Result

Search results for the GEO ID: GSE27713

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GSM ID

GPL ID

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Title

Source name

Description

Characteristics

GSM686185

GPL1261

miR122-WT-27

miR122-WT

background strain: B6/129 genotype/variation: WT tissue: Liver age: 2 Month

Sample_geo_accession	GSM686185
Sample_status	Public on Aug 07 2012
Sample_submission_date	Mar 07 2011
Sample_last_update_date	Aug 07 2012
Sample_type	RNA
Sample_channel_count	1
Sample_organism_ch1	Mus musculus
Sample_taxid_ch1	10090
Sample_molecule_ch1	total RNA
Sample_extract_protocol_ch1	Super RNApure (Geneisis Biotech Inc, Taiwan) was used to extract total RNA from the frozen liver samples.
Sample_label_ch1	biotin
Sample_label_protocol_ch1	Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
Sample_hyb_protocol	Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
Sample_scan_protocol	GeneChips were scanned using an Affymetrix GeneChip scanner 3000.
Sample_data_processing	The resulting image data was captured and converted to digital output using GeneChip Operating Software v.1.4.0.036. The absolute results (*.chp) from the different experiments (probe arrays of the same type) that were scaled to the same target signal using the All Probe Sets scaling option (scaling factor, 500) may be directly compared (Parameter: Alpha1=0.05, Alpha2=0.065, Tau=0.015). Gene expression was quantified by robust multi-array analysis (RMA) using the Genomic Suite software from Partek.
Sample_platform_id	GPL1261
Sample_contact_name	Ann-Ping,,Tsou
Sample_contact_email	aptsou@ym.edu.tw
Sample_contact_phone	886-2-28267155
Sample_contact_fax	886-2-28264092
Sample_contact_department	Inst. Biotechnology in Medicine
Sample_contact_institute	National Yang-Ming University
Sample_contact_address	155, Li-Nong St., Sec.2
Sample_contact_city	Taipei
Sample_contact_zip/postal_code	112
Sample_contact_country	Taiwan
Sample_supplementary_file	ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM686nnn/GSM686185/suppl/GSM686185.CEL.gz
Sample_supplementary_file	ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM686nnn/GSM686185/suppl/GSM686185.CHP.gz
Sample_series_id	GSE27713
Sample_data_row_count	45101

GSM686186

GPL1261

miR122-WT-103

miR122-WT

background strain: B6/129 genotype/variation: WT tissue: Liver age: 2 Month

Sample_geo_accession	GSM686186
Sample_status	Public on Aug 07 2012
Sample_submission_date	Mar 07 2011
Sample_last_update_date	Aug 07 2012
Sample_type	RNA
Sample_channel_count	1
Sample_organism_ch1	Mus musculus
Sample_taxid_ch1	10090
Sample_molecule_ch1	total RNA
Sample_extract_protocol_ch1	Super RNApure (Geneisis Biotech Inc, Taiwan) was used to extract total RNA from the frozen liver samples.
Sample_label_ch1	biotin
Sample_label_protocol_ch1	Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
Sample_hyb_protocol	Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
Sample_scan_protocol	GeneChips were scanned using an Affymetrix GeneChip scanner 3000.
Sample_data_processing	The resulting image data was captured and converted to digital output using GeneChip Operating Software v.1.4.0.036. The absolute results (*.chp) from the different experiments (probe arrays of the same type) that were scaled to the same target signal using the All Probe Sets scaling option (scaling factor, 500) may be directly compared (Parameter: Alpha1=0.05, Alpha2=0.065, Tau=0.015). Gene expression was quantified by robust multi-array analysis (RMA) using the Genomic Suite software from Partek.
Sample_platform_id	GPL1261
Sample_contact_name	Ann-Ping,,Tsou
Sample_contact_email	aptsou@ym.edu.tw
Sample_contact_phone	886-2-28267155
Sample_contact_fax	886-2-28264092
Sample_contact_department	Inst. Biotechnology in Medicine
Sample_contact_institute	National Yang-Ming University
Sample_contact_address	155, Li-Nong St., Sec.2
Sample_contact_city	Taipei
Sample_contact_zip/postal_code	112
Sample_contact_country	Taiwan
Sample_supplementary_file	ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM686nnn/GSM686186/suppl/GSM686186.CEL.gz
Sample_supplementary_file	ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM686nnn/GSM686186/suppl/GSM686186.CHP.gz
Sample_series_id	GSE27713
Sample_data_row_count	45101

