Search results for the GEO ID: GSE27402  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM677591 | GPL1261 |
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WT CLP LY6D-, biological rep1
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Murine bone marrow from C57bl/6 mice
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tissue: bone marrow
genotype: Wild type
strain: C57bl/6
age: 10-13 weeks old
cell type: FACS sorted LY6D- CLP cells (LIN-FLT3+CD127+)
|
Gene expression data from FACS sorted LY6D- CLP cells (LIN-FLT3+CD127+)
|
| Sample_geo_accession | GSM677591
| | Sample_status | Public on Nov 22 2011
| | Sample_submission_date | Feb 18 2011
| | Sample_last_update_date | Nov 22 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cells (LIN-FLT3+CD127+LY6D- bone marrow) were directly sorted into buffer RLT and RNA prepared using RNeasy Micro (Qiagen) according to manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared according to the standard AffymetrixTM; Small Sample Labelling Protocol v.2, with the exception that the second round of in vitro transcription (IVT) was performed using AffymetrixTM GeneChipTM Expression 3íamplification kit.
| | Sample_hyb_protocol | Following fragmentation, 10 microg of cRNA was hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | Chips were scanned using an Affymetrix GeneChip Scanner 3000. Chip target intensity was arbitrarily scaled to 100 before rendering CHP file
| | Sample_data_processing | Expression values were calculated by RMA express (http://rmaexpress.bmbolstad.com/) using background adjustment and quantile normalization.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Eva,,Welinder
| | Sample_contact_email | ewelinder@gmail.com
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gilman Drive
| | Sample_contact_city | La Jolla
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM677nnn/GSM677591/suppl/GSM677591.CEL.gz
| | Sample_series_id | GSE27402
| | Sample_data_row_count | 45101
| | |
|
GSM677592 | GPL1261 |
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WT CLP LY6D-, biological rep2
|
Murine bone marrow from C57bl/6 mice
|
tissue: bone marrow
genotype: Wild type
strain: C57bl/6
age: 10-13 weeks old
cell type: FACS sorted LY6D- CLP cells (LIN-FLT3+CD127+)
|
Gene expression data from FACS sorted LY6D- CLP cells (LIN-FLT3+CD127+)
|
| Sample_geo_accession | GSM677592
| | Sample_status | Public on Nov 22 2011
| | Sample_submission_date | Feb 18 2011
| | Sample_last_update_date | Nov 22 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cells (LIN-FLT3+CD127+LY6D- bone marrow) were directly sorted into buffer RLT and RNA prepared using RNeasy Micro (Qiagen) according to manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared according to the standard AffymetrixTM; Small Sample Labelling Protocol v.2, with the exception that the second round of in vitro transcription (IVT) was performed using AffymetrixTM GeneChipTM Expression 3íamplification kit.
| | Sample_hyb_protocol | Following fragmentation, 10 microg of cRNA was hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | Chips were scanned using an Affymetrix GeneChip Scanner 3000. Chip target intensity was arbitrarily scaled to 100 before rendering CHP file
| | Sample_data_processing | Expression values were calculated by RMA express (http://rmaexpress.bmbolstad.com/) using background adjustment and quantile normalization.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Eva,,Welinder
| | Sample_contact_email | ewelinder@gmail.com
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gilman Drive
| | Sample_contact_city | La Jolla
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM677nnn/GSM677592/suppl/GSM677592.CEL.gz
| | Sample_series_id | GSE27402
| | Sample_data_row_count | 45101
| | |
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GSM677593 | GPL1261 |
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HEB CLP LY6D-, biological rep1
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Murine bone marrow from C57bl/6 mice
|
tissue: bone marrow
genotype: HEB-KO
strain: C57bl/6
age: 10-13 weeks old
cell type: FACS sorted LY6D- CLP cells (LIN-FLT3+CD127+)
|
Gene expression data from FACS sorted LY6D- CLP cells (LIN-FLT3+CD127+)
|
| Sample_geo_accession | GSM677593
| | Sample_status | Public on Nov 22 2011
| | Sample_submission_date | Feb 18 2011
| | Sample_last_update_date | Nov 22 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cells (LIN-FLT3+CD127+LY6D- bone marrow) were directly sorted into buffer RLT and RNA prepared using RNeasy Micro (Qiagen) according to manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared according to the standard AffymetrixTM; Small Sample Labelling Protocol v.2, with the exception that the second round of in vitro transcription (IVT) was performed using AffymetrixTM GeneChipTM Expression 3íamplification kit.
