Search results for the GEO ID: GSE26865  |
(Click on the check boxes provided under "Select for analysis", to initiate grouping) |
(Once the selection is made, click on "Add groups" in "Make groups for comparison", to make a group. Scroll down) |
|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM661380 | GPL570 |
|
Affy_dic9-20_1_bm
|
Bone marrow
|
disease state: acute lymphoblastic leukemia
tissue: bone marrow
subtype: dic(9;20)
|
|
| Sample_geo_accession | GSM661380
| | Sample_status | Public on Dec 20 2011
| | Sample_submission_date | Jan 25 2011
| | Sample_last_update_date | May 17 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | AllPrep DNA/RNA Mini Kit (Qiagen)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared from two micrograms of total RNA
| | Sample_hyb_protocol | Biotinylated cRNAs were hybridized to the gene chips for 16 hours in a 45°C incubator, rotated at 60 rpm.
| | Sample_scan_protocol | The GeneChips were then washed and stained using the Fluidics Station 450 and scanned using the GeneChip® Scanner 3000 7G
| | Sample_data_processing | The data was normalized using the robust multi-array average (RMA) method (Irizarry et al. 2003)
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jessica,,Nordlund
| | Sample_contact_email | jessica.nordlund@medsci.uu.se
| | Sample_contact_phone | +46186114912
| | Sample_contact_laboratory | Molecular Medicine
| | Sample_contact_department | Medical Sciences
| | Sample_contact_institute | Uppsala University
| | Sample_contact_address | Academic Hospital, Entrance 70, 3rd floor
| | Sample_contact_city | Uppsala
| | Sample_contact_zip/postal_code | 75185
| | Sample_contact_country | Sweden
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM661nnn/GSM661380/suppl/GSM661380.CEL.gz
| | Sample_series_id | GSE26865
| | Sample_series_id | GSE26878
| | Sample_data_row_count | 54675
| | |
|
GSM661381 | GPL570 |
|
Affy_dic9-20_3_bm
|
Bone marrow
|
disease state: acute lymphoblastic leukemia
tissue: bone marrow
subtype: dic(9;20)
|
|
| Sample_geo_accession | GSM661381
| | Sample_status | Public on Dec 20 2011
| | Sample_submission_date | Jan 25 2011
| | Sample_last_update_date | May 17 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | AllPrep DNA/RNA Mini Kit (Qiagen)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared from two micrograms of total RNA
| | Sample_hyb_protocol | Biotinylated cRNAs were hybridized to the gene chips for 16 hours in a 45°C incubator, rotated at 60 rpm.
| | Sample_scan_protocol | The GeneChips were then washed and stained using the Fluidics Station 450 and scanned using the GeneChip® Scanner 3000 7G
| | Sample_data_processing | The data was normalized using the robust multi-array average (RMA) method (Irizarry et al. 2003)
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jessica,,Nordlund
| | Sample_contact_email | jessica.nordlund@medsci.uu.se
| | Sample_contact_phone | +46186114912
| | Sample_contact_laboratory | Molecular Medicine
| | Sample_contact_department | Medical Sciences
| | Sample_contact_institute | Uppsala University
| | Sample_contact_address | Academic Hospital, Entrance 70, 3rd floor
| | Sample_contact_city | Uppsala
| | Sample_contact_zip/postal_code | 75185
| | Sample_contact_country | Sweden
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM661nnn/GSM661381/suppl/GSM661381.CEL.gz
| | Sample_series_id | GSE26865
| | Sample_series_id | GSE26878
| | Sample_data_row_count | 54675
| | |
|
GSM661383 | GPL570 |
|
Affy_HeH_2a_bm
|
Bone marrow
|
disease state: acute lymphoblastic leukemia
tissue: bone marrow
subtype: High Hyperploidy (HeH)
|
|
| Sample_geo_accession | GSM661383
| | Sample_status | Public on Dec 20 2011
| | Sample_submission_date | Jan 25 2011
| | Sample_last_update_date | May 17 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | AllPrep DNA/RNA Mini Kit (Qiagen)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared from two micrograms of total RNA
| | Sample_hyb_protocol | Biotinylated cRNAs were hybridized to the gene chips for 16 hours in a 45°C incubator, rotated at 60 rpm.
