Search results for the GEO ID: GSE27280  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM674577 | GPL570 |
|
Human fibroblast, Pompe desease, Case no. 778
|
Skin biopsy
|
cell type: HF, Pompe disease
|
none
|
| Sample_geo_accession | GSM674577
| | Sample_status | Public on Feb 17 2011
| | Sample_submission_date | Feb 14 2011
| | Sample_last_update_date | Feb 17 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated from cells with TRI Reagent (Molecular Research Center) and treated with DNase I according to manufacturer’s instruction
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | Chips were scanned with Affymetrix GeneChip Scanner 7G
| | Sample_data_processing | Raw data were analyized by Genespring GX, normalized by RMA (Robust Multichip Average) and the weakly expressed signals (<20% of total samples) were excluded
| | Sample_platform_id | GPL570
| | Sample_contact_name | Pin-hsun,,Chen
| | Sample_contact_laboratory | Stem Cell Program, N401b
| | Sample_contact_department | Genomic Research Center
| | Sample_contact_institute | Academia Sinica
| | Sample_contact_address | 128 Academia Road, Section 2, Nankang
| | Sample_contact_city | Taipei
| | Sample_contact_zip/postal_code | 115
| | Sample_contact_country | Taiwan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM674nnn/GSM674577/suppl/GSM674577.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM674nnn/GSM674577/suppl/GSM674577.CHP.gz
| | Sample_series_id | GSE27280
| | Sample_data_row_count | 54675
| | |
|
GSM674578 | GPL570 |
|
Human fibroblast, Pompe desease, Case no. 826
|
Skin biopsy
|
cell type: HF, Pompe disease
|
none
|
| Sample_geo_accession | GSM674578
| | Sample_status | Public on Feb 17 2011
| | Sample_submission_date | Feb 14 2011
| | Sample_last_update_date | Feb 17 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated from cells with TRI Reagent (Molecular Research Center) and treated with DNase I according to manufacturer’s instruction
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | Chips were scanned with Affymetrix GeneChip Scanner 7G
| | Sample_data_processing | Raw data were analyized by Genespring GX, normalized by RMA (Robust Multichip Average) and the weakly expressed signals (<20% of total samples) were excluded
| | Sample_platform_id | GPL570
| | Sample_contact_name | Pin-hsun,,Chen
| | Sample_contact_laboratory | Stem Cell Program, N401b
| | Sample_contact_department | Genomic Research Center
| | Sample_contact_institute | Academia Sinica
| | Sample_contact_address | 128 Academia Road, Section 2, Nankang
| | Sample_contact_city | Taipei
| | Sample_contact_zip/postal_code | 115
| | Sample_contact_country | Taiwan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM674nnn/GSM674578/suppl/GSM674578.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM674nnn/GSM674578/suppl/GSM674578.CHP.gz
| | Sample_series_id | GSE27280
| | Sample_data_row_count | 54675
| | |
|
GSM674579 | GPL570 |
|
PomD-iPSC A10
|
Human iPSC(Pompe desease, Case no.778)-10
|
cell type: PomD-iPSCs
|
None
|
| Sample_geo_accession | GSM674579
| | Sample_status | Public on Feb 17 2011
| | Sample_submission_date | Feb 14 2011
| | Sample_last_update_date | Feb 17 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated from cells with TRI Reagent (Molecular Research Center) and treated with DNase I according to manufacturer’s instruction.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | Chips were scanned with Affymetrix GeneChip Scanner 7G
| | Sample_data_processing | Raw data were analyized by Genespring GX, normalized by RMA (Robust Multichip Average) and the weakly expressed signals (<20% of total samples) were excluded
| | Sample_platform_id | GPL570
| | Sample_contact_name | Pin-hsun,,Chen
| | Sample_contact_laboratory | Stem Cell Program, N401b
| | Sample_contact_department | Genomic Research Center
| | Sample_contact_institute | Academia Sinica
| | Sample_contact_address | 128 Academia Road, Section 2, Nankang
| | Sample_contact_city | Taipei
| | Sample_contact_zip/postal_code | 115
| | Sample_contact_country | Taiwan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM674nnn/GSM674579/suppl/GSM674579.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM674nnn/GSM674579/suppl/GSM674579.CHP.gz
