Search results for the GEO ID: GSE27038  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM665999 | GPL1261 |
|
Fe+CRE+Tm, Biological Rep 1
|
mouse liver tissue after ER stress challenge
|
tissue: liver
age: 3-months old
genotype/variation: control
strain: C57Bl/6J
agent: tunicamycin
|
Gene expression data from livers of the control mice at 8 hours after tunicamycin treatment.
|
| Sample_geo_accession | GSM665999
| | Sample_status | Public on Feb 03 2011
| | Sample_submission_date | Feb 03 2011
| | Sample_last_update_date | Feb 03 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Mice were injected intraperitoneally with TM (2µg/gram body weight) or vehicle (150 µM dextrose), and liver tissue was isolated at 8 hours after the injection.
| | Sample_growth_protocol_ch1 | The Ire1α conditional null or control mice (C57Bl/6J strain background) of 3-months old were used for the experiment.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Mouse 430_2 expression Array. GeneChips were washed and stained according to the standard procedures
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data was anaylysed using D-chip and Genespring software
| | Sample_platform_id | GPL1261
| | Sample_contact_name | wenbo,,xu
| | Sample_contact_email | wenboxu@umich.edu
| | Sample_contact_institute | university of michigan
| | Sample_contact_address | MSR BILD II
| | Sample_contact_city | ANN Arbor
| | Sample_contact_state | MI
| | Sample_contact_zip/postal_code | 48190
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM665nnn/GSM665999/suppl/GSM665999.CEL.gz
| | Sample_series_id | GSE27038
| | Sample_data_row_count | 45101
| | |
|
GSM666000 | GPL1261 |
|
Fe+CRE+Tm, Biological Rep 2
|
mouse liver tissue after ER stress challenge
|
tissue: liver
age: 3-months old
genotype/variation: control
strain: C57Bl/6J
agent: tunicamycin
|
Gene expression data from livers of the control mice at 8 hours after tunicamycin treatment.
|
| Sample_geo_accession | GSM666000
| | Sample_status | Public on Feb 03 2011
| | Sample_submission_date | Feb 03 2011
| | Sample_last_update_date | Feb 03 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Mice were injected intraperitoneally with TM (2µg/gram body weight) or vehicle (150 µM dextrose), and liver tissue was isolated at 8 hours after the injection.
| | Sample_growth_protocol_ch1 | The Ire1α conditional null or control mice (C57Bl/6J strain background) of 3-months old were used for the experiment.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Mouse 430_2 expression Array. GeneChips were washed and stained according to the standard procedures
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data was anaylysed using D-chip and Genespring software
| | Sample_platform_id | GPL1261
| | Sample_contact_name | wenbo,,xu
| | Sample_contact_email | wenboxu@umich.edu
| | Sample_contact_institute | university of michigan
| | Sample_contact_address | MSR BILD II
| | Sample_contact_city | ANN Arbor
| | Sample_contact_state | MI
| | Sample_contact_zip/postal_code | 48190
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM666nnn/GSM666000/suppl/GSM666000.CEL.gz
| | Sample_series_id | GSE27038
| | Sample_data_row_count | 45101
| | |
|
GSM666001 | GPL1261 |
|
Fe+CRE+Tm, Biological Rep 3
|
mouse liver tissue after ER stress challenge
|
tissue: liver
age: 3-months old
genotype/variation: control
strain: C57Bl/6J
agent: tunicamycin
|
Gene expression data from livers of the control mice at 8 hours after tunicamycin treatment.
|
| Sample_geo_accession | GSM666001
| | Sample_status | Public on Feb 03 2011
| | Sample_submission_date | Feb 03 2011
| | Sample_last_update_date | Feb 03 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Mice were injected intraperitoneally with TM (2µg/gram body weight) or vehicle (150 µM dextrose), and liver tissue was isolated at 8 hours after the injection.
| | Sample_growth_protocol_ch1 | The Ire1α conditional null or control mice (C57Bl/6J strain background) of 3-months old were used for the experiment.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Mouse 430_2 expression Array. GeneChips were washed and stained according to the standard procedures
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data was anaylysed using D-chip and Genespring software
| | Sample_platform_id | GPL1261
| | Sample_contact_name | wenbo,,xu
| | Sample_contact_email | wenboxu@umich.edu
| | Sample_contact_institute | university of michigan
| | Sample_contact_address | MSR BILD II
| | Sample_contact_city | ANN Arbor
| | Sample_contact_state | MI
| | Sample_contact_zip/postal_code | 48190
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM666nnn/GSM666001/suppl/GSM666001.CEL.gz
| | Sample_series_id | GSE27038
| | Sample_data_row_count | 45101
| | |
|
GSM666002 | GPL1261 |
|
Fe-CRE+Tm, Biological Rep 1
|
mouse liver tissue after ER stress challenge
|
tissue: liver
age: 3-months old
genotype/variation: Ire1α null
strain: C57Bl/6J
agent: tunicamycin
|
Gene expression data from livers of the Ire1α null mice at 8 hours after tunicamycin treatment.