| | Sample_scan_protocol | The GeneChips were then washed and stained using the Fluidics Station 450 and scanned using the GeneChip® Scanner 3000 7G
| | Sample_data_processing | The data was normalized using the robust multi-array average (RMA) method (Irizarry et al. 2003)
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jessica,,Nordlund
| | Sample_contact_email | jessica.nordlund@medsci.uu.se
| | Sample_contact_phone | +46186114912
| | Sample_contact_laboratory | Molecular Medicine
| | Sample_contact_department | Medical Sciences
| | Sample_contact_institute | Uppsala University
| | Sample_contact_address | Academic Hospital, Entrance 70, 3rd floor
| | Sample_contact_city | Uppsala
| | Sample_contact_zip/postal_code | 75185
| | Sample_contact_country | Sweden
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM661nnn/GSM661383/suppl/GSM661383.CEL.gz
| | Sample_series_id | GSE26865
| | Sample_series_id | GSE26878
| | Sample_data_row_count | 54675
| | |
|
GSM661384 | GPL570 |
|
Affy_HeH_4_bm
|
Bone marrow
|
disease state: acute lymphoblastic leukemia
tissue: bone marrow
subtype: High Hyperploidy (HeH)
|
|
| Sample_geo_accession | GSM661384
| | Sample_status | Public on Dec 20 2011
| | Sample_submission_date | Jan 25 2011
| | Sample_last_update_date | May 17 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | AllPrep DNA/RNA Mini Kit (Qiagen)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared from two micrograms of total RNA
| | Sample_hyb_protocol | Biotinylated cRNAs were hybridized to the gene chips for 16 hours in a 45°C incubator, rotated at 60 rpm.
| | Sample_scan_protocol | The GeneChips were then washed and stained using the Fluidics Station 450 and scanned using the GeneChip® Scanner 3000 7G
| | Sample_data_processing | The data was normalized using the robust multi-array average (RMA) method (Irizarry et al. 2003)
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jessica,,Nordlund
| | Sample_contact_email | jessica.nordlund@medsci.uu.se
| | Sample_contact_phone | +46186114912
| | Sample_contact_laboratory | Molecular Medicine
| | Sample_contact_department | Medical Sciences
| | Sample_contact_institute | Uppsala University
| | Sample_contact_address | Academic Hospital, Entrance 70, 3rd floor
| | Sample_contact_city | Uppsala
| | Sample_contact_zip/postal_code | 75185
| | Sample_contact_country | Sweden
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM661nnn/GSM661384/suppl/GSM661384.CEL.gz
| | Sample_series_id | GSE26865
| | Sample_series_id | GSE26878
| | Sample_data_row_count | 54675
| | |
|
GSM661386 | GPL570 |
|
Affy_HeH_7_bm
|
Bone marrow
|
disease state: acute lymphoblastic leukemia
tissue: bone marrow
subtype: High Hyperploidy (HeH)
|
|
| Sample_geo_accession | GSM661386
| | Sample_status | Public on Dec 20 2011
| | Sample_submission_date | Jan 25 2011
| | Sample_last_update_date | May 17 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | AllPrep DNA/RNA Mini Kit (Qiagen)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared from two micrograms of total RNA
| | Sample_hyb_protocol | Biotinylated cRNAs were hybridized to the gene chips for 16 hours in a 45°C incubator, rotated at 60 rpm.
| | Sample_scan_protocol | The GeneChips were then washed and stained using the Fluidics Station 450 and scanned using the GeneChip® Scanner 3000 7G
| | Sample_data_processing | The data was normalized using the robust multi-array average (RMA) method (Irizarry et al. 2003)
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jessica,,Nordlund
| | Sample_contact_email | jessica.nordlund@medsci.uu.se
| | Sample_contact_phone | +46186114912
| | Sample_contact_laboratory | Molecular Medicine
| | Sample_contact_department | Medical Sciences
| | Sample_contact_institute | Uppsala University
| | Sample_contact_address | Academic Hospital, Entrance 70, 3rd floor
| | Sample_contact_city | Uppsala
| | Sample_contact_zip/postal_code | 75185
| | Sample_contact_country | Sweden
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM661nnn/GSM661386/suppl/GSM661386.CEL.gz
| | Sample_series_id | GSE26865
| | Sample_series_id | GSE26878
| | Sample_data_row_count | 54675
| | |
|
GSM661388 | GPL570 |
|
Affy_t12-21_2_bm
|
Bone marrow
|
disease state: acute lymphoblastic leukemia
tissue: bone marrow
subtype: t(12;21) ETV6-RUNX1
|
|
| Sample_geo_accession | GSM661388
| | Sample_status | Public on Dec 20 2011
| | Sample_submission_date | Jan 25 2011
| | Sample_last_update_date | May 17 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | AllPrep DNA/RNA Mini Kit (Qiagen)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared from two micrograms of total RNA
| | Sample_hyb_protocol | Biotinylated cRNAs were hybridized to the gene chips for 16 hours in a 45°C incubator, rotated at 60 rpm.