| | Sample_series_id | GSE27280
| | Sample_data_row_count | 54675
| | |
|
GSM674580 | GPL570 |
|
PomD-iPSC A17
|
Human iPSC(Pompe desease, Case no.778)-17
|
cell type: PomD-iPSCs
|
none
|
| Sample_geo_accession | GSM674580
| | Sample_status | Public on Feb 17 2011
| | Sample_submission_date | Feb 14 2011
| | Sample_last_update_date | Feb 17 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated from cells with TRI Reagent (Molecular Research Center) and treated with DNase I according to manufacturer’s instruction
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | Chips were scanned with Affymetrix GeneChip Scanner 7G
| | Sample_data_processing | Raw data were analyized by Genespring GX, normalized by RMA (Robust Multichip Average) and the weakly expressed signals (<20% of total samples) were excluded
| | Sample_platform_id | GPL570
| | Sample_contact_name | Pin-hsun,,Chen
| | Sample_contact_laboratory | Stem Cell Program, N401b
| | Sample_contact_department | Genomic Research Center
| | Sample_contact_institute | Academia Sinica
| | Sample_contact_address | 128 Academia Road, Section 2, Nankang
| | Sample_contact_city | Taipei
| | Sample_contact_zip/postal_code | 115
| | Sample_contact_country | Taiwan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM674nnn/GSM674580/suppl/GSM674580.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM674nnn/GSM674580/suppl/GSM674580.CHP.gz
| | Sample_series_id | GSE27280
| | Sample_data_row_count | 54675
| | |
|
GSM674581 | GPL570 |
|
PomD-iPSC B03
|
Human iPSC(Pompe desease, Case no.826)-03
|
cell type: PomD-iPSCs
|
none
|
| Sample_geo_accession | GSM674581
| | Sample_status | Public on Feb 17 2011
| | Sample_submission_date | Feb 14 2011
| | Sample_last_update_date | Feb 17 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated from cells with TRI Reagent (Molecular Research Center) and treated with DNase I according to manufacturer’s instruction
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | Chips were scanned with Affymetrix GeneChip Scanner 7G
| | Sample_data_processing | Raw data were analyized by Genespring GX, normalized by RMA (Robust Multichip Average) and the weakly expressed signals (<20% of total samples) were excluded
| | Sample_platform_id | GPL570
| | Sample_contact_name | Pin-hsun,,Chen
| | Sample_contact_laboratory | Stem Cell Program, N401b
| | Sample_contact_department | Genomic Research Center
| | Sample_contact_institute | Academia Sinica
| | Sample_contact_address | 128 Academia Road, Section 2, Nankang
| | Sample_contact_city | Taipei
| | Sample_contact_zip/postal_code | 115
| | Sample_contact_country | Taiwan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM674nnn/GSM674581/suppl/GSM674581.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM674nnn/GSM674581/suppl/GSM674581.CHP.gz
| | Sample_series_id | GSE27280
| | Sample_data_row_count | 54675
| | |
|
GSM674582 | GPL570 |
|
PomD-iPSC A25
|
Human iPSC(Pompe desease, Case no.778)-25
|
cell type: PomD-iPSCs
|
None
|
| Sample_geo_accession | GSM674582
| | Sample_status | Public on Feb 17 2011
| | Sample_submission_date | Feb 14 2011
| | Sample_last_update_date | Feb 17 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated from cells with TRI Reagent (Molecular Research Center) and treated with DNase I according to manufacturer’s instruction.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | Chips were scanned with Affymetrix GeneChip Scanner 7G
| | Sample_data_processing | Raw data were analyized by Genespring GX, normalized by RMA (Robust Multichip Average) and the weakly expressed signals (<20% of total samples) were excluded
| | Sample_platform_id | GPL570
| | Sample_contact_name | Pin-hsun,,Chen
| | Sample_contact_laboratory | Stem Cell Program, N401b
| | Sample_contact_department | Genomic Research Center
| | Sample_contact_institute | Academia Sinica
| | Sample_contact_address | 128 Academia Road, Section 2, Nankang
| | Sample_contact_city | Taipei
| | Sample_contact_zip/postal_code | 115
| | Sample_contact_country | Taiwan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM674nnn/GSM674582/suppl/GSM674582.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM674nnn/GSM674582/suppl/GSM674582.CHP.gz
| | Sample_series_id | GSE27280
| | Sample_data_row_count | 54675
