Search results for the GEO ID: GSE27018  |
(Click on the check boxes provided under "Select for analysis", to initiate grouping) |
(Once the selection is made, click on "Add groups" in "Make groups for comparison", to make a group. Scroll down) |
|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM665042 | GPL570 |
|
CCdl1797TT_none_3d
|
Breast
|
sample name: C25_04-18-06
tumor sample id: CCdl1797TT
tumor sample histological grade: low, T1
fibroblast sample id: none
treatment class: none
time: 3d
tissue: breat cancer tumor
treatment: tumor not co-cultured with fibroblast
|
|
| Sample_geo_accession | GSM665042
| | Sample_status | Public on Feb 08 2011
| | Sample_submission_date | Feb 01 2011
| | Sample_last_update_date | Feb 08 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | total epithelial cell RNA was directly extracted from duplicate wells of each treatment using the Rneasy kit (Qiagen)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | cRNA synthesis was performed with 2 µg of total cellular RNA, and labelled based on the protocol outlined by Affymetrix Inc. (Santa Clara, CA), with few modifications
| | Sample_hyb_protocol | standard Affymetrix procedure
| | Sample_scan_protocol | standard Affymetrix procedure
| | Sample_data_processing | RMA using Affymetrix Expression Console
| | Sample_platform_id | GPL570
| | Sample_contact_name | Junhee,,Seok
| | Sample_contact_email | jseok@stanford.edu
| | Sample_contact_institute | Stanford University
| | Sample_contact_address | 318 Campus Drive W310 - Davis Lab
| | Sample_contact_city | Stanford
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 94305
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM665nnn/GSM665042/suppl/GSM665042_C25_04_18_06.CEL.gz
| | Sample_series_id | GSE27018
| | Sample_data_row_count | 54613
| | |
|
GSM665066 | GPL570 |
|
CCdl22TT_none_3d
|
Breast
|
sample name: D25_04-18-06
tumor sample id: CCdl22TT
tumor sample histological grade: low, T1
fibroblast sample id: none
treatment class: none
time: 3d
tissue: breat cancer tumor
treatment: tumor not co-cultured with fibroblast
|
|
| Sample_geo_accession | GSM665066
| | Sample_status | Public on Feb 08 2011
| | Sample_submission_date | Feb 01 2011
| | Sample_last_update_date | Feb 08 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | total epithelial cell RNA was directly extracted from duplicate wells of each treatment using the Rneasy kit (Qiagen)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | cRNA synthesis was performed with 2 µg of total cellular RNA, and labelled based on the protocol outlined by Affymetrix Inc. (Santa Clara, CA), with few modifications
| | Sample_hyb_protocol | standard Affymetrix procedure
| | Sample_scan_protocol | standard Affymetrix procedure
| | Sample_data_processing | RMA using Affymetrix Expression Console
| | Sample_platform_id | GPL570
| | Sample_contact_name | Junhee,,Seok
| | Sample_contact_email | jseok@stanford.edu
| | Sample_contact_institute | Stanford University
| | Sample_contact_address | 318 Campus Drive W310 - Davis Lab
| | Sample_contact_city | Stanford
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 94305
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM665nnn/GSM665066/suppl/GSM665066_D25_04_18_06.CEL.gz
| | Sample_series_id | GSE27018
| | Sample_data_row_count | 54613
| | |
|
GSM665067 | GPL570 |
|
CCdl67TT_none_3d
|
Breast
|
sample name: C23_04-15-06
tumor sample id: CCdl66TT
tumor sample histological grade: low, T1
fibroblast sample id: none
treatment class: none
time: 3d
tissue: breat cancer tumor
treatment: tumor not co-cultured with fibroblast
|
|
| Sample_geo_accession | GSM665067
| | Sample_status | Public on Feb 08 2011
| | Sample_submission_date | Feb 01 2011
| | Sample_last_update_date | Feb 08 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | total epithelial cell RNA was directly extracted from duplicate wells of each treatment using the Rneasy kit (Qiagen)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | cRNA synthesis was performed with 2 µg of total cellular RNA, and labelled based on the protocol outlined by Affymetrix Inc. (Santa Clara, CA), with few modifications
| | Sample_hyb_protocol | standard Affymetrix procedure
