Search results for the GEO ID: GSE27309  |
(Click on the check boxes provided under "Select for analysis", to initiate grouping) |
(Once the selection is made, click on "Add groups" in "Make groups for comparison", to make a group. Scroll down) |
|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM675147 | GPL1261 |
|
BAT_WT_1
|
Brown adipose tissue, WT
|
genotype: WT
tissue: brown adipose
genetic background: 129
|
|
| Sample_geo_accession | GSM675147
| | Sample_status | Public on Mar 15 2011
| | Sample_submission_date | Feb 14 2011
| | Sample_last_update_date | Mar 15 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | No treatment. Samples are from SIRT3 WT or KO littermate mice of approximately 1 year of age on a 129 background.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to manufacturer instructions (Invitrogen). RNA was cleaned using RNeasy MiniKit from Qiagen.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip mouse Genome Array Mouse430_2. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Robust Multi-array Average (RMA) with PM only models as normalization method.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Marcia,C,Haigis
| | Sample_contact_institute | Harvard Medical School
| | Sample_contact_address | 77 Ave Louis Pasteur
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM675nnn/GSM675147/suppl/GSM675147_1484_WT.CEL.gz
| | Sample_series_id | GSE27309
| | Sample_data_row_count | 45101
| | |
|
GSM675148 | GPL1261 |
|
BAT_WT_2
|
Brown adipose tissue, WT
|
genotype: WT
tissue: brown adipose
genetic background: 129
|
|
| Sample_geo_accession | GSM675148
| | Sample_status | Public on Mar 15 2011
| | Sample_submission_date | Feb 14 2011
| | Sample_last_update_date | Mar 15 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | No treatment. Samples are from SIRT3 WT or KO littermate mice of approximately 1 year of age on a 129 background.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to manufacturer instructions (Invitrogen). RNA was cleaned using RNeasy MiniKit from Qiagen.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip mouse Genome Array Mouse430_2. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Robust Multi-array Average (RMA) with PM only models as normalization method.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Marcia,C,Haigis
| | Sample_contact_institute | Harvard Medical School
| | Sample_contact_address | 77 Ave Louis Pasteur
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM675nnn/GSM675148/suppl/GSM675148_1492_WT.CEL.gz
| | Sample_series_id | GSE27309
| | Sample_data_row_count | 45101
| | |
|
GSM675149 | GPL1261 |
|
BAT_WT_3
|
Brown adipose tissue, WT
|
genotype: WT
tissue: brown adipose
genetic background: 129
|
|
| Sample_geo_accession | GSM675149
| | Sample_status | Public on Mar 15 2011
| | Sample_submission_date | Feb 14 2011
| | Sample_last_update_date | Mar 15 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | No treatment. Samples are from SIRT3 WT or KO littermate mice of approximately 1 year of age on a 129 background.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to manufacturer instructions (Invitrogen). RNA was cleaned using RNeasy MiniKit from Qiagen.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip mouse Genome Array Mouse430_2. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Robust Multi-array Average (RMA) with PM only models as normalization method.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Marcia,C,Haigis
| | Sample_contact_institute | Harvard Medical School
| | Sample_contact_address | 77 Ave Louis Pasteur
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM675nnn/GSM675149/suppl/GSM675149_1507_WT.CEL.gz
| | Sample_series_id | GSE27309
| | Sample_data_row_count | 45101
| | |
|
GSM675150 | GPL1261 |
|
BAT_WT_4
|
Brown adipose tissue, WT
|
genotype: WT
tissue: brown adipose
genetic background: 129
|
|
| Sample_geo_accession | GSM675150
| | Sample_status | Public on Mar 15 2011
| | Sample_submission_date | Feb 14 2011
| | Sample_last_update_date | Mar 15 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | No treatment. Samples are from SIRT3 WT or KO littermate mice of approximately 1 year of age on a 129 background.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to manufacturer instructions (Invitrogen). RNA was cleaned using RNeasy MiniKit from Qiagen.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip mouse Genome Array Mouse430_2. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Robust Multi-array Average (RMA) with PM only models as normalization method.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Marcia,C,Haigis
| | Sample_contact_institute | Harvard Medical School
| | Sample_contact_address | 77 Ave Louis Pasteur
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM675nnn/GSM675150/suppl/GSM675150_1540_WT.CEL.gz
| | Sample_series_id | GSE27309
| | Sample_data_row_count | 45101
| | |
|
GSM675151 | GPL1261 |
|
BAT_WT_5
|
Brown adipose tissue, WT
|
genotype: WT
tissue: brown adipose
genetic background: 129
|
|
| Sample_geo_accession | GSM675151
| | Sample_status | Public on Mar 15 2011
| | Sample_submission_date | Feb 14 2011
| | Sample_last_update_date | Mar 15 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | No treatment. Samples are from SIRT3 WT or KO littermate mice of approximately 1 year of age on a 129 background.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to manufacturer instructions (Invitrogen). RNA was cleaned using RNeasy MiniKit from Qiagen.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip mouse Genome Array Mouse430_2. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Robust Multi-array Average (RMA) with PM only models as normalization method.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Marcia,C,Haigis
| | Sample_contact_institute | Harvard Medical School
| | Sample_contact_address | 77 Ave Louis Pasteur
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM675nnn/GSM675151/suppl/GSM675151_1584_WT.CEL.gz
| | Sample_series_id | GSE27309
