Search results for the GEO ID: GSE27656  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM685061 | GPL1261 |
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wt_ave
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whole ovary from wild type mice (average from previous samples GSM403220 and GSM403221)
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tissue: whole ovary
strain: mixed background (includes C57BL/6)
genotype: wild type
age: 26 days
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gene expression data
|
| Sample_geo_accession | GSM685061
| | Sample_status | Public on Sep 20 2011
| | Sample_submission_date | Mar 03 2011
| | Sample_last_update_date | Sep 20 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Animals were treated in accordance with the NIH Guide for the Care and Use of Laboratory Animals, as approved by the Animal Care and Use Committee at Baylor College of Medicine.
| | Sample_growth_protocol_ch1 | Animals were housed under a 16-h light/8-h dark schedule in the Center for Comparative Medicine at Baylor College of Medicine and provided food and water ad libitum.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extraction by RNeasy Mini Kit (Qiagen, Valencia, CA)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA
| | Sample_hyb_protocol | cRNA were hybridized on GeneChip Mouse Genome 430 2.0 Array using Hybridization Oven 640. The GeneChip® Fluidics Station 450 automates the delivery, timing and temperature control of reagents for staining and washing of the probe arrays.
| | Sample_scan_protocol | GeneChips were scanned using GeneArray™ Scanner 3000 and quantified with Affymetrix GCOS 1.4.
| | Sample_data_processing | The data were analyzed using affy package from Bioconductor version 1.8 with RMA method.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Zhilin,,Liu
| | Sample_contact_email | zhilinl@bcm.tmc.edu
| | Sample_contact_phone | 7137986259
| | Sample_contact_laboratory | Dr. JoAnne S. Richards
| | Sample_contact_department | Molecular and Cellular Biology
| | Sample_contact_institute | Baylor College of Medicine
| | Sample_contact_address | One Baylor Plaza
| | Sample_contact_city | Houston
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 77030
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM685nnn/GSM685061/suppl/GSM685061_GSM403220.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM685nnn/GSM685061/suppl/GSM685061_GSM403221.CEL.gz
| | Sample_relation | Reanalysis of: GSM403220
| | Sample_relation | Reanalysis of: GSM403221
| | Sample_series_id | GSE27656
| | Sample_data_row_count | 45101
| | |
|
GSM685061 | GPL1261 |
|
wt_ave
|
whole ovary from wild type mice (average from previous samples GSM403220 and GSM403221)
|
tissue: whole ovary
strain: mixed background (includes C57BL/6)
genotype: wild type
age: 26 days
|
gene expression data
|
| Sample_geo_accession | GSM685061
| | Sample_status | Public on Sep 20 2011
| | Sample_submission_date | Mar 03 2011
| | Sample_last_update_date | Sep 20 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Animals were treated in accordance with the NIH Guide for the Care and Use of Laboratory Animals, as approved by the Animal Care and Use Committee at Baylor College of Medicine.
| | Sample_growth_protocol_ch1 | Animals were housed under a 16-h light/8-h dark schedule in the Center for Comparative Medicine at Baylor College of Medicine and provided food and water ad libitum.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extraction by RNeasy Mini Kit (Qiagen, Valencia, CA)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA
| | Sample_hyb_protocol | cRNA were hybridized on GeneChip Mouse Genome 430 2.0 Array using Hybridization Oven 640. The GeneChip® Fluidics Station 450 automates the delivery, timing and temperature control of reagents for staining and washing of the probe arrays.
| | Sample_scan_protocol | GeneChips were scanned using GeneArray™ Scanner 3000 and quantified with Affymetrix GCOS 1.4.
| | Sample_data_processing | The data were analyzed using affy package from Bioconductor version 1.8 with RMA method.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Zhilin,,Liu
| | Sample_contact_email | zhilinl@bcm.tmc.edu
| | Sample_contact_phone | 7137986259
| | Sample_contact_laboratory | Dr. JoAnne S. Richards
| | Sample_contact_department | Molecular and Cellular Biology
| | Sample_contact_institute | Baylor College of Medicine
| | Sample_contact_address | One Baylor Plaza
| | Sample_contact_city | Houston
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 77030
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM685nnn/GSM685061/suppl/GSM685061_GSM403220.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM685nnn/GSM685061/suppl/GSM685061_GSM403221.CEL.gz
| | Sample_relation | Reanalysis of: GSM403220
| | Sample_relation | Reanalysis of: GSM403221
| | Sample_series_id | GSE27656
| | Sample_data_row_count | 45101
| | |
|
GSM685062 | GPL1261 |
|
Ctnnb1_OV_1
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whole ovary from beta-Catenin constitutively active mutant
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tissue: whole ovary
strain: mixed background (includes C57BL/6)
genotype: Ctnnb1 tm1Mmt /Ctnnb1 tm1Mmt; Tg(CYP19A1-cre)1jri/+ (Ctnnb1;C-cre)
age: 4 weeks
|
gene expression data
|
| Sample_geo_accession | GSM685062
| | Sample_status | Public on Sep 20 2011
| | Sample_submission_date | Mar 03 2011
| | Sample_last_update_date | Sep 20 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Animals were treated in accordance with the NIH Guide for the Care and Use of Laboratory Animals, as approved by the Animal Care and Use Committee at Baylor College of Medicine.
| | Sample_growth_protocol_ch1 | Animals were housed under a 16-h light/8-h dark schedule in the Center for Comparative Medicine at Baylor College of Medicine and provided food and water ad libitum.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extraction by RNeasy Mini Kit (Qiagen, Valencia, CA)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA
| | Sample_hyb_protocol | cRNA were hybridized on GeneChip Mouse Genome 430 2.0 Array using Hybridization Oven 640. The GeneChip® Fluidics Station 450 automates the delivery, timing and temperature control of reagents for staining and washing of the probe arrays.