| | Sample_scan_protocol | The GeneChips were then washed and stained using the Fluidics Station 450 and scanned using the GeneChip® Scanner 3000 7G
| | Sample_data_processing | The data was normalized using the robust multi-array average (RMA) method (Irizarry et al. 2003)
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jessica,,Nordlund
| | Sample_contact_email | jessica.nordlund@medsci.uu.se
| | Sample_contact_phone | +46186114912
| | Sample_contact_laboratory | Molecular Medicine
| | Sample_contact_department | Medical Sciences
| | Sample_contact_institute | Uppsala University
| | Sample_contact_address | Academic Hospital, Entrance 70, 3rd floor
| | Sample_contact_city | Uppsala
| | Sample_contact_zip/postal_code | 75185
| | Sample_contact_country | Sweden
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM661nnn/GSM661388/suppl/GSM661388.CEL.gz
| | Sample_series_id | GSE26865
| | Sample_series_id | GSE26878
| | Sample_data_row_count | 54675
| | |
|
GSM661390 | GPL570 |
|
Affy_t12-21_3_bm
|
Bone marrow
|
disease state: acute lymphoblastic leukemia
tissue: bone marrow
subtype: t(12;21) ETV6-RUNX1
|
|
| Sample_geo_accession | GSM661390
| | Sample_status | Public on Dec 20 2011
| | Sample_submission_date | Jan 25 2011
| | Sample_last_update_date | May 17 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | AllPrep DNA/RNA Mini Kit (Qiagen)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared from two micrograms of total RNA
| | Sample_hyb_protocol | Biotinylated cRNAs were hybridized to the gene chips for 16 hours in a 45°C incubator, rotated at 60 rpm.
| | Sample_scan_protocol | The GeneChips were then washed and stained using the Fluidics Station 450 and scanned using the GeneChip® Scanner 3000 7G
| | Sample_data_processing | The data was normalized using the robust multi-array average (RMA) method (Irizarry et al. 2003)
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jessica,,Nordlund
| | Sample_contact_email | jessica.nordlund@medsci.uu.se
| | Sample_contact_phone | +46186114912
| | Sample_contact_laboratory | Molecular Medicine
| | Sample_contact_department | Medical Sciences
| | Sample_contact_institute | Uppsala University
| | Sample_contact_address | Academic Hospital, Entrance 70, 3rd floor
| | Sample_contact_city | Uppsala
| | Sample_contact_zip/postal_code | 75185
| | Sample_contact_country | Sweden
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM661nnn/GSM661390/suppl/GSM661390.CEL.gz
| | Sample_series_id | GSE26865
| | Sample_series_id | GSE26878
| | Sample_data_row_count | 54675
| | |
|
GSM661392 | GPL570 |
|
Affy_t9-22_1_bm
|
Bone marrow
|
disease state: acute lymphoblastic leukemia
tissue: bone marrow
subtype: t(9;22) BCR-ABL1
|
|
| Sample_geo_accession | GSM661392
| | Sample_status | Public on Dec 20 2011
| | Sample_submission_date | Jan 25 2011
| | Sample_last_update_date | May 17 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | AllPrep DNA/RNA Mini Kit (Qiagen)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared from two micrograms of total RNA
| | Sample_hyb_protocol | Biotinylated cRNAs were hybridized to the gene chips for 16 hours in a 45°C incubator, rotated at 60 rpm.
| | Sample_scan_protocol | The GeneChips were then washed and stained using the Fluidics Station 450 and scanned using the GeneChip® Scanner 3000 7G
| | Sample_data_processing | The data was normalized using the robust multi-array average (RMA) method (Irizarry et al. 2003)
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jessica,,Nordlund
| | Sample_contact_email | jessica.nordlund@medsci.uu.se
| | Sample_contact_phone | +46186114912
| | Sample_contact_laboratory | Molecular Medicine
| | Sample_contact_department | Medical Sciences
| | Sample_contact_institute | Uppsala University
| | Sample_contact_address | Academic Hospital, Entrance 70, 3rd floor
| | Sample_contact_city | Uppsala
| | Sample_contact_zip/postal_code | 75185
| | Sample_contact_country | Sweden
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM661nnn/GSM661392/suppl/GSM661392.CEL.gz
| | Sample_series_id | GSE26865
| | Sample_series_id | GSE26878
| | Sample_data_row_count | 54675
| | |
|
GSM661395 | GPL570 |
|
Affy_t9-22_2_bm
|
Bone marrow
|
disease state: acute lymphoblastic leukemia
tissue: bone marrow
subtype: t(9;22) BCR-ABL1
|
|
| Sample_geo_accession | GSM661395
| | Sample_status | Public on Dec 20 2011
| | Sample_submission_date | Jan 25 2011
| | Sample_last_update_date | May 17 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | AllPrep DNA/RNA Mini Kit (Qiagen)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared from two micrograms of total RNA
| | Sample_hyb_protocol | Biotinylated cRNAs were hybridized to the gene chips for 16 hours in a 45°C incubator, rotated at 60 rpm.
