Search results for the GEO ID: GSE27261  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM673862 | GPL1261 |
|
Clint-Cont-1-011411
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P28 testes
|
background strain: mixed (C57BL6/6J and 129)
genotype: Dmrt1 flox/flox with no Cre
gender: male
tissue: testis
age: postnatal day 28 (P28)
|
P28 testes Control, biological rep1.
|
| Sample_geo_accession | GSM673862
| | Sample_status | Public on Jul 29 2011
| | Sample_submission_date | Feb 11 2011
| | Sample_last_update_date | Jul 29 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | Testes were dissected from male P28 (4-week-old) mice.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated from testes using TRIzol reagent (Invitrogen #15596-026).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Labeling was performed by using 5.5 µg of total RNA according to the manufacturer's instructions as described in the GeneChip Expression Analysis Technical Manual (Affymetrix, 2004) with the Affymetrix IVT amplification and labeling kit.
| | Sample_hyb_protocol | 10 µg of purified, fragmented labeled cRNA was hybridized to Affymetrix 430 2.0 microarrays in the Affymetrix 640 hybridization oven according to the manufacturer's instructions as described in the GeneChip Expression Analysis Technical Manual (Affymetrix, 2004).
| | Sample_scan_protocol | Scanning was performed using an Affymetrix GC3000 G7 scanner.
| | Sample_data_processing | CEL files were normalized using the GC-RMA algorithm as implemented in the Genedata Expressionist Analyst Package.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Aaron,,Sarver
| | Sample_contact_laboratory | Biostatistics and Informatics
| | Sample_contact_department | Masonic Cancer Center
| | Sample_contact_institute | University of Minnesota
| | Sample_contact_address | 425 East River Road
| | Sample_contact_city | Minneapolis
| | Sample_contact_state | MN
| | Sample_contact_zip/postal_code | 55455
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM673nnn/GSM673862/suppl/GSM673862.CEL.gz
| | Sample_series_id | GSE27261
| | Sample_data_row_count | 45101
| | |
|
GSM673863 | GPL1261 |
|
Clint-Cont-2-011411
|
P28 testes
|
background strain: mixed (C57BL6/6J and 129)
genotype: Dmrt1 flox/flox with no Cre
gender: male
tissue: testis
age: postnatal day 28 (P28)
|
P28 testes Control, biological rep2.
|
| Sample_geo_accession | GSM673863
| | Sample_status | Public on Jul 29 2011
| | Sample_submission_date | Feb 11 2011
| | Sample_last_update_date | Jul 29 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | Testes were dissected from male P28 (4-week-old) mice.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated from testes using TRIzol reagent (Invitrogen #15596-026).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Labeling was performed by using 5.5 µg of total RNA according to the manufacturer's instructions as described in the GeneChip Expression Analysis Technical Manual (Affymetrix, 2004) with the Affymetrix IVT amplification and labeling kit.
| | Sample_hyb_protocol | 10 µg of purified, fragmented labeled cRNA was hybridized to Affymetrix 430 2.0 microarrays in the Affymetrix 640 hybridization oven according to the manufacturer's instructions as described in the GeneChip Expression Analysis Technical Manual (Affymetrix, 2004).
| | Sample_scan_protocol | Scanning was performed using an Affymetrix GC3000 G7 scanner.
| | Sample_data_processing | CEL files were normalized using the GC-RMA algorithm as implemented in the Genedata Expressionist Analyst Package.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Aaron,,Sarver
| | Sample_contact_laboratory | Biostatistics and Informatics
| | Sample_contact_department | Masonic Cancer Center
| | Sample_contact_institute | University of Minnesota
| | Sample_contact_address | 425 East River Road
| | Sample_contact_city | Minneapolis
| | Sample_contact_state | MN
| | Sample_contact_zip/postal_code | 55455
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM673nnn/GSM673863/suppl/GSM673863.CEL.gz
| | Sample_series_id | GSE27261
| | Sample_data_row_count | 45101
| | |
|
GSM673864 | GPL1261 |
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Clint-Dhh-1-011411
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P28 testes Dhh Cre
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background strain: mixed (C57BL6/6J and 129)
genotype: Dmrt1 flox/flox with Dhh-cre
gender: male
tissue: testis
age: postnatal day 28 (P28)
|
P28 testes wt, Dhh Sertoli cell Dmrt1 KO, biological rep1.