| | Sample_scan_protocol | GeneChips were scanned using GeneArray™ Scanner 3000 and quantified with Affymetrix GCOS 1.4.
| | Sample_data_processing | The data were analyzed using affy package from Bioconductor version 1.8 with RMA method.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Zhilin,,Liu
| | Sample_contact_email | zhilinl@bcm.tmc.edu
| | Sample_contact_phone | 7137986259
| | Sample_contact_laboratory | Dr. JoAnne S. Richards
| | Sample_contact_department | Molecular and Cellular Biology
| | Sample_contact_institute | Baylor College of Medicine
| | Sample_contact_address | One Baylor Plaza
| | Sample_contact_city | Houston
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 77030
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM685nnn/GSM685062/suppl/GSM685062_bCat.cel.gz
| | Sample_series_id | GSE27656
| | Sample_data_row_count | 45101
| | |
|
GSM685063 | GPL1261 |
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Ctnnb1_Pten_1
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whole ovary from beta-Catenin;Pten double mutant
|
tissue: whole ovary
strain: mixed background (includes C57BL/6)
genotype: Ptentm1Hwu/ Ptentm1Hwu; Ctnnb1 tm1Mmt /Ctnnb1 tm1Mmt; Tg(CYP19A1-cre)1jri/+ (Ctnnb1;Pten;C-cre)
age: 4 weeks
|
gene expression data
|
| Sample_geo_accession | GSM685063
| | Sample_status | Public on Sep 20 2011
| | Sample_submission_date | Mar 03 2011
| | Sample_last_update_date | Sep 20 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Animals were treated in accordance with the NIH Guide for the Care and Use of Laboratory Animals, as approved by the Animal Care and Use Committee at Baylor College of Medicine.
| | Sample_growth_protocol_ch1 | Animals were housed under a 16-h light/8-h dark schedule in the Center for Comparative Medicine at Baylor College of Medicine and provided food and water ad libitum.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extraction by RNeasy Mini Kit (Qiagen, Valencia, CA)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA
| | Sample_hyb_protocol | cRNA were hybridized on GeneChip Mouse Genome 430 2.0 Array using Hybridization Oven 640. The GeneChip® Fluidics Station 450 automates the delivery, timing and temperature control of reagents for staining and washing of the probe arrays.
| | Sample_scan_protocol | GeneChips were scanned using GeneArray™ Scanner 3000 and quantified with Affymetrix GCOS 1.4.
| | Sample_data_processing | The data were analyzed using affy package from Bioconductor version 1.8 with RMA method.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Zhilin,,Liu
| | Sample_contact_email | zhilinl@bcm.tmc.edu
| | Sample_contact_phone | 7137986259
| | Sample_contact_laboratory | Dr. JoAnne S. Richards
| | Sample_contact_department | Molecular and Cellular Biology
| | Sample_contact_institute | Baylor College of Medicine
| | Sample_contact_address | One Baylor Plaza
| | Sample_contact_city | Houston
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 77030
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM685nnn/GSM685063/suppl/GSM685063_bCat_Pten.cel.gz
| | Sample_series_id | GSE27656
| | Sample_data_row_count | 45101
| | |
|
GSM685064 | GPL1261 |
|
Ctnnb1_Kras_1
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whole ovary from beta-Catenin;Kras(G12D) double mutant
|
tissue: whole ovary
strain: mixed background (includes C57BL/6)
genotype: Krastm4Tyj/ Krastm4Tyj ; Ctnnb1 tm1Mmt /Ctnnb1 tm1Mmt; Tg(CYP19A1-cre)1jri/+ (Ctnnb1;Kras;C-cre)
age: 4 weeks
|
gene expression data
|
| Sample_geo_accession | GSM685064
| | Sample_status | Public on Sep 20 2011
| | Sample_submission_date | Mar 03 2011
| | Sample_last_update_date | Sep 20 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Animals were treated in accordance with the NIH Guide for the Care and Use of Laboratory Animals, as approved by the Animal Care and Use Committee at Baylor College of Medicine.
| | Sample_growth_protocol_ch1 | Animals were housed under a 16-h light/8-h dark schedule in the Center for Comparative Medicine at Baylor College of Medicine and provided food and water ad libitum.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extraction by RNeasy Mini Kit (Qiagen, Valencia, CA)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA
| | Sample_hyb_protocol | cRNA were hybridized on GeneChip Mouse Genome 430 2.0 Array using Hybridization Oven 640. The GeneChip® Fluidics Station 450 automates the delivery, timing and temperature control of reagents for staining and washing of the probe arrays.
| | Sample_scan_protocol | GeneChips were scanned using GeneArray™ Scanner 3000 and quantified with Affymetrix GCOS 1.4.
| | Sample_data_processing | The data were analyzed using affy package from Bioconductor version 1.8 with RMA method.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Zhilin,,Liu
| | Sample_contact_email | zhilinl@bcm.tmc.edu
| | Sample_contact_phone | 7137986259
| | Sample_contact_laboratory | Dr. JoAnne S. Richards
| | Sample_contact_department | Molecular and Cellular Biology
| | Sample_contact_institute | Baylor College of Medicine
| | Sample_contact_address | One Baylor Plaza
| | Sample_contact_city | Houston
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 77030
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM685nnn/GSM685064/suppl/GSM685064_bCat_Kras.cel.gz
| | Sample_series_id | GSE27656
| | Sample_data_row_count | 45101
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