| | Sample_scan_protocol | The GeneChips were then washed and stained using the Fluidics Station 450 and scanned using the GeneChip® Scanner 3000 7G
| | Sample_data_processing | The data was normalized using the robust multi-array average (RMA) method (Irizarry et al. 2003)
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jessica,,Nordlund
| | Sample_contact_email | jessica.nordlund@medsci.uu.se
| | Sample_contact_phone | +46186114912
| | Sample_contact_laboratory | Molecular Medicine
| | Sample_contact_department | Medical Sciences
| | Sample_contact_institute | Uppsala University
| | Sample_contact_address | Academic Hospital, Entrance 70, 3rd floor
| | Sample_contact_city | Uppsala
| | Sample_contact_zip/postal_code | 75185
| | Sample_contact_country | Sweden
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM661nnn/GSM661395/suppl/GSM661395.CEL.gz
| | Sample_series_id | GSE26865
| | Sample_series_id | GSE26878
| | Sample_data_row_count | 54675
| | |
|
GSM661397 | GPL570 |
|
Affy_TALL_2_bm
|
Bone marrow
|
disease state: acute lymphoblastic leukemia
tissue: bone marrow
subtype: T-cell lineage ALL (T-ALL)
|
|
| Sample_geo_accession | GSM661397
| | Sample_status | Public on Dec 20 2011
| | Sample_submission_date | Jan 25 2011
| | Sample_last_update_date | May 17 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | AllPrep DNA/RNA Mini Kit (Qiagen)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared from two micrograms of total RNA
| | Sample_hyb_protocol | Biotinylated cRNAs were hybridized to the gene chips for 16 hours in a 45°C incubator, rotated at 60 rpm.
| | Sample_scan_protocol | The GeneChips were then washed and stained using the Fluidics Station 450 and scanned using the GeneChip® Scanner 3000 7G
| | Sample_data_processing | The data was normalized using the robust multi-array average (RMA) method (Irizarry et al. 2003)
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jessica,,Nordlund
| | Sample_contact_email | jessica.nordlund@medsci.uu.se
| | Sample_contact_phone | +46186114912
| | Sample_contact_laboratory | Molecular Medicine
| | Sample_contact_department | Medical Sciences
| | Sample_contact_institute | Uppsala University
| | Sample_contact_address | Academic Hospital, Entrance 70, 3rd floor
| | Sample_contact_city | Uppsala
| | Sample_contact_zip/postal_code | 75185
| | Sample_contact_country | Sweden
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM661nnn/GSM661397/suppl/GSM661397.CEL.gz
| | Sample_series_id | GSE26865
| | Sample_series_id | GSE26878
| | Sample_data_row_count | 54675
| | |
|
GSM661399 | GPL570 |
|
Affy_TALL_3_bm
|
Bone marrow
|
disease state: acute lymphoblastic leukemia
tissue: bone marrow
subtype: T-cell lineage ALL (T-ALL)
|
|
| Sample_geo_accession | GSM661399
| | Sample_status | Public on Dec 20 2011
| | Sample_submission_date | Jan 25 2011
| | Sample_last_update_date | May 17 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | AllPrep DNA/RNA Mini Kit (Qiagen)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared from two micrograms of total RNA
| | Sample_hyb_protocol | Biotinylated cRNAs were hybridized to the gene chips for 16 hours in a 45°C incubator, rotated at 60 rpm.
| | Sample_scan_protocol | The GeneChips were then washed and stained using the Fluidics Station 450 and scanned using the GeneChip® Scanner 3000 7G
| | Sample_data_processing | The data was normalized using the robust multi-array average (RMA) method (Irizarry et al. 2003)
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jessica,,Nordlund
| | Sample_contact_email | jessica.nordlund@medsci.uu.se
| | Sample_contact_phone | +46186114912
| | Sample_contact_laboratory | Molecular Medicine
| | Sample_contact_department | Medical Sciences
| | Sample_contact_institute | Uppsala University
| | Sample_contact_address | Academic Hospital, Entrance 70, 3rd floor
| | Sample_contact_city | Uppsala
| | Sample_contact_zip/postal_code | 75185
| | Sample_contact_country | Sweden
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM661nnn/GSM661399/suppl/GSM661399.CEL.gz
| | Sample_series_id | GSE26865
| | Sample_series_id | GSE26878
| | Sample_data_row_count | 54675
| | |
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