Search results for the GEO ID: GSE26910  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM662756 | GPL570 |
|
prostate normal 1
|
Normal prostate stroma
|
tissue: prostate
normal/tumor: normal
|
Gene expression profiling of laser-microdissected stroma.
|
| Sample_geo_accession | GSM662756
| | Sample_status | Public on Mar 31 2011
| | Sample_submission_date | Jan 27 2011
| | Sample_last_update_date | Mar 31 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted immediately following microdissection using the PicoPure RNA isolation kit (Arcturus, Mountain View, CA, USA) according to the manufacturer’s instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotin-labeled nucleotides were incorporated to obtain biotin-labeled aRNA required for Affymetrix microarray hybridization.
| | Sample_hyb_protocol | Standard Affymetrix protocol.
| | Sample_scan_protocol | Standard Affymetrix protocol.
| | Sample_data_processing | RMA, using the “affy” package from Bioconductor.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Paolo,,Provero
| | Sample_contact_email | paolo.provero@gmail.com
| | Sample_contact_department | Genetics, Biology and Biochemistry
| | Sample_contact_institute | University of Turin
| | Sample_contact_address | Via Nizza 52
| | Sample_contact_city | Torino
| | Sample_contact_zip/postal_code | I-10100
| | Sample_contact_country | Italy
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM662nnn/GSM662756/suppl/GSM662756.CEL.gz
| | Sample_series_id | GSE26910
| | Sample_data_row_count | 54675
| | |
|
GSM662757 | GPL570 |
|
prostate tumor 1
|
Stroma associated to prostate invasive tumor
|
tissue: prostate
normal/tumor: tumor
|
Gene expression profiling of laser-microdissected stroma.
|
| Sample_geo_accession | GSM662757
| | Sample_status | Public on Mar 31 2011
| | Sample_submission_date | Jan 27 2011
| | Sample_last_update_date | Mar 31 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted immediately following microdissection using the PicoPure RNA isolation kit (Arcturus, Mountain View, CA, USA) according to the manufacturer’s instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotin-labeled nucleotides were incorporated to obtain biotin-labeled aRNA required for Affymetrix microarray hybridization.
| | Sample_hyb_protocol | Standard Affymetrix protocol.
| | Sample_scan_protocol | Standard Affymetrix protocol.
| | Sample_data_processing | RMA, using the “affy” package from Bioconductor.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Paolo,,Provero
| | Sample_contact_email | paolo.provero@gmail.com
| | Sample_contact_department | Genetics, Biology and Biochemistry
| | Sample_contact_institute | University of Turin
| | Sample_contact_address | Via Nizza 52
| | Sample_contact_city | Torino
| | Sample_contact_zip/postal_code | I-10100
| | Sample_contact_country | Italy
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM662nnn/GSM662757/suppl/GSM662757.CEL.gz
| | Sample_series_id | GSE26910
| | Sample_data_row_count | 54675
| | |
|
GSM662758 | GPL570 |
|
prostate normal 2
|
Normal prostate stroma
|
tissue: prostate
normal/tumor: normal
|
Gene expression profiling of laser-microdissected stroma.
|
| Sample_geo_accession | GSM662758
| | Sample_status | Public on Mar 31 2011
| | Sample_submission_date | Jan 27 2011
| | Sample_last_update_date | Mar 31 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted immediately following microdissection using the PicoPure RNA isolation kit (Arcturus, Mountain View, CA, USA) according to the manufacturer’s instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotin-labeled nucleotides were incorporated to obtain biotin-labeled aRNA required for Affymetrix microarray hybridization.
| | Sample_hyb_protocol | Standard Affymetrix protocol.
| | Sample_scan_protocol | Standard Affymetrix protocol.
| | Sample_data_processing | RMA, using the “affy” package from Bioconductor.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Paolo,,Provero
| | Sample_contact_email | paolo.provero@gmail.com
| | Sample_contact_department | Genetics, Biology and Biochemistry
| | Sample_contact_institute | University of Turin
| | Sample_contact_address | Via Nizza 52
| | Sample_contact_city | Torino
| | Sample_contact_zip/postal_code | I-10100
| | Sample_contact_country | Italy
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM662nnn/GSM662758/suppl/GSM662758.CEL.gz
| | Sample_series_id | GSE26910
| | Sample_data_row_count | 54675
| | |
|
GSM662759 | GPL570 |
|
prostate tumor 2
|
Stroma associated to prostate invasive tumor
|
tissue: prostate
normal/tumor: tumor
|
Gene expression profiling of laser-microdissected stroma.