| | Sample_scan_protocol | standard Affymetrix procedure
| | Sample_data_processing | RMA using Affymetrix Expression Console
| | Sample_platform_id | GPL570
| | Sample_contact_name | Junhee,,Seok
| | Sample_contact_email | jseok@stanford.edu
| | Sample_contact_institute | Stanford University
| | Sample_contact_address | 318 Campus Drive W310 - Davis Lab
| | Sample_contact_city | Stanford
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 94305
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM665nnn/GSM665067/suppl/GSM665067_C23_04_15_06.CEL.gz
| | Sample_series_id | GSE27018
| | Sample_data_row_count | 54613
| | |
|
GSM665068 | GPL570 |
|
CCdl68TT_none_3d
|
Breast
|
sample name: D23_04-18-06
tumor sample id: CCdl68TT
tumor sample histological grade: low, T1
fibroblast sample id: none
treatment class: none
time: 3d
tissue: breat cancer tumor
treatment: tumor not co-cultured with fibroblast
|
|
| Sample_geo_accession | GSM665068
| | Sample_status | Public on Feb 08 2011
| | Sample_submission_date | Feb 01 2011
| | Sample_last_update_date | Feb 08 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | total epithelial cell RNA was directly extracted from duplicate wells of each treatment using the Rneasy kit (Qiagen)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | cRNA synthesis was performed with 2 µg of total cellular RNA, and labelled based on the protocol outlined by Affymetrix Inc. (Santa Clara, CA), with few modifications
| | Sample_hyb_protocol | standard Affymetrix procedure
| | Sample_scan_protocol | standard Affymetrix procedure
| | Sample_data_processing | RMA using Affymetrix Expression Console
| | Sample_platform_id | GPL570
| | Sample_contact_name | Junhee,,Seok
| | Sample_contact_email | jseok@stanford.edu
| | Sample_contact_institute | Stanford University
| | Sample_contact_address | 318 Campus Drive W310 - Davis Lab
| | Sample_contact_city | Stanford
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 94305
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM665nnn/GSM665068/suppl/GSM665068_D23_04_18_06.CEL.gz
| | Sample_series_id | GSE27018
| | Sample_data_row_count | 54613
| | |
|
GSM665069 | GPL570 |
|
CCdl1797TT_CCdl67TF_3d
|
Breast
|
sample name: C15_04-07-06
tumor sample id: CCdl1797TT
tumor sample histological grade: low, T1
fibroblast sample id: CCdl67TF
fibroblast sample histological grade: low, TF1
time: 3d
tissue: breat cancer tumor
treatment: tumor co-cultured with fibroblast
|
|
| Sample_geo_accession | GSM665069
| | Sample_status | Public on Feb 08 2011
| | Sample_submission_date | Feb 01 2011
| | Sample_last_update_date | Feb 08 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | total epithelial cell RNA was directly extracted from duplicate wells of each treatment using the Rneasy kit (Qiagen)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | cRNA synthesis was performed with 2 µg of total cellular RNA, and labelled based on the protocol outlined by Affymetrix Inc. (Santa Clara, CA), with few modifications
| | Sample_hyb_protocol | standard Affymetrix procedure
| | Sample_scan_protocol | standard Affymetrix procedure
| | Sample_data_processing | RMA using Affymetrix Expression Console
| | Sample_platform_id | GPL570
| | Sample_contact_name | Junhee,,Seok
| | Sample_contact_email | jseok@stanford.edu
| | Sample_contact_institute | Stanford University
| | Sample_contact_address | 318 Campus Drive W310 - Davis Lab
| | Sample_contact_city | Stanford
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 94305
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM665nnn/GSM665069/suppl/GSM665069_C15_04_07_06.CEL.gz
| | Sample_series_id | GSE27018
| | Sample_data_row_count | 54613
| | |
|
GSM665070 | GPL570 |
|
CCdl67TT_CCdl67TF_3d
|
Breast
|
sample name: C13_04-07-06
tumor sample id: CCdl67TT
tumor sample histological grade: low, T1
fibroblast sample id: CCdl67TF
fibroblast sample histological grade: low, TF1
time: 3d
tissue: breat cancer tumor
treatment: tumor co-cultured with fibroblast
|
|
| Sample_geo_accession | GSM665070
| | Sample_status | Public on Feb 08 2011
| | Sample_submission_date | Feb 01 2011