|
| Sample_geo_accession | GSM673864
| | Sample_status | Public on Jul 29 2011
| | Sample_submission_date | Feb 11 2011
| | Sample_last_update_date | Jul 29 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | Testes were dissected from male P28 (4-week-old) mice.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated from testes using TRIzol reagent (Invitrogen #15596-026).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Labeling was performed by using 5.5 µg of total RNA according to the manufacturer's instructions as described in the GeneChip Expression Analysis Technical Manual (Affymetrix, 2004) with the Affymetrix IVT amplification and labeling kit.
| | Sample_hyb_protocol | 10 µg of purified, fragmented labeled cRNA was hybridized to Affymetrix 430 2.0 microarrays in the Affymetrix 640 hybridization oven according to the manufacturer's instructions as described in the GeneChip Expression Analysis Technical Manual (Affymetrix, 2004).
| | Sample_scan_protocol | Scanning was performed using an Affymetrix GC3000 G7 scanner.
| | Sample_data_processing | CEL files were normalized using the GC-RMA algorithm as implemented in the Genedata Expressionist Analyst Package.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Aaron,,Sarver
| | Sample_contact_laboratory | Biostatistics and Informatics
| | Sample_contact_department | Masonic Cancer Center
| | Sample_contact_institute | University of Minnesota
| | Sample_contact_address | 425 East River Road
| | Sample_contact_city | Minneapolis
| | Sample_contact_state | MN
| | Sample_contact_zip/postal_code | 55455
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM673nnn/GSM673864/suppl/GSM673864.CEL.gz
| | Sample_series_id | GSE27261
| | Sample_data_row_count | 45101
| | |
|
GSM673865 | GPL1261 |
|
Clint-Dhh-2-011411
|
P28 testes Dhh Cre
|
background strain: mixed (C57BL6/6J and 129)
genotype: Dmrt1 flox/flox with Dhh-cre
gender: male
tissue: testis
age: postnatal day 28 (P28)
|
P28 testes wt, Dhh Sertoli cell Dmrt1 KO, biological rep2.
|
| Sample_geo_accession | GSM673865
| | Sample_status | Public on Jul 29 2011
| | Sample_submission_date | Feb 11 2011
| | Sample_last_update_date | Jul 29 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | Testes were dissected from male P28 (4-week-old) mice.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated from testes using TRIzol reagent (Invitrogen #15596-026).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Labeling was performed by using 5.5 µg of total RNA according to the manufacturer's instructions as described in the GeneChip Expression Analysis Technical Manual (Affymetrix, 2004) with the Affymetrix IVT amplification and labeling kit.
| | Sample_hyb_protocol | 10 µg of purified, fragmented labeled cRNA was hybridized to Affymetrix 430 2.0 microarrays in the Affymetrix 640 hybridization oven according to the manufacturer's instructions as described in the GeneChip Expression Analysis Technical Manual (Affymetrix, 2004).
| | Sample_scan_protocol | Scanning was performed using an Affymetrix GC3000 G7 scanner.
| | Sample_data_processing | CEL files were normalized using the GC-RMA algorithm as implemented in the Genedata Expressionist Analyst Package.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Aaron,,Sarver
| | Sample_contact_laboratory | Biostatistics and Informatics
| | Sample_contact_department | Masonic Cancer Center
| | Sample_contact_institute | University of Minnesota
| | Sample_contact_address | 425 East River Road
| | Sample_contact_city | Minneapolis
| | Sample_contact_state | MN
| | Sample_contact_zip/postal_code | 55455
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM673nnn/GSM673865/suppl/GSM673865.CEL.gz
| | Sample_series_id | GSE27261
| | Sample_data_row_count | 45101
| | |
|
GSM673866 | GPL1261 |
|
Clint-Sf1-1-011411
|
P28 testes Sf1 Cre
|
background strain: mixed (C57BL6/6J and 129)
genotype: Dmrt1 flox/flox with SF1-cre
gender: male
tissue: testis
age: postnatal day 28 (P28)
|
P28 testes wt, Sf1 Sertoli cell Dmrt1 KO, biological rep1.