| | Sample_data_row_count | 45101
| | |
|
GSM675152 | GPL1261 |
|
BAT_KO_1
|
Brown adipose tissue, KO
|
genotype: SIRT3 KO
tissue: brown adipose
genetic background: 129
|
|
| Sample_geo_accession | GSM675152
| | Sample_status | Public on Mar 15 2011
| | Sample_submission_date | Feb 14 2011
| | Sample_last_update_date | Mar 15 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | No treatment. Samples are from SIRT3 WT or KO littermate mice of approximately 1 year of age on a 129 background.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to manufacturer instructions (Invitrogen). RNA was cleaned using RNeasy MiniKit from Qiagen.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip mouse Genome Array Mouse430_2. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Robust Multi-array Average (RMA) with PM only models as normalization method.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Marcia,C,Haigis
| | Sample_contact_institute | Harvard Medical School
| | Sample_contact_address | 77 Ave Louis Pasteur
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM675nnn/GSM675152/suppl/GSM675152_1438_KO.CEL.gz
| | Sample_series_id | GSE27309
| | Sample_data_row_count | 45101
| | |
|
GSM675153 | GPL1261 |
|
BAT_KO_2
|
Brown adipose tissue, KO
|
genotype: SIRT3 KO
tissue: brown adipose
genetic background: 129
|
|
| Sample_geo_accession | GSM675153
| | Sample_status | Public on Mar 15 2011
| | Sample_submission_date | Feb 14 2011
| | Sample_last_update_date | Mar 15 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | No treatment. Samples are from SIRT3 WT or KO littermate mice of approximately 1 year of age on a 129 background.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to manufacturer instructions (Invitrogen). RNA was cleaned using RNeasy MiniKit from Qiagen.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip mouse Genome Array Mouse430_2. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Robust Multi-array Average (RMA) with PM only models as normalization method.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Marcia,C,Haigis
| | Sample_contact_institute | Harvard Medical School
| | Sample_contact_address | 77 Ave Louis Pasteur
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM675nnn/GSM675153/suppl/GSM675153_1444_KO.CEL.gz
| | Sample_series_id | GSE27309
| | Sample_data_row_count | 45101
| | |
|
GSM675154 | GPL1261 |
|
BAT_KO_3
|
Brown adipose tissue, KO
|
genotype: SIRT3 KO
tissue: brown adipose
genetic background: 129
|
|
| Sample_geo_accession | GSM675154
| | Sample_status | Public on Mar 15 2011
| | Sample_submission_date | Feb 14 2011
| | Sample_last_update_date | Mar 15 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | No treatment. Samples are from SIRT3 WT or KO littermate mice of approximately 1 year of age on a 129 background.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to manufacturer instructions (Invitrogen). RNA was cleaned using RNeasy MiniKit from Qiagen.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip mouse Genome Array Mouse430_2. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Robust Multi-array Average (RMA) with PM only models as normalization method.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Marcia,C,Haigis
| | Sample_contact_institute | Harvard Medical School
| | Sample_contact_address | 77 Ave Louis Pasteur
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM675nnn/GSM675154/suppl/GSM675154_1490_KO.CEL.gz
| | Sample_series_id | GSE27309
| | Sample_data_row_count | 45101
| | |
|
GSM675155 | GPL1261 |
|
BAT_KO_4
|
Brown adipose tissue, KO
|
genotype: SIRT3 KO
tissue: brown adipose
genetic background: 129
|
|
| Sample_geo_accession | GSM675155
| | Sample_status | Public on Mar 15 2011
| | Sample_submission_date | Feb 14 2011
| | Sample_last_update_date | Mar 15 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | No treatment. Samples are from SIRT3 WT or KO littermate mice of approximately 1 year of age on a 129 background.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to manufacturer instructions (Invitrogen). RNA was cleaned using RNeasy MiniKit from Qiagen.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip mouse Genome Array Mouse430_2. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Robust Multi-array Average (RMA) with PM only models as normalization method.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Marcia,C,Haigis
| | Sample_contact_institute | Harvard Medical School
| | Sample_contact_address | 77 Ave Louis Pasteur
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM675nnn/GSM675155/suppl/GSM675155_1491_KO.CEL.gz
| | Sample_series_id | GSE27309
| | Sample_data_row_count | 45101
| | |
|
GSM675156 | GPL1261 |
|
BAT_KO_5
|
Brown adipose tissue, KO
|
genotype: SIRT3 KO
tissue: brown adipose
genetic background: 129
|
|
| Sample_geo_accession | GSM675156
| | Sample_status | Public on Mar 15 2011
| | Sample_submission_date | Feb 14 2011
| | Sample_last_update_date | Mar 15 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | No treatment. Samples are from SIRT3 WT or KO littermate mice of approximately 1 year of age on a 129 background.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to manufacturer instructions (Invitrogen). RNA was cleaned using RNeasy MiniKit from Qiagen.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip mouse Genome Array Mouse430_2. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Robust Multi-array Average (RMA) with PM only models as normalization method.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Marcia,C,Haigis
| | Sample_contact_institute | Harvard Medical School
| | Sample_contact_address | 77 Ave Louis Pasteur
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM675nnn/GSM675156/suppl/GSM675156_1539_KO.CEL.gz
| | Sample_series_id | GSE27309
| | Sample_data_row_count | 45101
| | |
|
| |
| |
Make groups for comparisons |
(2 groups will be compared at a time) |
|
| Select GSMs and click on "Add groups" |
Enter the group name here: |
|
|
|