|
| Sample_geo_accession | GSM662759
| | Sample_status | Public on Mar 31 2011
| | Sample_submission_date | Jan 27 2011
| | Sample_last_update_date | Mar 31 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted immediately following microdissection using the PicoPure RNA isolation kit (Arcturus, Mountain View, CA, USA) according to the manufacturer’s instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotin-labeled nucleotides were incorporated to obtain biotin-labeled aRNA required for Affymetrix microarray hybridization.
| | Sample_hyb_protocol | Standard Affymetrix protocol.
| | Sample_scan_protocol | Standard Affymetrix protocol.
| | Sample_data_processing | RMA, using the “affy” package from Bioconductor.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Paolo,,Provero
| | Sample_contact_email | paolo.provero@gmail.com
| | Sample_contact_department | Genetics, Biology and Biochemistry
| | Sample_contact_institute | University of Turin
| | Sample_contact_address | Via Nizza 52
| | Sample_contact_city | Torino
| | Sample_contact_zip/postal_code | I-10100
| | Sample_contact_country | Italy
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM662nnn/GSM662759/suppl/GSM662759.CEL.gz
| | Sample_series_id | GSE26910
| | Sample_data_row_count | 54675
| | |
|
GSM662760 | GPL570 |
|
prostate normal 3
|
Normal prostate stroma
|
tissue: prostate
normal/tumor: normal
|
Gene expression profiling of laser-microdissected stroma.
|
| Sample_geo_accession | GSM662760
| | Sample_status | Public on Mar 31 2011
| | Sample_submission_date | Jan 27 2011
| | Sample_last_update_date | Mar 31 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted immediately following microdissection using the PicoPure RNA isolation kit (Arcturus, Mountain View, CA, USA) according to the manufacturer’s instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotin-labeled nucleotides were incorporated to obtain biotin-labeled aRNA required for Affymetrix microarray hybridization.
| | Sample_hyb_protocol | Standard Affymetrix protocol.
| | Sample_scan_protocol | Standard Affymetrix protocol.
| | Sample_data_processing | RMA, using the “affy” package from Bioconductor.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Paolo,,Provero
| | Sample_contact_email | paolo.provero@gmail.com
| | Sample_contact_department | Genetics, Biology and Biochemistry
| | Sample_contact_institute | University of Turin
| | Sample_contact_address | Via Nizza 52
| | Sample_contact_city | Torino
| | Sample_contact_zip/postal_code | I-10100
| | Sample_contact_country | Italy
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM662nnn/GSM662760/suppl/GSM662760.CEL.gz
| | Sample_series_id | GSE26910
| | Sample_data_row_count | 54675
| | |
|
GSM662761 | GPL570 |
|
prostate tumor 3
|
Stroma associated to prostate invasive tumor
|
tissue: prostate
normal/tumor: tumor
|
Gene expression profiling of laser-microdissected stroma.
|
| Sample_geo_accession | GSM662761
| | Sample_status | Public on Mar 31 2011
| | Sample_submission_date | Jan 27 2011
| | Sample_last_update_date | Mar 31 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted immediately following microdissection using the PicoPure RNA isolation kit (Arcturus, Mountain View, CA, USA) according to the manufacturer’s instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotin-labeled nucleotides were incorporated to obtain biotin-labeled aRNA required for Affymetrix microarray hybridization.
| | Sample_hyb_protocol | Standard Affymetrix protocol.
| | Sample_scan_protocol | Standard Affymetrix protocol.
| | Sample_data_processing | RMA, using the “affy” package from Bioconductor.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Paolo,,Provero
| | Sample_contact_email | paolo.provero@gmail.com
| | Sample_contact_department | Genetics, Biology and Biochemistry
| | Sample_contact_institute | University of Turin
| | Sample_contact_address | Via Nizza 52
| | Sample_contact_city | Torino
| | Sample_contact_zip/postal_code | I-10100
| | Sample_contact_country | Italy
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM662nnn/GSM662761/suppl/GSM662761.CEL.gz
| | Sample_series_id | GSE26910
| | Sample_data_row_count | 54675
| | |
|
GSM662762 | GPL570 |
|
prostate normal 4
|
Normal prostate stroma
|
tissue: prostate
normal/tumor: normal
|
Gene expression profiling of laser-microdissected stroma.
