Search results for the GEO ID: GSE26813  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM659543 | GPL201 |
|
P25AN13282 8oxoG, technical rep.-extract 1
|
8-oxoguanine treated MRC5 cells
|
cell type: human fibroblast
cell line: MRC5
treatment: 8-oxoguanine
time: 12 h
|
Gene expression data 12 hours after 8-oxoguanine exposure
|
| Sample_geo_accession | GSM659543
| | Sample_status | Public on Jan 27 2011
| | Sample_submission_date | Jan 24 2011
| | Sample_last_update_date | Jan 27 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated with 10µM 8-oxoguanine or mock treated with solvent for 6 hours.
| | Sample_growth_protocol_ch1 | MRC5, human diploid fibroblasts were maintained at 37 oC, in 5% CO2, in EMEM medium, supplemented with 10% FBS, glutamine, penicillin, and streptomycin.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated using Ambion's RNAqueous Kit according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | Following fragmentation, cRNA was hybridized to Affymetrix HG-U133A 2.0 Arrays in an Affymetrix Hybridization Oven-640 according to the manufacturer's instructions.
| | Sample_scan_protocol | GeneChips were scanned using an Affymetrix GeneChip Scanner 3000 7G.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL201
| | Sample_contact_name | Istvan,,Boldogh
| | Sample_contact_email | sboldogh@utmb.edu
| | Sample_contact_institute | University of Texas Medical Branch at Galveston
| | Sample_contact_address | 301 University Blvd.
| | Sample_contact_city | Galveston
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 77555
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM659nnn/GSM659543/suppl/GSM659543_P25AN13282.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM659nnn/GSM659543/suppl/GSM659543_P25AN13282.CHP.gz
| | Sample_series_id | GSE26813
| | Sample_data_row_count | 8793
| | |
|
GSM659544 | GPL201 |
|
P25BN13282 8oxoG, technical rep.-extract 2
|
8-oxoguanine treated MRC5 cells
|
cell type: human fibroblast
cell line: MRC5
treatment: 8-oxoguanine
time: 12 h
|
Gene expression data 12 hours after 8-oxoguanine exposure
|
| Sample_geo_accession | GSM659544
| | Sample_status | Public on Jan 27 2011
| | Sample_submission_date | Jan 24 2011
| | Sample_last_update_date | Jan 27 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated with 10µM 8-oxoguanine or mock treated with solvent for 6 hours.
| | Sample_growth_protocol_ch1 | MRC5, human diploid fibroblasts were maintained at 37 oC, in 5% CO2, in EMEM medium, supplemented with 10% FBS, glutamine, penicillin, and streptomycin.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated using Ambion's RNAqueous Kit according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | Following fragmentation, cRNA was hybridized to Affymetrix HG-U133A 2.0 Arrays in an Affymetrix Hybridization Oven-640 according to the manufacturer's instructions.
| | Sample_scan_protocol | GeneChips were scanned using an Affymetrix GeneChip Scanner 3000 7G.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL201
| | Sample_contact_name | Istvan,,Boldogh
| | Sample_contact_email | sboldogh@utmb.edu
| | Sample_contact_institute | University of Texas Medical Branch at Galveston
| | Sample_contact_address | 301 University Blvd.
| | Sample_contact_city | Galveston
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 77555
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM659nnn/GSM659544/suppl/GSM659544_P25BN13282.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM659nnn/GSM659544/suppl/GSM659544_P25BN13282.CHP.gz
| | Sample_series_id | GSE26813
| | Sample_data_row_count | 8793
| | |
|
GSM659545 | GPL201 |
|
P25CN13282 8oxoG, technical rep.-extract 3
|
8-oxoguanine treated MRC5 cells
|
cell type: human fibroblast
cell line: MRC5
treatment: 8-oxoguanine
time: 12 h
|
Gene expression data 12 hours after 8-oxoguanine exposure
|
| Sample_geo_accession | GSM659545
| | Sample_status | Public on Jan 27 2011
| | Sample_submission_date | Jan 24 2011
| | Sample_last_update_date | Jan 27 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated with 10µM 8-oxoguanine or mock treated with solvent for 6 hours.
| | Sample_growth_protocol_ch1 | MRC5, human diploid fibroblasts were maintained at 37 oC, in 5% CO2, in EMEM medium, supplemented with 10% FBS, glutamine, penicillin, and streptomycin.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated using Ambion's RNAqueous Kit according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | Following fragmentation, cRNA was hybridized to Affymetrix HG-U133A 2.0 Arrays in an Affymetrix Hybridization Oven-640 according to the manufacturer's instructions.
| | Sample_scan_protocol | GeneChips were scanned using an Affymetrix GeneChip Scanner 3000 7G.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL201
| | Sample_contact_name | Istvan,,Boldogh
| | Sample_contact_email | sboldogh@utmb.edu
| | Sample_contact_institute | University of Texas Medical Branch at Galveston
| | Sample_contact_address | 301 University Blvd.