|
| Sample_geo_accession | GSM666002
| | Sample_status | Public on Feb 03 2011
| | Sample_submission_date | Feb 03 2011
| | Sample_last_update_date | Feb 03 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Mice were injected intraperitoneally with TM (2µg/gram body weight) or vehicle (150 µM dextrose), and liver tissue was isolated at 8 hours after the injection.
| | Sample_growth_protocol_ch1 | The Ire1α conditional null or control mice (C57Bl/6J strain background) of 3-months old were used for the experiment.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Mouse 430_2 expression Array. GeneChips were washed and stained according to the standard procedures
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data was anaylysed using D-chip and Genespring software
| | Sample_platform_id | GPL1261
| | Sample_contact_name | wenbo,,xu
| | Sample_contact_email | wenboxu@umich.edu
| | Sample_contact_institute | university of michigan
| | Sample_contact_address | MSR BILD II
| | Sample_contact_city | ANN Arbor
| | Sample_contact_state | MI
| | Sample_contact_zip/postal_code | 48190
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM666nnn/GSM666002/suppl/GSM666002.CEL.gz
| | Sample_series_id | GSE27038
| | Sample_data_row_count | 45101
| | |
|
GSM666003 | GPL1261 |
|
Fe-CRE+Tm, Biological Rep 2
|
mouse liver tissue after ER stress challenge
|
tissue: liver
age: 3-months old
genotype/variation: Ire1α null
strain: C57Bl/6J
agent: tunicamycin
|
Gene expression data from livers of the Ire1α null mice at 8 hours after tunicamycin treatment.
|
| Sample_geo_accession | GSM666003
| | Sample_status | Public on Feb 03 2011
| | Sample_submission_date | Feb 03 2011
| | Sample_last_update_date | Feb 03 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Mice were injected intraperitoneally with TM (2µg/gram body weight) or vehicle (150 µM dextrose), and liver tissue was isolated at 8 hours after the injection.
| | Sample_growth_protocol_ch1 | The Ire1α conditional null or control mice (C57Bl/6J strain background) of 3-months old were used for the experiment.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Mouse 430_2 expression Array. GeneChips were washed and stained according to the standard procedures
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data was anaylysed using D-chip and Genespring software
| | Sample_platform_id | GPL1261
| | Sample_contact_name | wenbo,,xu
| | Sample_contact_email | wenboxu@umich.edu
| | Sample_contact_institute | university of michigan
| | Sample_contact_address | MSR BILD II
| | Sample_contact_city | ANN Arbor
| | Sample_contact_state | MI
| | Sample_contact_zip/postal_code | 48190
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM666nnn/GSM666003/suppl/GSM666003.CEL.gz
| | Sample_series_id | GSE27038
| | Sample_data_row_count | 45101
| | |
|
GSM666004 | GPL1261 |
|
Fe-CRE+Tm, Biological Rep 3
|
mouse liver tissue after ER stress challenge
|
tissue: liver
age: 3-months old
genotype/variation: Ire1α null
strain: C57Bl/6J
agent: tunicamycin
|
Gene expression data from livers of the Ire1α null mice at 8 hours after tunicamycin treatment.
|
| Sample_geo_accession | GSM666004
| | Sample_status | Public on Feb 03 2011
| | Sample_submission_date | Feb 03 2011
| | Sample_last_update_date | Feb 03 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Mice were injected intraperitoneally with TM (2µg/gram body weight) or vehicle (150 µM dextrose), and liver tissue was isolated at 8 hours after the injection.
| | Sample_growth_protocol_ch1 | The Ire1α conditional null or control mice (C57Bl/6J strain background) of 3-months old were used for the experiment.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Mouse 430_2 expression Array. GeneChips were washed and stained according to the standard procedures
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data was anaylysed using D-chip and Genespring software
| | Sample_platform_id | GPL1261
| | Sample_contact_name | wenbo,,xu
| | Sample_contact_email | wenboxu@umich.edu
| | Sample_contact_institute | university of michigan
| | Sample_contact_address | MSR BILD II
| | Sample_contact_city | ANN Arbor
| | Sample_contact_state | MI
| | Sample_contact_zip/postal_code | 48190
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM666nnn/GSM666004/suppl/GSM666004.CEL.gz
| | Sample_series_id | GSE27038
| | Sample_data_row_count | 45101
| | |
|
GSM666005 | GPL1261 |
|
Fe+CRE+, Biological Rep 1
|
mouse liver tissue without ER stress challenge
|
tissue: liver
age: 3-months old
genotype/variation: control
strain: C57Bl/6J
agent: vehicle
|
Gene expression data from livers of the control mice under the non-stressed condition.