| | Sample_last_update_date | Feb 08 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | total epithelial cell RNA was directly extracted from duplicate wells of each treatment using the Rneasy kit (Qiagen)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | cRNA synthesis was performed with 2 µg of total cellular RNA, and labelled based on the protocol outlined by Affymetrix Inc. (Santa Clara, CA), with few modifications
| | Sample_hyb_protocol | standard Affymetrix procedure
| | Sample_scan_protocol | standard Affymetrix procedure
| | Sample_data_processing | RMA using Affymetrix Expression Console
| | Sample_platform_id | GPL570
| | Sample_contact_name | Junhee,,Seok
| | Sample_contact_email | jseok@stanford.edu
| | Sample_contact_institute | Stanford University
| | Sample_contact_address | 318 Campus Drive W310 - Davis Lab
| | Sample_contact_city | Stanford
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 94305
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM665nnn/GSM665070/suppl/GSM665070_C13_04_07_06.CEL.gz
| | Sample_series_id | GSE27018
| | Sample_data_row_count | 54613
| | |
|
GSM665071 | GPL570 |
|
CCdl1797TT_CCdl257TF_3d
|
Breast
|
sample name: D15_04-12-06
tumor sample id: CCdl1797TT
tumor sample histological grade: low, T1
fibroblast sample id: CCdl257TF
fibroblast sample histological grade: high, TF2
time: 3d
tissue: breat cancer tumor
treatment: tumor co-cultured with fibroblast
|
|
| Sample_geo_accession | GSM665071
| | Sample_status | Public on Feb 08 2011
| | Sample_submission_date | Feb 01 2011
| | Sample_last_update_date | Feb 08 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | total epithelial cell RNA was directly extracted from duplicate wells of each treatment using the Rneasy kit (Qiagen)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | cRNA synthesis was performed with 2 µg of total cellular RNA, and labelled based on the protocol outlined by Affymetrix Inc. (Santa Clara, CA), with few modifications
| | Sample_hyb_protocol | standard Affymetrix procedure
| | Sample_scan_protocol | standard Affymetrix procedure
| | Sample_data_processing | RMA using Affymetrix Expression Console
| | Sample_platform_id | GPL570
| | Sample_contact_name | Junhee,,Seok
| | Sample_contact_email | jseok@stanford.edu
| | Sample_contact_institute | Stanford University
| | Sample_contact_address | 318 Campus Drive W310 - Davis Lab
| | Sample_contact_city | Stanford
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 94305
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM665nnn/GSM665071/suppl/GSM665071_D15_04_12_06.CEL.gz
| | Sample_series_id | GSE27018
| | Sample_data_row_count | 54613
| | |
|
GSM665072 | GPL570 |
|
CCdl22TT_CCdl257TF_3d
|
Breast
|
sample name: D19_04-12-06
tumor sample id: CCdl22TT
tumor sample histological grade: low, T1
fibroblast sample id: CCdl257TF
fibroblast sample histological grade: high, TF2
time: 3d
tissue: breat cancer tumor
treatment: tumor co-cultured with fibroblast
|
|
| Sample_geo_accession | GSM665072
| | Sample_status | Public on Feb 08 2011
| | Sample_submission_date | Feb 01 2011
| | Sample_last_update_date | Feb 08 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | total epithelial cell RNA was directly extracted from duplicate wells of each treatment using the Rneasy kit (Qiagen)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | cRNA synthesis was performed with 2 µg of total cellular RNA, and labelled based on the protocol outlined by Affymetrix Inc. (Santa Clara, CA), with few modifications
| | Sample_hyb_protocol | standard Affymetrix procedure
| | Sample_scan_protocol | standard Affymetrix procedure
| | Sample_data_processing | RMA using Affymetrix Expression Console
| | Sample_platform_id | GPL570
| | Sample_contact_name | Junhee,,Seok
| | Sample_contact_email | jseok@stanford.edu
| | Sample_contact_institute | Stanford University
| | Sample_contact_address | 318 Campus Drive W310 - Davis Lab
| | Sample_contact_city | Stanford
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 94305
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM665nnn/GSM665072/suppl/GSM665072_D19_04_12_06.CEL.gz
| | Sample_series_id | GSE27018
| | Sample_data_row_count | 54613
| | |
|
GSM665073 | GPL570 |
|
CCdl67TT_CCdl257TF_3d
|
Breast
|