|
| Sample_geo_accession | GSM673866
| | Sample_status | Public on Jul 29 2011
| | Sample_submission_date | Feb 11 2011
| | Sample_last_update_date | Jul 29 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | Testes were dissected from male P28 (4-week-old) mice.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated from testes using TRIzol reagent (Invitrogen #15596-026).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Labeling was performed by using 5.5 µg of total RNA according to the manufacturer's instructions as described in the GeneChip Expression Analysis Technical Manual (Affymetrix, 2004) with the Affymetrix IVT amplification and labeling kit.
| | Sample_hyb_protocol | 10 µg of purified, fragmented labeled cRNA was hybridized to Affymetrix 430 2.0 microarrays in the Affymetrix 640 hybridization oven according to the manufacturer's instructions as described in the GeneChip Expression Analysis Technical Manual (Affymetrix, 2004).
| | Sample_scan_protocol | Scanning was performed using an Affymetrix GC3000 G7 scanner.
| | Sample_data_processing | CEL files were normalized using the GC-RMA algorithm as implemented in the Genedata Expressionist Analyst Package.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Aaron,,Sarver
| | Sample_contact_laboratory | Biostatistics and Informatics
| | Sample_contact_department | Masonic Cancer Center
| | Sample_contact_institute | University of Minnesota
| | Sample_contact_address | 425 East River Road
| | Sample_contact_city | Minneapolis
| | Sample_contact_state | MN
| | Sample_contact_zip/postal_code | 55455
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM673nnn/GSM673866/suppl/GSM673866.CEL.gz
| | Sample_series_id | GSE27261
| | Sample_data_row_count | 45101
| | |
|
GSM673867 | GPL1261 |
|
Clint-Sf1-2-011411
|
P28 testes Sf1 Cre
|
background strain: mixed (C57BL6/6J and 129)
genotype: Dmrt1 flox/flox with SF1-cre
gender: male
tissue: testis
age: postnatal day 28 (P28)
|
P28 testes wt, Sf1 Sertoli cell Dmrt1 KO, biological rep2.
|
| Sample_geo_accession | GSM673867
| | Sample_status | Public on Jul 29 2011
| | Sample_submission_date | Feb 11 2011
| | Sample_last_update_date | Jul 29 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | Testes were dissected from male P28 (4-week-old) mice.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated from testes using TRIzol reagent (Invitrogen #15596-026).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Labeling was performed by using 5.5 µg of total RNA according to the manufacturer's instructions as described in the GeneChip Expression Analysis Technical Manual (Affymetrix, 2004) with the Affymetrix IVT amplification and labeling kit.
| | Sample_hyb_protocol | 10 µg of purified, fragmented labeled cRNA was hybridized to Affymetrix 430 2.0 microarrays in the Affymetrix 640 hybridization oven according to the manufacturer's instructions as described in the GeneChip Expression Analysis Technical Manual (Affymetrix, 2004).
| | Sample_scan_protocol | Scanning was performed using an Affymetrix GC3000 G7 scanner.
| | Sample_data_processing | CEL files were normalized using the GC-RMA algorithm as implemented in the Genedata Expressionist Analyst Package.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Aaron,,Sarver
| | Sample_contact_laboratory | Biostatistics and Informatics
| | Sample_contact_department | Masonic Cancer Center
| | Sample_contact_institute | University of Minnesota
| | Sample_contact_address | 425 East River Road
| | Sample_contact_city | Minneapolis
| | Sample_contact_state | MN
| | Sample_contact_zip/postal_code | 55455
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM673nnn/GSM673867/suppl/GSM673867.CEL.gz
| | Sample_series_id | GSE27261
| | Sample_data_row_count | 45101
| | |
|
GSM673868 | GPL1261 |
|
Clint-Sf1-3-011411
|
P28 testes Sf1 Cre
|
background strain: mixed (C57BL6/6J and 129)
genotype: Dmrt1 flox/flox with SF1-cre
gender: male
tissue: testis
age: postnatal day 28 (P28)
|
P28 testes wt, Sf1 Sertoli cell Dmrt1 KO, biological rep3.
