Search results for the GEO ID: GSE27159  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM671403 | GPL1261 |
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JoMa1_1
|
Parental JoMa1
|
cell line: JoMa1
cell type: neural crest precursor cells
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|
| Sample_geo_accession | GSM671403
| | Sample_status | Public on Apr 30 2012
| | Sample_submission_date | Feb 08 2011
| | Sample_last_update_date | Apr 30 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | JoMa1 cells were grown as described (Maurer et al. Differentiation, 2007 (PMID 17381545)).
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cells were harvested when they reached 80% confluency, and lysed using Trizol. RNA was purified using the QIAGEN RNeasy Mini Kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotin labelling was performed according to the manufacturer's recommendations (Affymetrix).
| | Sample_hyb_protocol | Hybridization to Mouse 430 2.0 arrays was performed according to the manufacturer's recommendations (Affymetrix).
| | Sample_scan_protocol | Scanning of chips was performed using a GeneArray scanner (Agilent).
| | Sample_data_processing | Data were RMA normalized using Genomics Suite 6.5 (Partek).
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Alexander,,Schramm
| | Sample_contact_email | alexander.schramm@uk-essen.de
| | Sample_contact_laboratory | Hematology/Oncology Lab
| | Sample_contact_department | Childrens Hospital
| | Sample_contact_institute | University Hospital Essen
| | Sample_contact_address | Hufelandstr. 55
| | Sample_contact_city | Essen
| | Sample_contact_zip/postal_code | 45122
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM671nnn/GSM671403/suppl/GSM671403.CEL.gz
| | Sample_series_id | GSE27159
| | Sample_data_row_count | 45101
| | |
|
GSM671404 | GPL1261 |
|
JoMa1_2
|
Parental JoMa1
|
cell line: JoMa1
cell type: neural crest precursor cells
|
|
| Sample_geo_accession | GSM671404
| | Sample_status | Public on Apr 30 2012
| | Sample_submission_date | Feb 08 2011
| | Sample_last_update_date | Apr 30 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | JoMa1 cells were grown as described (Maurer et al. Differentiation, 2007 (PMID 17381545)).
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cells were harvested when they reached 80% confluency, and lysed using Trizol. RNA was purified using the QIAGEN RNeasy Mini Kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotin labelling was performed according to the manufacturer's recommendations (Affymetrix).
| | Sample_hyb_protocol | Hybridization to Mouse 430 2.0 arrays was performed according to the manufacturer's recommendations (Affymetrix).
| | Sample_scan_protocol | Scanning of chips was performed using a GeneArray scanner (Agilent).
| | Sample_data_processing | Data were RMA normalized using Genomics Suite 6.5 (Partek).
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Alexander,,Schramm
| | Sample_contact_email | alexander.schramm@uk-essen.de
| | Sample_contact_laboratory | Hematology/Oncology Lab
| | Sample_contact_department | Childrens Hospital
| | Sample_contact_institute | University Hospital Essen
| | Sample_contact_address | Hufelandstr. 55
| | Sample_contact_city | Essen
| | Sample_contact_zip/postal_code | 45122
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM671nnn/GSM671404/suppl/GSM671404.CEL.gz
| | Sample_series_id | GSE27159
| | Sample_data_row_count | 45101
| | |
|
GSM671405 | GPL1261 |
|
JoMa1_3
|
Parental JoMa1
|
cell line: JoMa1
cell type: neural crest precursor cells
|
|
| Sample_geo_accession | GSM671405
| | Sample_status | Public on Apr 30 2012
| | Sample_submission_date | Feb 08 2011
| | Sample_last_update_date | Apr 30 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | JoMa1 cells were grown as described (Maurer et al. Differentiation, 2007 (PMID 17381545)).
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cells were harvested when they reached 80% confluency, and lysed using Trizol. RNA was purified using the QIAGEN RNeasy Mini Kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotin labelling was performed according to the manufacturer's recommendations (Affymetrix).
| | Sample_hyb_protocol | Hybridization to Mouse 430 2.0 arrays was performed according to the manufacturer's recommendations (Affymetrix).
| | Sample_scan_protocol | Scanning of chips was performed using a GeneArray scanner (Agilent).
| | Sample_data_processing | Data were RMA normalized using Genomics Suite 6.5 (Partek).