|
| Sample_geo_accession | GSM662762
| | Sample_status | Public on Mar 31 2011
| | Sample_submission_date | Jan 27 2011
| | Sample_last_update_date | Mar 31 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted immediately following microdissection using the PicoPure RNA isolation kit (Arcturus, Mountain View, CA, USA) according to the manufacturer’s instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotin-labeled nucleotides were incorporated to obtain biotin-labeled aRNA required for Affymetrix microarray hybridization.
| | Sample_hyb_protocol | Standard Affymetrix protocol.
| | Sample_scan_protocol | Standard Affymetrix protocol.
| | Sample_data_processing | RMA, using the “affy” package from Bioconductor.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Paolo,,Provero
| | Sample_contact_email | paolo.provero@gmail.com
| | Sample_contact_department | Genetics, Biology and Biochemistry
| | Sample_contact_institute | University of Turin
| | Sample_contact_address | Via Nizza 52
| | Sample_contact_city | Torino
| | Sample_contact_zip/postal_code | I-10100
| | Sample_contact_country | Italy
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM662nnn/GSM662762/suppl/GSM662762.CEL.gz
| | Sample_series_id | GSE26910
| | Sample_data_row_count | 54675
| | |
|
GSM662763 | GPL570 |
|
prostate tumor 4
|
Stroma associated to prostate invasive tumor
|
tissue: prostate
normal/tumor: tumor
|
Gene expression profiling of laser-microdissected stroma.
|
| Sample_geo_accession | GSM662763
| | Sample_status | Public on Mar 31 2011
| | Sample_submission_date | Jan 27 2011
| | Sample_last_update_date | Mar 31 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted immediately following microdissection using the PicoPure RNA isolation kit (Arcturus, Mountain View, CA, USA) according to the manufacturer’s instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotin-labeled nucleotides were incorporated to obtain biotin-labeled aRNA required for Affymetrix microarray hybridization.
| | Sample_hyb_protocol | Standard Affymetrix protocol.
| | Sample_scan_protocol | Standard Affymetrix protocol.
| | Sample_data_processing | RMA, using the “affy” package from Bioconductor.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Paolo,,Provero
| | Sample_contact_email | paolo.provero@gmail.com
| | Sample_contact_department | Genetics, Biology and Biochemistry
| | Sample_contact_institute | University of Turin
| | Sample_contact_address | Via Nizza 52
| | Sample_contact_city | Torino
| | Sample_contact_zip/postal_code | I-10100
| | Sample_contact_country | Italy
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM662nnn/GSM662763/suppl/GSM662763.CEL.gz
| | Sample_series_id | GSE26910
| | Sample_data_row_count | 54675
| | |
|
GSM662764 | GPL570 |
|
prostate normal 5
|
Normal prostate stroma
|
tissue: prostate
normal/tumor: normal
|
Gene expression profiling of laser-microdissected stroma.
|
| Sample_geo_accession | GSM662764
| | Sample_status | Public on Mar 31 2011
| | Sample_submission_date | Jan 27 2011
| | Sample_last_update_date | Mar 31 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted immediately following microdissection using the PicoPure RNA isolation kit (Arcturus, Mountain View, CA, USA) according to the manufacturer’s instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotin-labeled nucleotides were incorporated to obtain biotin-labeled aRNA required for Affymetrix microarray hybridization.
| | Sample_hyb_protocol | Standard Affymetrix protocol.
| | Sample_scan_protocol | Standard Affymetrix protocol.
| | Sample_data_processing | RMA, using the “affy” package from Bioconductor.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Paolo,,Provero
| | Sample_contact_email | paolo.provero@gmail.com
| | Sample_contact_department | Genetics, Biology and Biochemistry
| | Sample_contact_institute | University of Turin
| | Sample_contact_address | Via Nizza 52
| | Sample_contact_city | Torino
| | Sample_contact_zip/postal_code | I-10100
| | Sample_contact_country | Italy
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM662nnn/GSM662764/suppl/GSM662764.CEL.gz
| | Sample_series_id | GSE26910
| | Sample_data_row_count | 54675
| | |
|
GSM662765 | GPL570 |
|
prostate tumor 5
|
Stroma associated to prostate invasive tumor
|
tissue: prostate
normal/tumor: tumor
|
Gene expression profiling of laser-microdissected stroma.