|
| Sample_geo_accession | GSM673868
| | Sample_status | Public on Jul 29 2011
| | Sample_submission_date | Feb 11 2011
| | Sample_last_update_date | Jul 29 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | Testes were dissected from male P28 (4-week-old) mice.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated from testes using TRIzol reagent (Invitrogen #15596-026).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Labeling was performed by using 5.5 µg of total RNA according to the manufacturer's instructions as described in the GeneChip Expression Analysis Technical Manual (Affymetrix, 2004) with the Affymetrix IVT amplification and labeling kit.
| | Sample_hyb_protocol | 10 µg of purified, fragmented labeled cRNA was hybridized to Affymetrix 430 2.0 microarrays in the Affymetrix 640 hybridization oven according to the manufacturer's instructions as described in the GeneChip Expression Analysis Technical Manual (Affymetrix, 2004).
| | Sample_scan_protocol | Scanning was performed using an Affymetrix GC3000 G7 scanner.
| | Sample_data_processing | CEL files were normalized using the GC-RMA algorithm as implemented in the Genedata Expressionist Analyst Package.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Aaron,,Sarver
| | Sample_contact_laboratory | Biostatistics and Informatics
| | Sample_contact_department | Masonic Cancer Center
| | Sample_contact_institute | University of Minnesota
| | Sample_contact_address | 425 East River Road
| | Sample_contact_city | Minneapolis
| | Sample_contact_state | MN
| | Sample_contact_zip/postal_code | 55455
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM673nnn/GSM673868/suppl/GSM673868.CEL.gz
| | Sample_series_id | GSE27261
| | Sample_data_row_count | 45101
| | |
|
GSM673869 | GPL1261 |
|
Clint-Sf1-4-011411
|
P28 testes Sf1 Cre
|
background strain: mixed (C57BL6/6J and 129)
genotype: Dmrt1 flox/flox with SF1-cre
gender: male
tissue: testis
age: postnatal day 28 (P28)
|
P28 testes wt, Sf1 Sertoli cell Dmrt1 KO, biological rep4.
|
| Sample_geo_accession | GSM673869
| | Sample_status | Public on Jul 29 2011
| | Sample_submission_date | Feb 11 2011
| | Sample_last_update_date | Jul 29 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | Testes were dissected from male P28 (4-week-old) mice.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated from testes using TRIzol reagent (Invitrogen #15596-026).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Labeling was performed by using 5.5 µg of total RNA according to the manufacturer's instructions as described in the GeneChip Expression Analysis Technical Manual (Affymetrix, 2004) with the Affymetrix IVT amplification and labeling kit.
| | Sample_hyb_protocol | 10 µg of purified, fragmented labeled cRNA was hybridized to Affymetrix 430 2.0 microarrays in the Affymetrix 640 hybridization oven according to the manufacturer's instructions as described in the GeneChip Expression Analysis Technical Manual (Affymetrix, 2004).
| | Sample_scan_protocol | Scanning was performed using an Affymetrix GC3000 G7 scanner.
| | Sample_data_processing | CEL files were normalized using the GC-RMA algorithm as implemented in the Genedata Expressionist Analyst Package.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Aaron,,Sarver
| | Sample_contact_laboratory | Biostatistics and Informatics
| | Sample_contact_department | Masonic Cancer Center
| | Sample_contact_institute | University of Minnesota
| | Sample_contact_address | 425 East River Road
| | Sample_contact_city | Minneapolis
| | Sample_contact_state | MN
| | Sample_contact_zip/postal_code | 55455
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM673nnn/GSM673869/suppl/GSM673869.CEL.gz
| | Sample_series_id | GSE27261
| | Sample_data_row_count | 45101
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