sample name: D21_04-18-06
tumor sample id: CCdl67TT
tumor sample histological grade: low, T1
fibroblast sample id: CCdl257TF
fibroblast sample histological grade: high, TF2
time: 3d
tissue: breat cancer tumor
treatment: tumor co-cultured with fibroblast
|
|
| Sample_geo_accession | GSM665073
| | Sample_status | Public on Feb 08 2011
| | Sample_submission_date | Feb 01 2011
| | Sample_last_update_date | Feb 08 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | total epithelial cell RNA was directly extracted from duplicate wells of each treatment using the Rneasy kit (Qiagen)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | cRNA synthesis was performed with 2 µg of total cellular RNA, and labelled based on the protocol outlined by Affymetrix Inc. (Santa Clara, CA), with few modifications
| | Sample_hyb_protocol | standard Affymetrix procedure
| | Sample_scan_protocol | standard Affymetrix procedure
| | Sample_data_processing | RMA using Affymetrix Expression Console
| | Sample_platform_id | GPL570
| | Sample_contact_name | Junhee,,Seok
| | Sample_contact_email | jseok@stanford.edu
| | Sample_contact_institute | Stanford University
| | Sample_contact_address | 318 Campus Drive W310 - Davis Lab
| | Sample_contact_city | Stanford
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 94305
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM665nnn/GSM665073/suppl/GSM665073_D21_04_18_06.CEL.gz
| | Sample_series_id | GSE27018
| | Sample_data_row_count | 54613
| | |
|
GSM665094 | GPL570 |
|
CCdl68TT_CCdl257TF_3d
|
Breast
|
sample name: D17_04-12-06
tumor sample id: CCdl68TT
tumor sample histological grade: low, T1
fibroblast sample id: CCdl257TF
fibroblast sample histological grade: high, TF2
time: 3d
tissue: breat cancer tumor
treatment: tumor co-cultured with fibroblast
|
|
| Sample_geo_accession | GSM665094
| | Sample_status | Public on Feb 08 2011
| | Sample_submission_date | Feb 01 2011
| | Sample_last_update_date | Feb 08 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | total epithelial cell RNA was directly extracted from duplicate wells of each treatment using the Rneasy kit (Qiagen)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | cRNA synthesis was performed with 2 µg of total cellular RNA, and labelled based on the protocol outlined by Affymetrix Inc. (Santa Clara, CA), with few modifications
| | Sample_hyb_protocol | standard Affymetrix procedure
| | Sample_scan_protocol | standard Affymetrix procedure
| | Sample_data_processing | RMA using Affymetrix Expression Console
| | Sample_platform_id | GPL570
| | Sample_contact_name | Junhee,,Seok
| | Sample_contact_email | jseok@stanford.edu
| | Sample_contact_institute | Stanford University
| | Sample_contact_address | 318 Campus Drive W310 - Davis Lab
| | Sample_contact_city | Stanford
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 94305
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM665nnn/GSM665094/suppl/GSM665094_D17_04_12_06.CEL.gz
| | Sample_series_id | GSE27018
| | Sample_data_row_count | 54613
| | |
|
GSM665095 | GPL570 |
|
CCdl257T_none_3d
|
Breast
|
sample name: C31_04-18-06
tumor sample id: CCdl257T
tumor sample histological grade: high, T2
fibroblast sample id: none
treatment class: none
time: 3d
tissue: breat cancer tumor
treatment: tumor not co-cultured with fibroblast
|
|
| Sample_geo_accession | GSM665095
| | Sample_status | Public on Feb 08 2011
| | Sample_submission_date | Feb 01 2011
| | Sample_last_update_date | Feb 08 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | total epithelial cell RNA was directly extracted from duplicate wells of each treatment using the Rneasy kit (Qiagen)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | cRNA synthesis was performed with 2 µg of total cellular RNA, and labelled based on the protocol outlined by Affymetrix Inc. (Santa Clara, CA), with few modifications
| | Sample_hyb_protocol | standard Affymetrix procedure
| | Sample_scan_protocol | standard Affymetrix procedure
| | Sample_data_processing | RMA using Affymetrix Expression Console
| | Sample_platform_id | GPL570
| | Sample_contact_name | Junhee,,Seok
| | Sample_contact_email | jseok@stanford.edu
| | Sample_contact_institute | Stanford University