|
| Sample_geo_accession | GSM666005
| | Sample_status | Public on Feb 03 2011
| | Sample_submission_date | Feb 03 2011
| | Sample_last_update_date | Feb 03 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Mice were injected intraperitoneally with TM (2µg/gram body weight) or vehicle (150 µM dextrose), and liver tissue was isolated at 8 hours after the injection.
| | Sample_growth_protocol_ch1 | The Ire1α conditional null or control mice (C57Bl/6J strain background) of 3-months old were used for the experiment.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Mouse 430_2 expression Array. GeneChips were washed and stained according to the standard procedures
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data was anaylysed using D-chip and Genespring software
| | Sample_platform_id | GPL1261
| | Sample_contact_name | wenbo,,xu
| | Sample_contact_email | wenboxu@umich.edu
| | Sample_contact_institute | university of michigan
| | Sample_contact_address | MSR BILD II
| | Sample_contact_city | ANN Arbor
| | Sample_contact_state | MI
| | Sample_contact_zip/postal_code | 48190
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM666nnn/GSM666005/suppl/GSM666005.CEL.gz
| | Sample_series_id | GSE27038
| | Sample_data_row_count | 45101
| | |
|
GSM666006 | GPL1261 |
|
Fe+CRE+, Biological Rep 2
|
mouse liver tissue without ER stress challenge
|
tissue: liver
age: 3-months old
genotype/variation: control
strain: C57Bl/6J
agent: vehicle
|
Gene expression data from livers of the control mice under the non-stressed condition.
|
| Sample_geo_accession | GSM666006
| | Sample_status | Public on Feb 03 2011
| | Sample_submission_date | Feb 03 2011
| | Sample_last_update_date | Feb 03 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Mice were injected intraperitoneally with TM (2µg/gram body weight) or vehicle (150 µM dextrose), and liver tissue was isolated at 8 hours after the injection.
| | Sample_growth_protocol_ch1 | The Ire1α conditional null or control mice (C57Bl/6J strain background) of 3-months old were used for the experiment.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Mouse 430_2 expression Array. GeneChips were washed and stained according to the standard procedures
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data was anaylysed using D-chip and Genespring software
| | Sample_platform_id | GPL1261
| | Sample_contact_name | wenbo,,xu
| | Sample_contact_email | wenboxu@umich.edu
| | Sample_contact_institute | university of michigan
| | Sample_contact_address | MSR BILD II
| | Sample_contact_city | ANN Arbor
| | Sample_contact_state | MI
| | Sample_contact_zip/postal_code | 48190
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM666nnn/GSM666006/suppl/GSM666006.CEL.gz
| | Sample_series_id | GSE27038
| | Sample_data_row_count | 45101
| | |
|
GSM666007 | GPL1261 |
|
Fe+CRE+, Biological Rep 3
|
mouse liver tissue without ER stress challenge
|
tissue: liver
age: 3-months old
genotype/variation: control
strain: C57Bl/6J
agent: vehicle
|
Gene expression data from livers of the control mice under the non-stressed condition.
|
| Sample_geo_accession | GSM666007
| | Sample_status | Public on Feb 03 2011
| | Sample_submission_date | Feb 03 2011
| | Sample_last_update_date | Feb 03 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Mice were injected intraperitoneally with TM (2µg/gram body weight) or vehicle (150 µM dextrose), and liver tissue was isolated at 8 hours after the injection.
| | Sample_growth_protocol_ch1 | The Ire1α conditional null or control mice (C57Bl/6J strain background) of 3-months old were used for the experiment.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Mouse 430_2 expression Array. GeneChips were washed and stained according to the standard procedures
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data was anaylysed using D-chip and Genespring software
| | Sample_platform_id | GPL1261
| | Sample_contact_name | wenbo,,xu
| | Sample_contact_email | wenboxu@umich.edu
| | Sample_contact_institute | university of michigan
| | Sample_contact_address | MSR BILD II
| | Sample_contact_city | ANN Arbor
| | Sample_contact_state | MI
| | Sample_contact_zip/postal_code | 48190
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM666nnn/GSM666007/suppl/GSM666007.CEL.gz
| | Sample_series_id | GSE27038
| | Sample_data_row_count | 45101
| | |
|
GSM666008 | GPL1261 |
|
Fe-CRE+, Biological Rep 1
|
mouse liver tissue without ER stress challenge
|
tissue: liver
age: 3-months old
genotype/variation: Ire1α null
strain: C57Bl/6J
agent: vehicle
|
Gene expression data from livers of the Ire1α null mice under the non-stressed condition.
