Search results for the GEO ID: GSE27372  |
(Click on the check boxes provided under "Select for analysis", to initiate grouping) |
(Once the selection is made, click on "Add groups" in "Make groups for comparison", to make a group. Scroll down) |
|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM676980 | GPL570 |
|
HOB-01, replicate 1
|
HOB-01 pre-osteocytes cells, control
|
cell line: HOB-01
cell type: pre-osteocytes cells
treatment: control
|
ctr.1
|
| Sample_geo_accession | GSM676980
| | Sample_status | Public on May 22 2012
| | Sample_submission_date | Feb 16 2011
| | Sample_last_update_date | May 23 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Human pre-osteocytic cell line HOB-01 were detached with EDTA 2mM and washed twice with PBS solution.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Extraction of total RNA was performed by the RNeasy Kit (QIAGEN) according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 micrograms of cRNA were hybridized for 16 hr at 45°C on the GeneChip HG-U133 Plus 2.0 Array. The arrays were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | Arrays were scanned using the GeneChip Scanner 3000 7G.
| | Sample_data_processing | The probe level data were converted to expression values using default GCOS1.1 scaling. Natural-scaled data are provided.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Antonino,,Neri
| | Sample_contact_email | emagene@policlinico.mi.it
| | Sample_contact_phone | +390255033328
| | Sample_contact_department | Department of Clinical Science and Community Health - Hematology 1
| | Sample_contact_institute | University of Milan - Fondazione IRCCS Ospedale Maggiore Policlinico
| | Sample_contact_address | Francesco Sforza, 35
| | Sample_contact_city | MILAN
| | Sample_contact_zip/postal_code | 20122
| | Sample_contact_country | Italy
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM676nnn/GSM676980/suppl/GSM676980.CEL.gz
| | Sample_series_id | GSE27372
| | Sample_data_row_count | 54675
| | |
|
GSM676981 | GPL570 |
|
HOB-01, replicate 2
|
HOB-01 pre-osteocytes cells, control
|
cell line: HOB-01
cell type: pre-osteocytes cells
treatment: control
|
ctr.2
|
| Sample_geo_accession | GSM676981
| | Sample_status | Public on May 22 2012
| | Sample_submission_date | Feb 16 2011
| | Sample_last_update_date | May 23 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Human pre-osteocytic cell line HOB-01 were detached with EDTA 2mM and washed twice with PBS solution.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Extraction of total RNA was performed by the RNeasy Kit (QIAGEN) according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 micrograms of cRNA were hybridized for 16 hr at 45°C on the GeneChip HG-U133 Plus 2.0 Array. The arrays were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | Arrays were scanned using the GeneChip Scanner 3000 7G.
| | Sample_data_processing | The probe level data were converted to expression values using default GCOS1.1 scaling. Natural-scaled data are provided.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Antonino,,Neri
| | Sample_contact_email | emagene@policlinico.mi.it
| | Sample_contact_phone | +390255033328
| | Sample_contact_department | Department of Clinical Science and Community Health - Hematology 1
| | Sample_contact_institute | University of Milan - Fondazione IRCCS Ospedale Maggiore Policlinico
| | Sample_contact_address | Francesco Sforza, 35
| | Sample_contact_city | MILAN
| | Sample_contact_zip/postal_code | 20122
| | Sample_contact_country | Italy
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM676nnn/GSM676981/suppl/GSM676981.CEL.gz
| | Sample_series_id | GSE27372
| | Sample_data_row_count | 54675
| | |
|
GSM676982 | GPL570 |
|
HOB-01, replicate 3
|
HOB-01 pre-osteocytes cells, control
|
cell line: HOB-01
cell type: pre-osteocytes cells
treatment: control
|
ctr.3
|
| Sample_geo_accession | GSM676982
| | Sample_status | Public on May 22 2012
| | Sample_submission_date | Feb 16 2011
| | Sample_last_update_date | May 23 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Human pre-osteocytic cell line HOB-01 were detached with EDTA 2mM and washed twice with PBS solution.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Extraction of total RNA was performed by the RNeasy Kit (QIAGEN) according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 micrograms of cRNA were hybridized for 16 hr at 45°C on the GeneChip HG-U133 Plus 2.0 Array. The arrays were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | Arrays were scanned using the GeneChip Scanner 3000 7G.
| | Sample_data_processing | The probe level data were converted to expression values using default GCOS1.1 scaling. Natural-scaled data are provided.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Antonino,,Neri
| | Sample_contact_email | emagene@policlinico.mi.it
| | Sample_contact_phone | +390255033328
| | Sample_contact_department | Department of Clinical Science and Community Health - Hematology 1
| | Sample_contact_institute | University of Milan - Fondazione IRCCS Ospedale Maggiore Policlinico
| | Sample_contact_address | Francesco Sforza, 35
| | Sample_contact_city | MILAN
| | Sample_contact_zip/postal_code | 20122
| | Sample_contact_country | Italy
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM676nnn/GSM676982/suppl/GSM676982.CEL.gz
| | Sample_series_id | GSE27372
| | Sample_data_row_count | 54675
| | |
|
GSM676983 | GPL570 |
|
HOB-01 transwell JJN3, replicate 1
|
HOB-01 pre-osteocytes cells, transwell JJN3
|
cell line: HOB-01
cell type: pre-osteocytes cells
treatment: co-cultured with the JJN3 human myeloma cell line
|
transwell.JJN3.1
|
| Sample_geo_accession | GSM676983
| | Sample_status | Public on May 22 2012
| | Sample_submission_date | Feb 16 2011
| | Sample_last_update_date | May 23 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Human pre-osteocytic cell line HOB-01 were detached with EDTA 2mM and washed twice with PBS solution.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Extraction of total RNA was performed by the RNeasy Kit (QIAGEN) according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 micrograms of cRNA were hybridized for 16 hr at 45°C on the GeneChip HG-U133 Plus 2.0 Array. The arrays were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | Arrays were scanned using the GeneChip Scanner 3000 7G.