| | Sample_hyb_protocol | Following fragmentation, 10 microg of cRNA was hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | Chips were scanned using an Affymetrix GeneChip Scanner 3000. Chip target intensity was arbitrarily scaled to 100 before rendering CHP file
| | Sample_data_processing | Expression values were calculated by RMA express (http://rmaexpress.bmbolstad.com/) using background adjustment and quantile normalization.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Eva,,Welinder
| | Sample_contact_email | ewelinder@gmail.com
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gilman Drive
| | Sample_contact_city | La Jolla
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM677nnn/GSM677593/suppl/GSM677593.CEL.gz
| | Sample_series_id | GSE27402
| | Sample_data_row_count | 45101
| | |
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GSM677594 | GPL1261 |
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HEB CLP LY6D-, biological rep2
|
Murine bone marrow from C57bl/6 mice
|
tissue: bone marrow
genotype: HEB-KO
strain: C57bl/6
age: 10-13 weeks old
cell type: FACS sorted LY6D- CLP cells (LIN-FLT3+CD127+)
|
Gene expression data from FACS sorted LY6D- CLP cells (LIN-FLT3+CD127+)
|
| Sample_geo_accession | GSM677594
| | Sample_status | Public on Nov 22 2011
| | Sample_submission_date | Feb 18 2011
| | Sample_last_update_date | Nov 22 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cells (LIN-FLT3+CD127+LY6D- bone marrow) were directly sorted into buffer RLT and RNA prepared using RNeasy Micro (Qiagen) according to manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared according to the standard AffymetrixTM; Small Sample Labelling Protocol v.2, with the exception that the second round of in vitro transcription (IVT) was performed using AffymetrixTM GeneChipTM Expression 3íamplification kit.
| | Sample_hyb_protocol | Following fragmentation, 10 microg of cRNA was hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | Chips were scanned using an Affymetrix GeneChip Scanner 3000. Chip target intensity was arbitrarily scaled to 100 before rendering CHP file
| | Sample_data_processing | Expression values were calculated by RMA express (http://rmaexpress.bmbolstad.com/) using background adjustment and quantile normalization.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Eva,,Welinder
| | Sample_contact_email | ewelinder@gmail.com
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gilman Drive
| | Sample_contact_city | La Jolla
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM677nnn/GSM677594/suppl/GSM677594.CEL.gz
| | Sample_series_id | GSE27402
| | Sample_data_row_count | 45101
| | |
|
GSM677595 | GPL1261 |
|
E2A CLP LY6D-, biological rep1
|
Murine bone marrow from C57bl/6 mice
|
tissue: bone marrow
genotype: E2A-KO
strain: C57bl/6
age: 10-13 weeks old
cell type: FACS sorted LY6D- CLP cells (LIN-FLT3+CD127+)
|
Gene expression data from FACS sorted LY6D- CLP cells (LIN-FLT3+CD127+)
|
| Sample_geo_accession | GSM677595
| | Sample_status | Public on Nov 22 2011
| | Sample_submission_date | Feb 18 2011
| | Sample_last_update_date | Nov 22 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cells (LIN-FLT3+CD127+LY6D- bone marrow) were directly sorted into buffer RLT and RNA prepared using RNeasy Micro (Qiagen) according to manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared according to the standard AffymetrixTM; Small Sample Labelling Protocol v.2, with the exception that the second round of in vitro transcription (IVT) was performed using AffymetrixTM GeneChipTM Expression 3íamplification kit.
| | Sample_hyb_protocol | Following fragmentation, 10 microg of cRNA was hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | Chips were scanned using an Affymetrix GeneChip Scanner 3000. Chip target intensity was arbitrarily scaled to 100 before rendering CHP file
| | Sample_data_processing | Expression values were calculated by RMA express (http://rmaexpress.bmbolstad.com/) using background adjustment and quantile normalization.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Eva,,Welinder
| | Sample_contact_email | ewelinder@gmail.com
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gilman Drive
| | Sample_contact_city | La Jolla
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM677nnn/GSM677595/suppl/GSM677595.CEL.gz
| | Sample_series_id | GSE27402
| | Sample_data_row_count | 45101
| | |
|
GSM677596 | GPL1261 |
|
E2A CLP LY6D-, biological rep2
|
Murine bone marrow from C57bl/6 mice
|
tissue: bone marrow
genotype: E2A-KO
strain: C57bl/6
age: 10-13 weeks old
cell type: FACS sorted LY6D- CLP cells (LIN-FLT3+CD127+)
|
Gene expression data from FACS sorted LY6D- CLP cells (LIN-FLT3+CD127+)
|
| Sample_geo_accession | GSM677596
| | Sample_status | Public on Nov 22 2011
| | Sample_submission_date | Feb 18 2011
| | Sample_last_update_date | Nov 22 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cells (LIN-FLT3+CD127+LY6D- bone marrow) were directly sorted into buffer RLT and RNA prepared using RNeasy Micro (Qiagen) according to manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared according to the standard AffymetrixTM; Small Sample Labelling Protocol v.2, with the exception that the second round of in vitro transcription (IVT) was performed using AffymetrixTM GeneChipTM Expression 3íamplification kit.