|
| Sample_geo_accession | GSM662765
| | Sample_status | Public on Mar 31 2011
| | Sample_submission_date | Jan 27 2011
| | Sample_last_update_date | Mar 31 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted immediately following microdissection using the PicoPure RNA isolation kit (Arcturus, Mountain View, CA, USA) according to the manufacturer’s instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotin-labeled nucleotides were incorporated to obtain biotin-labeled aRNA required for Affymetrix microarray hybridization.
| | Sample_hyb_protocol | Standard Affymetrix protocol.
| | Sample_scan_protocol | Standard Affymetrix protocol.
| | Sample_data_processing | RMA, using the “affy” package from Bioconductor.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Paolo,,Provero
| | Sample_contact_email | paolo.provero@gmail.com
| | Sample_contact_department | Genetics, Biology and Biochemistry
| | Sample_contact_institute | University of Turin
| | Sample_contact_address | Via Nizza 52
| | Sample_contact_city | Torino
| | Sample_contact_zip/postal_code | I-10100
| | Sample_contact_country | Italy
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM662nnn/GSM662765/suppl/GSM662765.CEL.gz
| | Sample_series_id | GSE26910
| | Sample_data_row_count | 54675
| | |
|
GSM662766 | GPL570 |
|
prostate normal 6
|
Normal prostate stroma
|
tissue: prostate
normal/tumor: normal
|
Gene expression profiling of laser-microdissected stroma.
|
| Sample_geo_accession | GSM662766
| | Sample_status | Public on Mar 31 2011
| | Sample_submission_date | Jan 27 2011
| | Sample_last_update_date | Mar 31 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted immediately following microdissection using the PicoPure RNA isolation kit (Arcturus, Mountain View, CA, USA) according to the manufacturer’s instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotin-labeled nucleotides were incorporated to obtain biotin-labeled aRNA required for Affymetrix microarray hybridization.
| | Sample_hyb_protocol | Standard Affymetrix protocol.
| | Sample_scan_protocol | Standard Affymetrix protocol.
| | Sample_data_processing | RMA, using the “affy” package from Bioconductor.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Paolo,,Provero
| | Sample_contact_email | paolo.provero@gmail.com
| | Sample_contact_department | Genetics, Biology and Biochemistry
| | Sample_contact_institute | University of Turin
| | Sample_contact_address | Via Nizza 52
| | Sample_contact_city | Torino
| | Sample_contact_zip/postal_code | I-10100
| | Sample_contact_country | Italy
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM662nnn/GSM662766/suppl/GSM662766.CEL.gz
| | Sample_series_id | GSE26910
| | Sample_data_row_count | 54675
| | |
|
GSM662767 | GPL570 |
|
prostate tumor 6
|
Stroma associated to prostate invasive tumor
|
tissue: prostate
normal/tumor: tumor
|
Gene expression profiling of laser-microdissected stroma.
|
| Sample_geo_accession | GSM662767
| | Sample_status | Public on Mar 31 2011
| | Sample_submission_date | Jan 27 2011
| | Sample_last_update_date | Mar 31 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted immediately following microdissection using the PicoPure RNA isolation kit (Arcturus, Mountain View, CA, USA) according to the manufacturer’s instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotin-labeled nucleotides were incorporated to obtain biotin-labeled aRNA required for Affymetrix microarray hybridization.
| | Sample_hyb_protocol | Standard Affymetrix protocol.
| | Sample_scan_protocol | Standard Affymetrix protocol.
| | Sample_data_processing | RMA, using the “affy” package from Bioconductor.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Paolo,,Provero
| | Sample_contact_email | paolo.provero@gmail.com
| | Sample_contact_department | Genetics, Biology and Biochemistry
| | Sample_contact_institute | University of Turin
| | Sample_contact_address | Via Nizza 52
| | Sample_contact_city | Torino
| | Sample_contact_zip/postal_code | I-10100
| | Sample_contact_country | Italy
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM662nnn/GSM662767/suppl/GSM662767.CEL.gz
| | Sample_series_id | GSE26910
| | Sample_data_row_count | 54675
| | |
|
GSM662768 | GPL570 |
|
breast normal 1
|
Normal breast stroma
|
tissue: breast
normal/tumor: normal
|
Gene expression profiling of laser-microdissected stroma.