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Alexander,,Schramm
| | Sample_contact_email | alexander.schramm@uk-essen.de
| | Sample_contact_laboratory | Hematology/Oncology Lab
| | Sample_contact_department | Childrens Hospital
| | Sample_contact_institute | University Hospital Essen
| | Sample_contact_address | Hufelandstr. 55
| | Sample_contact_city | Essen
| | Sample_contact_zip/postal_code | 45122
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM671nnn/GSM671405/suppl/GSM671405.CEL.gz
| | Sample_series_id | GSE27159
| | Sample_data_row_count | 45101
| | |
|
GSM671406 | GPL1261 |
|
JoMa1_GFP
|
GFP-transfected JoMa1
|
cell line: JoMa1
cell type: neural crest precursor cells
transfectant: GFP control
|
|
| Sample_geo_accession | GSM671406
| | Sample_status | Public on Apr 30 2012
| | Sample_submission_date | Feb 08 2011
| | Sample_last_update_date | Apr 30 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | JoMa1 cells were grown as described (Maurer et al. Differentiation, 2007 (PMID 17381545)).
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cells were harvested when they reached 80% confluency, and lysed using Trizol. RNA was purified using the QIAGEN RNeasy Mini Kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotin labelling was performed according to the manufacturer's recommendations (Affymetrix).
| | Sample_hyb_protocol | Hybridization to Mouse 430 2.0 arrays was performed according to the manufacturer's recommendations (Affymetrix).
| | Sample_scan_protocol | Scanning of chips was performed using a GeneArray scanner (Agilent).
| | Sample_data_processing | Data were RMA normalized using Genomics Suite 6.5 (Partek).
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Alexander,,Schramm
| | Sample_contact_email | alexander.schramm@uk-essen.de
| | Sample_contact_laboratory | Hematology/Oncology Lab
| | Sample_contact_department | Childrens Hospital
| | Sample_contact_institute | University Hospital Essen
| | Sample_contact_address | Hufelandstr. 55
| | Sample_contact_city | Essen
| | Sample_contact_zip/postal_code | 45122
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM671nnn/GSM671406/suppl/GSM671406.CEL.gz
| | Sample_series_id | GSE27159
| | Sample_data_row_count | 45101
| | |
|
GSM671407 | GPL1261 |
|
mT3
|
JoMa1-MYCN-induced tumor
|
cell line: derived from JoMa1-MYCN-induced tumor
|
JoMa1 cells transfected with MYCN (JoMa1-MYCN) are tumorigenic in immunocompromised mice. Expression profiles of four independent tumors induced by JoMa1-MYCN were obtained.
|
| Sample_geo_accession | GSM671407
| | Sample_status | Public on Apr 30 2012
| | Sample_submission_date | Feb 08 2011
| | Sample_last_update_date | Apr 30 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | JoMa1 cells were grown as described (Maurer et al. Differentiation, 2007 (PMID 17381545)).
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cells were harvested when they reached 80% confluency, and lysed using Trizol. RNA was purified using the QIAGEN RNeasy Mini Kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotin labelling was performed according to the manufacturer's recommendations (Affymetrix).
| | Sample_hyb_protocol | Hybridization to Mouse 430 2.0 arrays was performed according to the manufacturer's recommendations (Affymetrix).
| | Sample_scan_protocol | Scanning of chips was performed using a GeneArray scanner (Agilent).
| | Sample_data_processing | Data were RMA normalized using Genomics Suite 6.5 (Partek).
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Alexander,,Schramm
| | Sample_contact_email | alexander.schramm@uk-essen.de
| | Sample_contact_laboratory | Hematology/Oncology Lab
| | Sample_contact_department | Childrens Hospital
| | Sample_contact_institute | University Hospital Essen
| | Sample_contact_address | Hufelandstr. 55
| | Sample_contact_city | Essen
| | Sample_contact_zip/postal_code | 45122
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM671nnn/GSM671407/suppl/GSM671407.CEL.gz
| | Sample_series_id | GSE27159
| | Sample_data_row_count | 45101
| | |
|
GSM671408 | GPL1261 |
|
mT4
|
JoMa1-MYCN-induced tumor
|
cell line: derived from JoMa1-MYCN-induced tumor
|
JoMa1 cells transfected with MYCN (JoMa1-MYCN) are tumorigenic in immunocompromised mice. Expression profiles of four independent tumors induced by JoMa1-MYCN were obtained.
|
| Sample_geo_accession | GSM671408
| | Sample_status | Public on Apr 30 2012
| | Sample_submission_date | Feb 08 2011
| | Sample_last_update_date | Apr 30 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | JoMa1 cells were grown as described (Maurer et al. Differentiation, 2007 (PMID 17381545)).