| | |
|
GSM674583 | GPL570 |
|
PompD-iPSC-CMLC A17
|
PompD-iPSC A17 cell line derived cardiomyocyte-like cells
|
cell type: PomD-iPSC-CMLC
|
None
|
| Sample_geo_accession | GSM674583
| | Sample_status | Public on Feb 17 2011
| | Sample_submission_date | Feb 14 2011
| | Sample_last_update_date | Feb 17 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated from cells with TRI Reagent (Molecular Research Center) and treated with DNase I according to manufacturer’s instruction.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | Chips were scanned with Affymetrix GeneChip Scanner 7G
| | Sample_data_processing | Raw data were analyized by Genespring GX, normalized by RMA (Robust Multichip Average) and the weakly expressed signals (<20% of total samples) were excluded
| | Sample_platform_id | GPL570
| | Sample_contact_name | Pin-hsun,,Chen
| | Sample_contact_laboratory | Stem Cell Program, N401b
| | Sample_contact_department | Genomic Research Center
| | Sample_contact_institute | Academia Sinica
| | Sample_contact_address | 128 Academia Road, Section 2, Nankang
| | Sample_contact_city | Taipei
| | Sample_contact_zip/postal_code | 115
| | Sample_contact_country | Taiwan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM674nnn/GSM674583/suppl/GSM674583.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM674nnn/GSM674583/suppl/GSM674583.CHP.gz
| | Sample_series_id | GSE27280
| | Sample_data_row_count | 54675
| | |
|
GSM674584 | GPL570 |
|
PompD-iPSC-CMLC A10
|
PompD-iPSC A10 cell line derived cardiomyocyte-like cells
|
cell type: PomD-iPSC-CMLC
|
none
|
| Sample_geo_accession | GSM674584
| | Sample_status | Public on Feb 17 2011
| | Sample_submission_date | Feb 14 2011
| | Sample_last_update_date | Feb 17 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated from cells with TRI Reagent (Molecular Research Center) and treated with DNase I according to manufacturer’s instruction
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | Chips were scanned with Affymetrix GeneChip Scanner 7G
| | Sample_data_processing | Raw data were analyized by Genespring GX, normalized by RMA (Robust Multichip Average) and the weakly expressed signals (<20% of total samples) were excluded
| | Sample_platform_id | GPL570
| | Sample_contact_name | Pin-hsun,,Chen
| | Sample_contact_laboratory | Stem Cell Program, N401b
| | Sample_contact_department | Genomic Research Center
| | Sample_contact_institute | Academia Sinica
| | Sample_contact_address | 128 Academia Road, Section 2, Nankang
| | Sample_contact_city | Taipei
| | Sample_contact_zip/postal_code | 115
| | Sample_contact_country | Taiwan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM674nnn/GSM674584/suppl/GSM674584.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM674nnn/GSM674584/suppl/GSM674584.CHP.gz
| | Sample_series_id | GSE27280
| | Sample_data_row_count | 54675
| | |
|
GSM674585 | GPL570 |
|
HES2-CMLC
|
HES2 cell line derived cardiomyocyte-like cells
|
cell type: HES-CMLC
|
none
|
| Sample_geo_accession | GSM674585
| | Sample_status | Public on Feb 17 2011
| | Sample_submission_date | Feb 14 2011
| | Sample_last_update_date | Feb 17 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated from cells with TRI Reagent (Molecular Research Center) and treated with DNase I according to manufacturer’s instruction
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | Chips were scanned with Affymetrix GeneChip Scanner 7G
| | Sample_data_processing | Raw data were analyized by Genespring GX, normalized by RMA (Robust Multichip Average) and the weakly expressed signals (<20% of total samples) were excluded
| | Sample_platform_id | GPL570
| | Sample_contact_name | Pin-hsun,,Chen
| | Sample_contact_laboratory | Stem Cell Program, N401b
| | Sample_contact_department | Genomic Research Center
| | Sample_contact_institute | Academia Sinica
| | Sample_contact_address | 128 Academia Road, Section 2, Nankang
| | Sample_contact_city | Taipei
| | Sample_contact_zip/postal_code | 115
| | Sample_contact_country | Taiwan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM674nnn/GSM674585/suppl/GSM674585.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM674nnn/GSM674585/suppl/GSM674585.CHP.gz
| | Sample_series_id | GSE27280