|
| Sample_geo_accession | GSM662768
| | Sample_status | Public on Mar 31 2011
| | Sample_submission_date | Jan 27 2011
| | Sample_last_update_date | Mar 31 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted immediately following microdissection using the PicoPure RNA isolation kit (Arcturus, Mountain View, CA, USA) according to the manufacturer’s instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotin-labeled nucleotides were incorporated to obtain biotin-labeled aRNA required for Affymetrix microarray hybridization.
| | Sample_hyb_protocol | Standard Affymetrix protocol.
| | Sample_scan_protocol | Standard Affymetrix protocol.
| | Sample_data_processing | RMA, using the “affy” package from Bioconductor.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Paolo,,Provero
| | Sample_contact_email | paolo.provero@gmail.com
| | Sample_contact_department | Genetics, Biology and Biochemistry
| | Sample_contact_institute | University of Turin
| | Sample_contact_address | Via Nizza 52
| | Sample_contact_city | Torino
| | Sample_contact_zip/postal_code | I-10100
| | Sample_contact_country | Italy
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM662nnn/GSM662768/suppl/GSM662768.CEL.gz
| | Sample_series_id | GSE26910
| | Sample_data_row_count | 54675
| | |
|
GSM662769 | GPL570 |
|
breast tumor 1
|
Stroma associated to breast invasive tumor
|
tissue: breast
normal/tumor: tumor
|
Gene expression profiling of laser-microdissected stroma.
|
| Sample_geo_accession | GSM662769
| | Sample_status | Public on Mar 31 2011
| | Sample_submission_date | Jan 27 2011
| | Sample_last_update_date | Mar 31 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted immediately following microdissection using the PicoPure RNA isolation kit (Arcturus, Mountain View, CA, USA) according to the manufacturer’s instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotin-labeled nucleotides were incorporated to obtain biotin-labeled aRNA required for Affymetrix microarray hybridization.
| | Sample_hyb_protocol | Standard Affymetrix protocol.
| | Sample_scan_protocol | Standard Affymetrix protocol.
| | Sample_data_processing | RMA, using the “affy” package from Bioconductor.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Paolo,,Provero
| | Sample_contact_email | paolo.provero@gmail.com
| | Sample_contact_department | Genetics, Biology and Biochemistry
| | Sample_contact_institute | University of Turin
| | Sample_contact_address | Via Nizza 52
| | Sample_contact_city | Torino
| | Sample_contact_zip/postal_code | I-10100
| | Sample_contact_country | Italy
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM662nnn/GSM662769/suppl/GSM662769.CEL.gz
| | Sample_series_id | GSE26910
| | Sample_data_row_count | 54675
| | |
|
GSM662770 | GPL570 |
|
breast normal 2
|
Normal breast stroma
|
tissue: breast
normal/tumor: normal
|
Gene expression profiling of laser-microdissected stroma.
|
| Sample_geo_accession | GSM662770
| | Sample_status | Public on Mar 31 2011
| | Sample_submission_date | Jan 27 2011
| | Sample_last_update_date | Mar 31 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted immediately following microdissection using the PicoPure RNA isolation kit (Arcturus, Mountain View, CA, USA) according to the manufacturer’s instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotin-labeled nucleotides were incorporated to obtain biotin-labeled aRNA required for Affymetrix microarray hybridization.
| | Sample_hyb_protocol | Standard Affymetrix protocol.
| | Sample_scan_protocol | Standard Affymetrix protocol.
| | Sample_data_processing | RMA, using the “affy” package from Bioconductor.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Paolo,,Provero
| | Sample_contact_email | paolo.provero@gmail.com
| | Sample_contact_department | Genetics, Biology and Biochemistry
| | Sample_contact_institute | University of Turin
| | Sample_contact_address | Via Nizza 52
| | Sample_contact_city | Torino
| | Sample_contact_zip/postal_code | I-10100
| | Sample_contact_country | Italy
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM662nnn/GSM662770/suppl/GSM662770.CEL.gz
| | Sample_series_id | GSE26910
| | Sample_data_row_count | 54675
| | |
|
GSM662771 | GPL570 |
|
breast tumor 2
|
Stroma associated to breast invasive tumor
|
tissue: breast
normal/tumor: tumor
|
Gene expression profiling of laser-microdissected stroma.
