|
| Sample_geo_accession | GSM656466
| | Sample_status | Public on Jan 20 2011
| | Sample_submission_date | Jan 18 2011
| | Sample_last_update_date | Jan 20 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Samples were taken at diagnosis from untreated patients
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2-5 micrograms total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner G3000.
| | Sample_data_processing | The data were analyzed with Affymetrix GCOS. Normalization: RMA. Baseline Transformation: Median of all samples.
| | Sample_platform_id | GPL570
| | Sample_contact_name | pier paolo,,piccaluga
| | Sample_contact_email | pierpaolo.piccaluga@unibo.it
| | Sample_contact_phone | +390516364043
| | Sample_contact_fax | +390516364037
| | Sample_contact_laboratory | Molecular Pathology
| | Sample_contact_department | Hematology and Oncological Sciences "L. and A. Seràgnoli"
| | Sample_contact_institute | University of Bologna
| | Sample_contact_address | via massraenti 9
| | Sample_contact_city | Bologna
| | Sample_contact_zip/postal_code | 40138
| | Sample_contact_country | Italy
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM656nnn/GSM656466/suppl/GSM656466.CEL.gz
| | Sample_series_id | GSE26673
| | Sample_data_row_count | 54675
| | |
|
GSM656467 | GPL570 |
|
Biomaterial_BL_001_BO
|
Sporadic Burkitt lymphoma
|
tissue: Lymph-node biopsy
genotype: European patient
age: Adult
|
Gene expression data from patient's sample
|
| Sample_geo_accession | GSM656467
| | Sample_status | Public on Jan 20 2011
| | Sample_submission_date | Jan 18 2011
| | Sample_last_update_date | Jan 20 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Samples were taken at diagnosis from untreated patients
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2-5 micrograms total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner G3000.
| | Sample_data_processing | The data were analyzed with Affymetrix GCOS. Normalization: RMA. Baseline Transformation: Median of all samples.
| | Sample_platform_id | GPL570
| | Sample_contact_name | pier paolo,,piccaluga
| | Sample_contact_email | pierpaolo.piccaluga@unibo.it
| | Sample_contact_phone | +390516364043
| | Sample_contact_fax | +390516364037
| | Sample_contact_laboratory | Molecular Pathology
| | Sample_contact_department | Hematology and Oncological Sciences "L. and A. Seràgnoli"
| | Sample_contact_institute | University of Bologna
| | Sample_contact_address | via massraenti 9
| | Sample_contact_city | Bologna
| | Sample_contact_zip/postal_code | 40138
| | Sample_contact_country | Italy
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM656nnn/GSM656467/suppl/GSM656467.CEL.gz
| | Sample_series_id | GSE26673
| | Sample_data_row_count | 54675
| | |
|
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Make groups for comparisons |
(2 groups will be compared at a time) |
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| Select GSMs and click on "Add groups" |
Enter the group name here: |
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