| | Sample_contact_address | 318 Campus Drive W310 - Davis Lab
| | Sample_contact_city | Stanford
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 94305
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM665nnn/GSM665095/suppl/GSM665095_C31_04_18_06.CEL.gz
| | Sample_series_id | GSE27018
| | Sample_data_row_count | 54613
| | |
|
GSM665102 | GPL570 |
|
CCdl54TT_none_3d
|
Breast
|
sample name: C29_04-15-06
tumor sample id: CCdl54TT
tumor sample histological grade: high, T2
fibroblast sample id: none
treatment class: none
time: 3d
tissue: breat cancer tumor
treatment: tumor not co-cultured with fibroblast
|
|
| Sample_geo_accession | GSM665102
| | Sample_status | Public on Feb 08 2011
| | Sample_submission_date | Feb 01 2011
| | Sample_last_update_date | Feb 08 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | total epithelial cell RNA was directly extracted from duplicate wells of each treatment using the Rneasy kit (Qiagen)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | cRNA synthesis was performed with 2 µg of total cellular RNA, and labelled based on the protocol outlined by Affymetrix Inc. (Santa Clara, CA), with few modifications
| | Sample_hyb_protocol | standard Affymetrix procedure
| | Sample_scan_protocol | standard Affymetrix procedure
| | Sample_data_processing | RMA using Affymetrix Expression Console
| | Sample_platform_id | GPL570
| | Sample_contact_name | Junhee,,Seok
| | Sample_contact_email | jseok@stanford.edu
| | Sample_contact_institute | Stanford University
| | Sample_contact_address | 318 Campus Drive W310 - Davis Lab
| | Sample_contact_city | Stanford
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 94305
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM665nnn/GSM665102/suppl/GSM665102_C29_04_15_06.CEL.gz
| | Sample_series_id | GSE27018
| | Sample_data_row_count | 54613
| | |
|
GSM665103 | GPL570 |
|
CCdl672TT_none_3d
|
Breast
|
sample name: C27_04-15-06
tumor sample id: CCdl672TT
tumor sample histological grade: high, T2
fibroblast sample id: none
treatment class: none
time: 3d
tissue: breat cancer tumor
treatment: tumor not co-cultured with fibroblast
|
|
| Sample_geo_accession | GSM665103
| | Sample_status | Public on Feb 08 2011
| | Sample_submission_date | Feb 01 2011
| | Sample_last_update_date | Feb 08 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | total epithelial cell RNA was directly extracted from duplicate wells of each treatment using the Rneasy kit (Qiagen)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | cRNA synthesis was performed with 2 µg of total cellular RNA, and labelled based on the protocol outlined by Affymetrix Inc. (Santa Clara, CA), with few modifications
| | Sample_hyb_protocol | standard Affymetrix procedure
| | Sample_scan_protocol | standard Affymetrix procedure
| | Sample_data_processing | RMA using Affymetrix Expression Console
| | Sample_platform_id | GPL570
| | Sample_contact_name | Junhee,,Seok
| | Sample_contact_email | jseok@stanford.edu
| | Sample_contact_institute | Stanford University
| | Sample_contact_address | 318 Campus Drive W310 - Davis Lab
| | Sample_contact_city | Stanford
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 94305
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM665nnn/GSM665103/suppl/GSM665103_C27_04_15_06.CEL.gz
| | Sample_series_id | GSE27018
| | Sample_data_row_count | 54613
| | |
|
GSM665450 | GPL570 |
|
CCdl54TT_CCdl67TF_3d
|
Breast
|
sample name: C19_04-07-06
tumor sample id: CCdl54TT
tumor sample histological grade: high, T2
fibroblast sample id: CCdl67TF
fibroblast sample histological grade: low, TF1
time: 3d
tissue: breat cancer tumor
treatment: tumor co-cultured with fibroblast
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| Sample_geo_accession | GSM665450
| | Sample_status | Public on Feb 08 2011
| | Sample_submission_date | Feb 02 2011
| | Sample_last_update_date | Feb 08 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | total epithelial cell RNA was directly extracted from duplicate wells of each treatment using the Rneasy kit (Qiagen)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | cRNA synthesis was performed with 2 µg of total cellular RNA, and labelled based on the protocol outlined by Affymetrix Inc. (Santa Clara, CA), with few modifications