|
| Sample_geo_accession | GSM662771
| | Sample_status | Public on Mar 31 2011
| | Sample_submission_date | Jan 27 2011
| | Sample_last_update_date | Mar 31 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted immediately following microdissection using the PicoPure RNA isolation kit (Arcturus, Mountain View, CA, USA) according to the manufacturer’s instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotin-labeled nucleotides were incorporated to obtain biotin-labeled aRNA required for Affymetrix microarray hybridization.
| | Sample_hyb_protocol | Standard Affymetrix protocol.
| | Sample_scan_protocol | Standard Affymetrix protocol.
| | Sample_data_processing | RMA, using the “affy” package from Bioconductor.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Paolo,,Provero
| | Sample_contact_email | paolo.provero@gmail.com
| | Sample_contact_department | Genetics, Biology and Biochemistry
| | Sample_contact_institute | University of Turin
| | Sample_contact_address | Via Nizza 52
| | Sample_contact_city | Torino
| | Sample_contact_zip/postal_code | I-10100
| | Sample_contact_country | Italy
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM662nnn/GSM662771/suppl/GSM662771.CEL.gz
| | Sample_series_id | GSE26910
| | Sample_data_row_count | 54675
| | |
|
GSM662772 | GPL570 |
|
breast normal 3
|
Normal breast stroma
|
tissue: breast
normal/tumor: normal
|
Gene expression profiling of laser-microdissected stroma.
|
| Sample_geo_accession | GSM662772
| | Sample_status | Public on Mar 31 2011
| | Sample_submission_date | Jan 27 2011
| | Sample_last_update_date | Mar 31 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted immediately following microdissection using the PicoPure RNA isolation kit (Arcturus, Mountain View, CA, USA) according to the manufacturer’s instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotin-labeled nucleotides were incorporated to obtain biotin-labeled aRNA required for Affymetrix microarray hybridization.
| | Sample_hyb_protocol | Standard Affymetrix protocol.
| | Sample_scan_protocol | Standard Affymetrix protocol.
| | Sample_data_processing | RMA, using the “affy” package from Bioconductor.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Paolo,,Provero
| | Sample_contact_email | paolo.provero@gmail.com
| | Sample_contact_department | Genetics, Biology and Biochemistry
| | Sample_contact_institute | University of Turin
| | Sample_contact_address | Via Nizza 52
| | Sample_contact_city | Torino
| | Sample_contact_zip/postal_code | I-10100
| | Sample_contact_country | Italy
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM662nnn/GSM662772/suppl/GSM662772.CEL.gz
| | Sample_series_id | GSE26910
| | Sample_data_row_count | 54675
| | |
|
GSM662773 | GPL570 |
|
breast tumor 3
|
Stroma associated to breast invasive tumor
|
tissue: breast
normal/tumor: tumor
|
Gene expression profiling of laser-microdissected stroma.
|
| Sample_geo_accession | GSM662773
| | Sample_status | Public on Mar 31 2011
| | Sample_submission_date | Jan 27 2011
| | Sample_last_update_date | Mar 31 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted immediately following microdissection using the PicoPure RNA isolation kit (Arcturus, Mountain View, CA, USA) according to the manufacturer’s instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotin-labeled nucleotides were incorporated to obtain biotin-labeled aRNA required for Affymetrix microarray hybridization.
| | Sample_hyb_protocol | Standard Affymetrix protocol.
| | Sample_scan_protocol | Standard Affymetrix protocol.
| | Sample_data_processing | RMA, using the “affy” package from Bioconductor.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Paolo,,Provero
| | Sample_contact_email | paolo.provero@gmail.com
| | Sample_contact_department | Genetics, Biology and Biochemistry
| | Sample_contact_institute | University of Turin
| | Sample_contact_address | Via Nizza 52
| | Sample_contact_city | Torino
| | Sample_contact_zip/postal_code | I-10100
| | Sample_contact_country | Italy
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM662nnn/GSM662773/suppl/GSM662773.CEL.gz
| | Sample_series_id | GSE26910
| | Sample_data_row_count | 54675
| | |
|
GSM662774 | GPL570 |
|
breast normal 4
|
Normal breast stroma
|
tissue: breast
normal/tumor: normal
|
Gene expression profiling of laser-microdissected stroma.