| | Sample_data_row_count | 54675
| | |
|
GSM674586 | GPL570 |
|
PompD-iPSC-CMLC B03
|
PompD-iPSC B03 cell line derived cardiomyocyte-like cells
|
cell type: PomD-iPSC-CMLC
|
None
|
| Sample_geo_accession | GSM674586
| | Sample_status | Public on Feb 17 2011
| | Sample_submission_date | Feb 14 2011
| | Sample_last_update_date | Feb 17 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated from cells with TRI Reagent (Molecular Research Center) and treated with DNase I according to manufacturer’s instruction.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | Chips were scanned with Affymetrix GeneChip Scanner 7G
| | Sample_data_processing | Raw data were analyized by Genespring GX, normalized by RMA (Robust Multichip Average) and the weakly expressed signals (<20% of total samples) were excluded
| | Sample_platform_id | GPL570
| | Sample_contact_name | Pin-hsun,,Chen
| | Sample_contact_laboratory | Stem Cell Program, N401b
| | Sample_contact_department | Genomic Research Center
| | Sample_contact_institute | Academia Sinica
| | Sample_contact_address | 128 Academia Road, Section 2, Nankang
| | Sample_contact_city | Taipei
| | Sample_contact_zip/postal_code | 115
| | Sample_contact_country | Taiwan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM674nnn/GSM674586/suppl/GSM674586.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM674nnn/GSM674586/suppl/GSM674586.CHP.gz
| | Sample_series_id | GSE27280
| | Sample_data_row_count | 54675
| | |
|
GSM674603 | GPL570 |
|
HESC1
|
Human embryonic stem cell line, H9
|
cell type: HES
|
None
|
| Sample_geo_accession | GSM674603
| | Sample_status | Public on Feb 17 2011
| | Sample_submission_date | Feb 14 2011
| | Sample_last_update_date | Feb 17 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated from cells with TRI Reagent (Molecular Research Center) and treated with DNase I according to manufacturer’s instruction.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | Chips were scanned with Affymetrix GeneChip Scanner 7G
| | Sample_data_processing | Raw data were analyized by Genespring GX, normalized by RMA (Robust Multichip Average) and the weakly expressed signals (<20% of total samples) were excluded.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Pin-hsun,,Chen
| | Sample_contact_laboratory | Stem Cell Program, N401b
| | Sample_contact_department | Genomic Research Center
| | Sample_contact_institute | Academia Sinica
| | Sample_contact_address | 128 Academia Road, Section 2, Nankang
| | Sample_contact_city | Taipei
| | Sample_contact_zip/postal_code | 115
| | Sample_contact_country | Taiwan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM674nnn/GSM674603/suppl/GSM674603.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM674nnn/GSM674603/suppl/GSM674603.CHP.gz
| | Sample_series_id | GSE27280
| | Sample_data_row_count | 54675
| | |
|
GSM674604 | GPL570 |
|
HESC2
|
Human embryonic stem cell line, NTU1
|
cell type: HES
|
None
|
| Sample_geo_accession | GSM674604
| | Sample_status | Public on Feb 17 2011
| | Sample_submission_date | Feb 14 2011
| | Sample_last_update_date | Feb 17 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated from cells with TRI Reagent (Molecular Research Center) and treated with DNase I according to manufacturer’s instruction.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | Chips were scanned with Affymetrix GeneChip Scanner 7G
| | Sample_data_processing | Raw data were analyized by Genespring GX, normalized by RMA (Robust Multichip Average) and the weakly expressed signals (<20% of total samples) were excluded.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Pin-hsun,,Chen
| | Sample_contact_laboratory | Stem Cell Program, N401b
| | Sample_contact_department | Genomic Research Center
| | Sample_contact_institute | Academia Sinica
| | Sample_contact_address | 128 Academia Road, Section 2, Nankang
| | Sample_contact_city | Taipei
| | Sample_contact_zip/postal_code | 115
| | Sample_contact_country | Taiwan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM674nnn/GSM674604/suppl/GSM674604.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM674nnn/GSM674604/suppl/GSM674604.CHP.gz
| | Sample_series_id | GSE27280
| | Sample_data_row_count | 54675
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