| | Sample_hyb_protocol | Following fragmentation, 10 microg of cRNA was hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | Chips were scanned using an Affymetrix GeneChip Scanner 3000. Chip target intensity was arbitrarily scaled to 100 before rendering CHP file
| | Sample_data_processing | Expression values were calculated by RMA express (http://rmaexpress.bmbolstad.com/) using background adjustment and quantile normalization.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Eva,,Welinder
| | Sample_contact_email | ewelinder@gmail.com
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gilman Drive
| | Sample_contact_city | La Jolla
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM677nnn/GSM677596/suppl/GSM677596.CEL.gz
| | Sample_series_id | GSE27402
| | Sample_data_row_count | 45101
| | |
|
GSM677597 | GPL1261 |
|
E2A CLP LY6D-, biological rep3
|
Murine bone marrow from C57bl/6 mice
|
tissue: bone marrow
genotype: E2A-KO
strain: C57bl/6
age: 10-13 weeks old
cell type: FACS sorted LY6D- CLP cells (LIN-FLT3+CD127+)
|
Gene expression data from FACS sorted LY6D- CLP cells (LIN-FLT3+CD127+)
|
| Sample_geo_accession | GSM677597
| | Sample_status | Public on Nov 22 2011
| | Sample_submission_date | Feb 18 2011
| | Sample_last_update_date | Nov 22 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cells (LIN-FLT3+CD127+LY6D- bone marrow) were directly sorted into buffer RLT and RNA prepared using RNeasy Micro (Qiagen) according to manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared according to the standard AffymetrixTM; Small Sample Labelling Protocol v.2, with the exception that the second round of in vitro transcription (IVT) was performed using AffymetrixTM GeneChipTM Expression 3íamplification kit.
| | Sample_hyb_protocol | Following fragmentation, 10 microg of cRNA was hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | Chips were scanned using an Affymetrix GeneChip Scanner 3000. Chip target intensity was arbitrarily scaled to 100 before rendering CHP file
| | Sample_data_processing | Expression values were calculated by RMA express (http://rmaexpress.bmbolstad.com/) using background adjustment and quantile normalization.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Eva,,Welinder
| | Sample_contact_email | ewelinder@gmail.com
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gilman Drive
| | Sample_contact_city | La Jolla
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM677nnn/GSM677597/suppl/GSM677597.CEL.gz
| | Sample_series_id | GSE27402
| | Sample_data_row_count | 45101
| | |
|
GSM677598 | GPL1261 |
|
E2A CLP LY6D-, biological rep4
|
Murine bone marrow from C57bl/6 mice
|
tissue: bone marrow
genotype: E2A-KO
strain: C57bl/6
age: 10-13 weeks old
cell type: FACS sorted LY6D- CLP cells (LIN-FLT3+CD127+)
|
Gene expression data from FACS sorted LY6D- CLP cells (LIN-FLT3+CD127+)
|
| Sample_geo_accession | GSM677598
| | Sample_status | Public on Nov 22 2011
| | Sample_submission_date | Feb 18 2011
| | Sample_last_update_date | Nov 22 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cells (LIN-FLT3+CD127+LY6D- bone marrow) were directly sorted into buffer RLT and RNA prepared using RNeasy Micro (Qiagen) according to manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared according to the standard AffymetrixTM; Small Sample Labelling Protocol v.2, with the exception that the second round of in vitro transcription (IVT) was performed using AffymetrixTM GeneChipTM Expression 3íamplification kit.
| | Sample_hyb_protocol | Following fragmentation, 10 microg of cRNA was hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | Chips were scanned using an Affymetrix GeneChip Scanner 3000. Chip target intensity was arbitrarily scaled to 100 before rendering CHP file
| | Sample_data_processing | Expression values were calculated by RMA express (http://rmaexpress.bmbolstad.com/) using background adjustment and quantile normalization.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Eva,,Welinder
| | Sample_contact_email | ewelinder@gmail.com
| | Sample_contact_institute | UCSD
| | Sample_contact_address | 9500 Gilman Drive
| | Sample_contact_city | La Jolla
| | Sample_contact_zip/postal_code | 92093
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM677nnn/GSM677598/suppl/GSM677598.CEL.gz
| | Sample_series_id | GSE27402
| | Sample_data_row_count | 45101
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