|
| Sample_geo_accession | GSM662774
| | Sample_status | Public on Mar 31 2011
| | Sample_submission_date | Jan 27 2011
| | Sample_last_update_date | Mar 31 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted immediately following microdissection using the PicoPure RNA isolation kit (Arcturus, Mountain View, CA, USA) according to the manufacturer’s instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotin-labeled nucleotides were incorporated to obtain biotin-labeled aRNA required for Affymetrix microarray hybridization.
| | Sample_hyb_protocol | Standard Affymetrix protocol.
| | Sample_scan_protocol | Standard Affymetrix protocol.
| | Sample_data_processing | RMA, using the “affy” package from Bioconductor.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Paolo,,Provero
| | Sample_contact_email | paolo.provero@gmail.com
| | Sample_contact_department | Genetics, Biology and Biochemistry
| | Sample_contact_institute | University of Turin
| | Sample_contact_address | Via Nizza 52
| | Sample_contact_city | Torino
| | Sample_contact_zip/postal_code | I-10100
| | Sample_contact_country | Italy
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM662nnn/GSM662774/suppl/GSM662774.CEL.gz
| | Sample_series_id | GSE26910
| | Sample_data_row_count | 54675
| | |
|
GSM662775 | GPL570 |
|
breast tumor 4
|
Stroma associated to breast invasive tumor
|
tissue: breast
normal/tumor: tumor
|
Gene expression profiling of laser-microdissected stroma.
|
| Sample_geo_accession | GSM662775
| | Sample_status | Public on Mar 31 2011
| | Sample_submission_date | Jan 27 2011
| | Sample_last_update_date | Mar 31 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted immediately following microdissection using the PicoPure RNA isolation kit (Arcturus, Mountain View, CA, USA) according to the manufacturer’s instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotin-labeled nucleotides were incorporated to obtain biotin-labeled aRNA required for Affymetrix microarray hybridization.
| | Sample_hyb_protocol | Standard Affymetrix protocol.
| | Sample_scan_protocol | Standard Affymetrix protocol.
| | Sample_data_processing | RMA, using the “affy” package from Bioconductor.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Paolo,,Provero
| | Sample_contact_email | paolo.provero@gmail.com
| | Sample_contact_department | Genetics, Biology and Biochemistry
| | Sample_contact_institute | University of Turin
| | Sample_contact_address | Via Nizza 52
| | Sample_contact_city | Torino
| | Sample_contact_zip/postal_code | I-10100
| | Sample_contact_country | Italy
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM662nnn/GSM662775/suppl/GSM662775.CEL.gz
| | Sample_series_id | GSE26910
| | Sample_data_row_count | 54675
| | |
|
GSM662776 | GPL570 |
|
breast normal 5
|
Normal breast stroma
|
tissue: breast
normal/tumor: normal
|
Gene expression profiling of laser-microdissected stroma.
|
| Sample_geo_accession | GSM662776
| | Sample_status | Public on Mar 31 2011
| | Sample_submission_date | Jan 27 2011
| | Sample_last_update_date | Mar 31 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted immediately following microdissection using the PicoPure RNA isolation kit (Arcturus, Mountain View, CA, USA) according to the manufacturer’s instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotin-labeled nucleotides were incorporated to obtain biotin-labeled aRNA required for Affymetrix microarray hybridization.
| | Sample_hyb_protocol | Standard Affymetrix protocol.
| | Sample_scan_protocol | Standard Affymetrix protocol.
| | Sample_data_processing | RMA, using the “affy” package from Bioconductor.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Paolo,,Provero
| | Sample_contact_email | paolo.provero@gmail.com
| | Sample_contact_department | Genetics, Biology and Biochemistry
| | Sample_contact_institute | University of Turin
| | Sample_contact_address | Via Nizza 52
| | Sample_contact_city | Torino
| | Sample_contact_zip/postal_code | I-10100
| | Sample_contact_country | Italy
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM662nnn/GSM662776/suppl/GSM662776.CEL.gz
| | Sample_series_id | GSE26910
| | Sample_data_row_count | 54675
| | |
|
GSM662777 | GPL570 |
|
breast tumor 5
|
Stroma associated to breast invasive tumor
|
tissue: breast
normal/tumor: tumor
|
Gene expression profiling of laser-microdissected stroma.