| | Sample_hyb_protocol | standard Affymetrix procedure
| | Sample_scan_protocol | standard Affymetrix procedure
| | Sample_data_processing | RMA using Affymetrix Expression Console
| | Sample_platform_id | GPL570
| | Sample_contact_name | Junhee,,Seok
| | Sample_contact_email | jseok@stanford.edu
| | Sample_contact_institute | Stanford University
| | Sample_contact_address | 318 Campus Drive W310 - Davis Lab
| | Sample_contact_city | Stanford
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 94305
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM665nnn/GSM665450/suppl/GSM665450_C19_04_07_06.CEL.gz
| | Sample_series_id | GSE27018
| | Sample_data_row_count | 54613
| | |
|
GSM665452 | GPL570 |
|
CCdl672TT_CCdl67TF_3d
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Breast
|
sample name: C17_04-07-06
tumor sample id: CCdl672TT
tumor sample histological grade: high, T2
fibroblast sample id: CCdl67TF
fibroblast sample histological grade: low, TF1
time: 3d
tissue: breat cancer tumor
treatment: tumor co-cultured with fibroblast
|
|
| Sample_geo_accession | GSM665452
| | Sample_status | Public on Feb 08 2011
| | Sample_submission_date | Feb 02 2011
| | Sample_last_update_date | Feb 08 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | total epithelial cell RNA was directly extracted from duplicate wells of each treatment using the Rneasy kit (Qiagen)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | cRNA synthesis was performed with 2 µg of total cellular RNA, and labelled based on the protocol outlined by Affymetrix Inc. (Santa Clara, CA), with few modifications
| | Sample_hyb_protocol | standard Affymetrix procedure
| | Sample_scan_protocol | standard Affymetrix procedure
| | Sample_data_processing | RMA using Affymetrix Expression Console
| | Sample_platform_id | GPL570
| | Sample_contact_name | Junhee,,Seok
| | Sample_contact_email | jseok@stanford.edu
| | Sample_contact_institute | Stanford University
| | Sample_contact_address | 318 Campus Drive W310 - Davis Lab
| | Sample_contact_city | Stanford
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 94305
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM665nnn/GSM665452/suppl/GSM665452_C17_04_07_06.CEL.gz
| | Sample_series_id | GSE27018
| | Sample_data_row_count | 54613
| | |
|
GSM665455 | GPL570 |
|
CCdl257T_CCdl257TF_3d
|
Breast
|
sample name: D13_04-12-06
tumor sample id: CCdl257T
tumor sample histological grade: high, T2
fibroblast sample id: CCdl257TF
fibroblast sample histological grade: high, TF2
time: 3d
tissue: breat cancer tumor
treatment: tumor co-cultured with fibroblast
|
|
| Sample_geo_accession | GSM665455
| | Sample_status | Public on Feb 08 2011
| | Sample_submission_date | Feb 02 2011
| | Sample_last_update_date | Feb 08 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | total epithelial cell RNA was directly extracted from duplicate wells of each treatment using the Rneasy kit (Qiagen)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | cRNA synthesis was performed with 2 µg of total cellular RNA, and labelled based on the protocol outlined by Affymetrix Inc. (Santa Clara, CA), with few modifications
| | Sample_hyb_protocol | standard Affymetrix procedure
| | Sample_scan_protocol | standard Affymetrix procedure
| | Sample_data_processing | RMA using Affymetrix Expression Console
| | Sample_platform_id | GPL570
| | Sample_contact_name | Junhee,,Seok
| | Sample_contact_email | jseok@stanford.edu
| | Sample_contact_institute | Stanford University
| | Sample_contact_address | 318 Campus Drive W310 - Davis Lab
| | Sample_contact_city | Stanford
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 94305
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM665nnn/GSM665455/suppl/GSM665455_D13_04_12_06.CEL.gz
| | Sample_series_id | GSE27018
| | Sample_data_row_count | 54613
| | |
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Make groups for comparisons |
(2 groups will be compared at a time) |
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| Select GSMs and click on "Add groups" |
Enter the group name here: |
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