|
| Sample_geo_accession | GSM666008
| | Sample_status | Public on Feb 03 2011
| | Sample_submission_date | Feb 03 2011
| | Sample_last_update_date | Feb 03 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Mice were injected intraperitoneally with TM (2µg/gram body weight) or vehicle (150 µM dextrose), and liver tissue was isolated at 8 hours after the injection.
| | Sample_growth_protocol_ch1 | The Ire1α conditional null or control mice (C57Bl/6J strain background) of 3-months old were used for the experiment.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Mouse 430_2 expression Array. GeneChips were washed and stained according to the standard procedures
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data was anaylysed using D-chip and Genespring software
| | Sample_platform_id | GPL1261
| | Sample_contact_name | wenbo,,xu
| | Sample_contact_email | wenboxu@umich.edu
| | Sample_contact_institute | university of michigan
| | Sample_contact_address | MSR BILD II
| | Sample_contact_city | ANN Arbor
| | Sample_contact_state | MI
| | Sample_contact_zip/postal_code | 48190
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM666nnn/GSM666008/suppl/GSM666008.CEL.gz
| | Sample_series_id | GSE27038
| | Sample_data_row_count | 45101
| | |
|
GSM666009 | GPL1261 |
|
Fe-CRE+, Biological Rep 2
|
mouse liver tissue without ER stress challenge
|
tissue: liver
age: 3-months old
genotype/variation: Ire1α null
strain: C57Bl/6J
agent: vehicle
|
Gene expression data from livers of the Ire1α null mice under the non-stressed condition.
|
| Sample_geo_accession | GSM666009
| | Sample_status | Public on Feb 03 2011
| | Sample_submission_date | Feb 03 2011
| | Sample_last_update_date | Feb 03 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Mice were injected intraperitoneally with TM (2µg/gram body weight) or vehicle (150 µM dextrose), and liver tissue was isolated at 8 hours after the injection.
| | Sample_growth_protocol_ch1 | The Ire1α conditional null or control mice (C57Bl/6J strain background) of 3-months old were used for the experiment.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Mouse 430_2 expression Array. GeneChips were washed and stained according to the standard procedures
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data was anaylysed using D-chip and Genespring software
| | Sample_platform_id | GPL1261
| | Sample_contact_name | wenbo,,xu
| | Sample_contact_email | wenboxu@umich.edu
| | Sample_contact_institute | university of michigan
| | Sample_contact_address | MSR BILD II
| | Sample_contact_city | ANN Arbor
| | Sample_contact_state | MI
| | Sample_contact_zip/postal_code | 48190
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM666nnn/GSM666009/suppl/GSM666009.CEL.gz
| | Sample_series_id | GSE27038
| | Sample_data_row_count | 45101
| | |
|
GSM666010 | GPL1261 |
|
Fe-CRE+, Biological Rep 3
|
mouse liver tissue without ER stress challenge
|
tissue: liver
age: 3-months old
genotype/variation: Ire1α null
strain: C57Bl/6J
agent: vehicle
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Gene expression data from livers of the Ire1α null mice under the non-stressed condition.
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| Sample_geo_accession | GSM666010
| | Sample_status | Public on Feb 03 2011
| | Sample_submission_date | Feb 03 2011
| | Sample_last_update_date | Feb 03 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Mice were injected intraperitoneally with TM (2µg/gram body weight) or vehicle (150 µM dextrose), and liver tissue was isolated at 8 hours after the injection.
| | Sample_growth_protocol_ch1 | The Ire1α conditional null or control mice (C57Bl/6J strain background) of 3-months old were used for the experiment.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Mouse 430_2 expression Array. GeneChips were washed and stained according to the standard procedures
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data was anaylysed using D-chip and Genespring software
| | Sample_platform_id | GPL1261
| | Sample_contact_name | wenbo,,xu
| | Sample_contact_email | wenboxu@umich.edu
| | Sample_contact_institute | university of michigan
| | Sample_contact_address | MSR BILD II
| | Sample_contact_city | ANN Arbor
| | Sample_contact_state | MI
| | Sample_contact_zip/postal_code | 48190
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM666nnn/GSM666010/suppl/GSM666010.CEL.gz
| | Sample_series_id | GSE27038
| | Sample_data_row_count | 45101
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