|
| Sample_geo_accession | GSM662777
| | Sample_status | Public on Mar 31 2011
| | Sample_submission_date | Jan 27 2011
| | Sample_last_update_date | Mar 31 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted immediately following microdissection using the PicoPure RNA isolation kit (Arcturus, Mountain View, CA, USA) according to the manufacturer’s instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotin-labeled nucleotides were incorporated to obtain biotin-labeled aRNA required for Affymetrix microarray hybridization.
| | Sample_hyb_protocol | Standard Affymetrix protocol.
| | Sample_scan_protocol | Standard Affymetrix protocol.
| | Sample_data_processing | RMA, using the “affy” package from Bioconductor.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Paolo,,Provero
| | Sample_contact_email | paolo.provero@gmail.com
| | Sample_contact_department | Genetics, Biology and Biochemistry
| | Sample_contact_institute | University of Turin
| | Sample_contact_address | Via Nizza 52
| | Sample_contact_city | Torino
| | Sample_contact_zip/postal_code | I-10100
| | Sample_contact_country | Italy
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM662nnn/GSM662777/suppl/GSM662777.CEL.gz
| | Sample_series_id | GSE26910
| | Sample_data_row_count | 54675
| | |
|
GSM662778 | GPL570 |
|
breast normal 6
|
Normal breast stroma
|
tissue: breast
normal/tumor: normal
|
Gene expression profiling of laser-microdissected stroma.
|
| Sample_geo_accession | GSM662778
| | Sample_status | Public on Mar 31 2011
| | Sample_submission_date | Jan 27 2011
| | Sample_last_update_date | Mar 31 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted immediately following microdissection using the PicoPure RNA isolation kit (Arcturus, Mountain View, CA, USA) according to the manufacturer’s instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotin-labeled nucleotides were incorporated to obtain biotin-labeled aRNA required for Affymetrix microarray hybridization.
| | Sample_hyb_protocol | Standard Affymetrix protocol.
| | Sample_scan_protocol | Standard Affymetrix protocol.
| | Sample_data_processing | RMA, using the “affy” package from Bioconductor.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Paolo,,Provero
| | Sample_contact_email | paolo.provero@gmail.com
| | Sample_contact_department | Genetics, Biology and Biochemistry
| | Sample_contact_institute | University of Turin
| | Sample_contact_address | Via Nizza 52
| | Sample_contact_city | Torino
| | Sample_contact_zip/postal_code | I-10100
| | Sample_contact_country | Italy
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM662nnn/GSM662778/suppl/GSM662778.CEL.gz
| | Sample_series_id | GSE26910
| | Sample_data_row_count | 54675
| | |
|
GSM662779 | GPL570 |
|
breast tumor 6
|
Stroma associated to breast invasive tumor
|
tissue: breast
normal/tumor: tumor
|
Gene expression profiling of laser-microdissected stroma.
|
| Sample_geo_accession | GSM662779
| | Sample_status | Public on Mar 31 2011
| | Sample_submission_date | Jan 27 2011
| | Sample_last_update_date | Mar 31 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted immediately following microdissection using the PicoPure RNA isolation kit (Arcturus, Mountain View, CA, USA) according to the manufacturer’s instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotin-labeled nucleotides were incorporated to obtain biotin-labeled aRNA required for Affymetrix microarray hybridization.
| | Sample_hyb_protocol | Standard Affymetrix protocol.
| | Sample_scan_protocol | Standard Affymetrix protocol.
| | Sample_data_processing | RMA, using the “affy” package from Bioconductor.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Paolo,,Provero
| | Sample_contact_email | paolo.provero@gmail.com
| | Sample_contact_department | Genetics, Biology and Biochemistry
| | Sample_contact_institute | University of Turin
| | Sample_contact_address | Via Nizza 52
| | Sample_contact_city | Torino
| | Sample_contact_zip/postal_code | I-10100
| | Sample_contact_country | Italy
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM662nnn/GSM662779/suppl/GSM662779.CEL.gz
| | Sample_series_id | GSE26910
| | Sample_data_row_count | 54675
| | |
|
| |
| |
Make groups for comparisons |
(2 groups will be compared at a time) |
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| Select GSMs and click on "Add groups" |
Enter the group name here: |
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