| | Sample_data_processing | The probe level data were converted to expression values using default GCOS1.1 scaling. Natural-scaled data are provided.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Antonino,,Neri
| | Sample_contact_email | emagene@policlinico.mi.it
| | Sample_contact_phone | +390255033328
| | Sample_contact_department | Department of Clinical Science and Community Health - Hematology 1
| | Sample_contact_institute | University of Milan - Fondazione IRCCS Ospedale Maggiore Policlinico
| | Sample_contact_address | Francesco Sforza, 35
| | Sample_contact_city | MILAN
| | Sample_contact_zip/postal_code | 20122
| | Sample_contact_country | Italy
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM676nnn/GSM676983/suppl/GSM676983.CEL.gz
| | Sample_series_id | GSE27372
| | Sample_data_row_count | 54675
| | |
|
GSM676984 | GPL570 |
|
HOB-01 transwell JJN3, replicate 2
|
HOB-01 pre-osteocytes cells, transwell JJN3
|
cell line: HOB-01
cell type: pre-osteocytes cells
treatment: co-cultured with the JJN3 human myeloma cell line
|
transwell.JJN3.2
|
| Sample_geo_accession | GSM676984
| | Sample_status | Public on May 22 2012
| | Sample_submission_date | Feb 16 2011
| | Sample_last_update_date | May 23 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Human pre-osteocytic cell line HOB-01 were detached with EDTA 2mM and washed twice with PBS solution.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Extraction of total RNA was performed by the RNeasy Kit (QIAGEN) according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 micrograms of cRNA were hybridized for 16 hr at 45°C on the GeneChip HG-U133 Plus 2.0 Array. The arrays were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | Arrays were scanned using the GeneChip Scanner 3000 7G.
| | Sample_data_processing | The probe level data were converted to expression values using default GCOS1.1 scaling. Natural-scaled data are provided.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Antonino,,Neri
| | Sample_contact_email | emagene@policlinico.mi.it
| | Sample_contact_phone | +390255033328
| | Sample_contact_department | Department of Clinical Science and Community Health - Hematology 1
| | Sample_contact_institute | University of Milan - Fondazione IRCCS Ospedale Maggiore Policlinico
| | Sample_contact_address | Francesco Sforza, 35
| | Sample_contact_city | MILAN
| | Sample_contact_zip/postal_code | 20122
| | Sample_contact_country | Italy
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM676nnn/GSM676984/suppl/GSM676984.CEL.gz
| | Sample_series_id | GSE27372
| | Sample_data_row_count | 54675
| | |
|
GSM676985 | GPL570 |
|
HOB-01 transwell JJN3, replicate 3
|
HOB-01 pre-osteocytes cells, transwell JJN3
|
cell line: HOB-01
cell type: pre-osteocytes cells
treatment: co-cultured with the JJN3 human myeloma cell line
|
transwell.JJN3.3
|
| Sample_geo_accession | GSM676985
| | Sample_status | Public on May 22 2012
| | Sample_submission_date | Feb 16 2011
| | Sample_last_update_date | May 23 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Human pre-osteocytic cell line HOB-01 were detached with EDTA 2mM and washed twice with PBS solution.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Extraction of total RNA was performed by the RNeasy Kit (QIAGEN) according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 micrograms of cRNA were hybridized for 16 hr at 45°C on the GeneChip HG-U133 Plus 2.0 Array. The arrays were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | Arrays were scanned using the GeneChip Scanner 3000 7G.
| | Sample_data_processing | The probe level data were converted to expression values using default GCOS1.1 scaling. Natural-scaled data are provided.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Antonino,,Neri
| | Sample_contact_email | emagene@policlinico.mi.it
| | Sample_contact_phone | +390255033328
| | Sample_contact_department | Department of Clinical Science and Community Health - Hematology 1
| | Sample_contact_institute | University of Milan - Fondazione IRCCS Ospedale Maggiore Policlinico
| | Sample_contact_address | Francesco Sforza, 35
| | Sample_contact_city | MILAN
| | Sample_contact_zip/postal_code | 20122
| | Sample_contact_country | Italy
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM676nnn/GSM676985/suppl/GSM676985.CEL.gz
| | Sample_series_id | GSE27372
| | Sample_data_row_count | 54675
| | |
|
| |
| |
Make groups for comparisons |
(2 groups will be compared at a time) |
|
| Select GSMs and click on "Add groups" |
Enter the group name here: |
|
|
|