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cells were harvested when they reached 80% confluency, and lysed using Trizol. RNA was purified using the QIAGEN RNeasy Mini Kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotin labelling was performed according to the manufacturer's recommendations (Affymetrix).
| | Sample_hyb_protocol | Hybridization to Mouse 430 2.0 arrays was performed according to the manufacturer's recommendations (Affymetrix).
| | Sample_scan_protocol | Scanning of chips was performed using a GeneArray scanner (Agilent).
| | Sample_data_processing | Data were RMA normalized using Genomics Suite 6.5 (Partek).
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Alexander,,Schramm
| | Sample_contact_email | alexander.schramm@uk-essen.de
| | Sample_contact_laboratory | Hematology/Oncology Lab
| | Sample_contact_department | Childrens Hospital
| | Sample_contact_institute | University Hospital Essen
| | Sample_contact_address | Hufelandstr. 55
| | Sample_contact_city | Essen
| | Sample_contact_zip/postal_code | 45122
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM671nnn/GSM671408/suppl/GSM671408.CEL.gz
| | Sample_series_id | GSE27159
| | Sample_data_row_count | 45101
| | |
|
GSM671409 | GPL1261 |
|
mT5
|
JoMa1-MYCN-induced tumor
|
cell line: derived from JoMa1-MYCN-induced tumor
|
JoMa1 cells transfected with MYCN (JoMa1-MYCN) are tumorigenic in immunocompromised mice. Expression profiles of four independent tumors induced by JoMa1-MYCN were obtained.
|
| Sample_geo_accession | GSM671409
| | Sample_status | Public on Apr 30 2012
| | Sample_submission_date | Feb 08 2011
| | Sample_last_update_date | Apr 30 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | JoMa1 cells were grown as described (Maurer et al. Differentiation, 2007 (PMID 17381545)).
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cells were harvested when they reached 80% confluency, and lysed using Trizol. RNA was purified using the QIAGEN RNeasy Mini Kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotin labelling was performed according to the manufacturer's recommendations (Affymetrix).
| | Sample_hyb_protocol | Hybridization to Mouse 430 2.0 arrays was performed according to the manufacturer's recommendations (Affymetrix).
| | Sample_scan_protocol | Scanning of chips was performed using a GeneArray scanner (Agilent).
| | Sample_data_processing | Data were RMA normalized using Genomics Suite 6.5 (Partek).
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Alexander,,Schramm
| | Sample_contact_email | alexander.schramm@uk-essen.de
| | Sample_contact_laboratory | Hematology/Oncology Lab
| | Sample_contact_department | Childrens Hospital
| | Sample_contact_institute | University Hospital Essen
| | Sample_contact_address | Hufelandstr. 55
| | Sample_contact_city | Essen
| | Sample_contact_zip/postal_code | 45122
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM671nnn/GSM671409/suppl/GSM671409.CEL.gz
| | Sample_series_id | GSE27159
| | Sample_data_row_count | 45101
| | |
|
GSM671410 | GPL1261 |
|
mT6
|
JoMa1-MYCN-induced tumor
|
cell line: derived from JoMa1-MYCN-induced tumor
|
JoMa1 cells transfected with MYCN (JoMa1-MYCN) are tumorigenic in immunocompromised mice. Expression profiles of four independent tumors induced by JoMa1-MYCN were obtained.
|
| Sample_geo_accession | GSM671410
| | Sample_status | Public on Apr 30 2012
| | Sample_submission_date | Feb 08 2011
| | Sample_last_update_date | Apr 30 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | JoMa1 cells were grown as described (Maurer et al. Differentiation, 2007 (PMID 17381545)).
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cells were harvested when they reached 80% confluency, and lysed using Trizol. RNA was purified using the QIAGEN RNeasy Mini Kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotin labelling was performed according to the manufacturer's recommendations (Affymetrix).
| | Sample_hyb_protocol | Hybridization to Mouse 430 2.0 arrays was performed according to the manufacturer's recommendations (Affymetrix).
| | Sample_scan_protocol | Scanning of chips was performed using a GeneArray scanner (Agilent).
| | Sample_data_processing | Data were RMA normalized using Genomics Suite 6.5 (Partek).
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Alexander,,Schramm
| | Sample_contact_email | alexander.schramm@uk-essen.de
| | Sample_contact_laboratory | Hematology/Oncology Lab
| | Sample_contact_department | Childrens Hospital
| | Sample_contact_institute | University Hospital Essen
| | Sample_contact_address | Hufelandstr. 55
| | Sample_contact_city | Essen
| | Sample_contact_zip/postal_code | 45122
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM671nnn/GSM671410/suppl/GSM671410.CEL.gz
| | Sample_series_id | GSE27159
| | Sample_data_row_count | 45101
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