| | Sample_contact_city | Galveston
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 77555
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM659nnn/GSM659545/suppl/GSM659545_P25CN13282.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM659nnn/GSM659545/suppl/GSM659545_P25CN13282.CHP.gz
| | Sample_series_id | GSE26813
| | Sample_data_row_count | 8793
| | |
|
GSM659546 | GPL201 |
|
P26AN13282 mock, technical rep.-extract 1
|
Mock treated MRC5 cells
|
cell type: human fibroblast
cell line: MRC5
treatment: mock
time: 12 h
|
Gene expression data 12 hours after 8-oxoguanine exposure
|
| Sample_geo_accession | GSM659546
| | Sample_status | Public on Jan 27 2011
| | Sample_submission_date | Jan 24 2011
| | Sample_last_update_date | Jan 27 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated with 10µM 8-oxoguanine or mock treated with solvent for 6 hours.
| | Sample_growth_protocol_ch1 | MRC5, human diploid fibroblasts were maintained at 37 oC, in 5% CO2, in EMEM medium, supplemented with 10% FBS, glutamine, penicillin, and streptomycin.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated using Ambion's RNAqueous Kit according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | Following fragmentation, cRNA was hybridized to Affymetrix HG-U133A 2.0 Arrays in an Affymetrix Hybridization Oven-640 according to the manufacturer's instructions.
| | Sample_scan_protocol | GeneChips were scanned using an Affymetrix GeneChip Scanner 3000 7G.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL201
| | Sample_contact_name | Istvan,,Boldogh
| | Sample_contact_email | sboldogh@utmb.edu
| | Sample_contact_institute | University of Texas Medical Branch at Galveston
| | Sample_contact_address | 301 University Blvd.
| | Sample_contact_city | Galveston
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 77555
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM659nnn/GSM659546/suppl/GSM659546_P26AN13282.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM659nnn/GSM659546/suppl/GSM659546_P26AN13282.CHP.gz
| | Sample_series_id | GSE26813
| | Sample_data_row_count | 8793
| | |
|
GSM659547 | GPL201 |
|
P26BN13282 mock, technical rep.-extract 2
|
Mock treated MRC5 cells
|
cell type: human fibroblast
cell line: MRC5
treatment: mock
time: 12 h
|
Gene expression data 12 hours after 8-oxoguanine exposure
|
| Sample_geo_accession | GSM659547
| | Sample_status | Public on Jan 27 2011
| | Sample_submission_date | Jan 24 2011
| | Sample_last_update_date | Jan 27 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated with 10µM 8-oxoguanine or mock treated with solvent for 6 hours.
| | Sample_growth_protocol_ch1 | MRC5, human diploid fibroblasts were maintained at 37 oC, in 5% CO2, in EMEM medium, supplemented with 10% FBS, glutamine, penicillin, and streptomycin.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated using Ambion's RNAqueous Kit according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | Following fragmentation, cRNA was hybridized to Affymetrix HG-U133A 2.0 Arrays in an Affymetrix Hybridization Oven-640 according to the manufacturer's instructions.
| | Sample_scan_protocol | GeneChips were scanned using an Affymetrix GeneChip Scanner 3000 7G.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL201
| | Sample_contact_name | Istvan,,Boldogh
| | Sample_contact_email | sboldogh@utmb.edu
| | Sample_contact_institute | University of Texas Medical Branch at Galveston
| | Sample_contact_address | 301 University Blvd.
| | Sample_contact_city | Galveston
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 77555
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM659nnn/GSM659547/suppl/GSM659547_P26BN13282.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM659nnn/GSM659547/suppl/GSM659547_P26BN13282.CHP.gz
| | Sample_series_id | GSE26813
| | Sample_data_row_count | 8793
| | |
|
GSM659548 | GPL201 |
|
P26CN13282 mock, technical rep.-extract 3
|
Mock treated MRC5 cells
|
cell type: human fibroblast
cell line: MRC5
treatment: mock
time: 12 h
|
Gene expression data 12 hours after 8-oxoguanine exposure
|
| Sample_geo_accession | GSM659548
| | Sample_status | Public on Jan 27 2011
| | Sample_submission_date | Jan 24 2011
| | Sample_last_update_date | Jan 27 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated with 10µM 8-oxoguanine or mock treated with solvent for 6 hours.
| | Sample_growth_protocol_ch1 | MRC5, human diploid fibroblasts were maintained at 37 oC, in 5% CO2, in EMEM medium, supplemented with 10% FBS, glutamine, penicillin, and streptomycin.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated using Ambion's RNAqueous Kit according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | Following fragmentation, cRNA was hybridized to Affymetrix HG-U133A 2.0 Arrays in an Affymetrix Hybridization Oven-640 according to the manufacturer's instructions.
| | Sample_scan_protocol | GeneChips were scanned using an Affymetrix GeneChip Scanner 3000 7G.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL201
| | Sample_contact_name | Istvan,,Boldogh
| | Sample_contact_email | sboldogh@utmb.edu
| | Sample_contact_institute | University of Texas Medical Branch at Galveston
| | Sample_contact_address | 301 University Blvd.
| | Sample_contact_city | Galveston
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 77555
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM659nnn/GSM659548/suppl/GSM659548_P26CN13282.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM659nnn/GSM659548/suppl/GSM659548_P26CN13282.CHP.gz
| | Sample_series_id | GSE26813
| | Sample_data_row_count | 8793
| | |
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