GSM686187

GPL1261

miR122-WT-104

miR122-WT

background strain: B6/129 genotype/variation: WT tissue: Liver age: 2 Month

Sample_geo_accession	GSM686187
Sample_status	Public on Aug 07 2012
Sample_submission_date	Mar 07 2011
Sample_last_update_date	Aug 07 2012
Sample_type	RNA
Sample_channel_count	1
Sample_organism_ch1	Mus musculus
Sample_taxid_ch1	10090
Sample_molecule_ch1	total RNA
Sample_extract_protocol_ch1	Super RNApure (Geneisis Biotech Inc, Taiwan) was used to extract total RNA from the frozen liver samples.
Sample_label_ch1	biotin
Sample_label_protocol_ch1	Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
Sample_hyb_protocol	Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
Sample_scan_protocol	GeneChips were scanned using an Affymetrix GeneChip scanner 3000.
Sample_data_processing	The resulting image data was captured and converted to digital output using GeneChip Operating Software v.1.4.0.036. The absolute results (*.chp) from the different experiments (probe arrays of the same type) that were scaled to the same target signal using the All Probe Sets scaling option (scaling factor, 500) may be directly compared (Parameter: Alpha1=0.05, Alpha2=0.065, Tau=0.015). Gene expression was quantified by robust multi-array analysis (RMA) using the Genomic Suite software from Partek.
Sample_platform_id	GPL1261
Sample_contact_name	Ann-Ping,,Tsou
Sample_contact_email	aptsou@ym.edu.tw
Sample_contact_phone	886-2-28267155
Sample_contact_fax	886-2-28264092
Sample_contact_department	Inst. Biotechnology in Medicine
Sample_contact_institute	National Yang-Ming University
Sample_contact_address	155, Li-Nong St., Sec.2
Sample_contact_city	Taipei
Sample_contact_zip/postal_code	112
Sample_contact_country	Taiwan
Sample_supplementary_file	ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM686nnn/GSM686187/suppl/GSM686187.CEL.gz
Sample_supplementary_file	ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM686nnn/GSM686187/suppl/GSM686187.CHP.gz
Sample_series_id	GSE27713
Sample_data_row_count	45101

GSM686188

GPL1261

miR122-KO-03

miR122-KO

background strain: B6/129 genotype/variation: mir-122 knockout tissue: Liver age: 2 Month

Sample_geo_accession	GSM686188
Sample_status	Public on Aug 07 2012
Sample_submission_date	Mar 07 2011
Sample_last_update_date	Aug 07 2012
Sample_type	RNA
Sample_channel_count	1
Sample_organism_ch1	Mus musculus
Sample_taxid_ch1	10090
Sample_molecule_ch1	total RNA
Sample_extract_protocol_ch1	Super RNApure (Geneisis Biotech Inc, Taiwan) was used to extract total RNA from the frozen liver samples.
Sample_label_ch1	biotin
Sample_label_protocol_ch1	Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
Sample_hyb_protocol	Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
Sample_scan_protocol	GeneChips were scanned using an Affymetrix GeneChip scanner 3000.
Sample_data_processing	The resulting image data was captured and converted to digital output using GeneChip Operating Software v.1.4.0.036. The absolute results (*.chp) from the different experiments (probe arrays of the same type) that were scaled to the same target signal using the All Probe Sets scaling option (scaling factor, 500) may be directly compared (Parameter: Alpha1=0.05, Alpha2=0.065, Tau=0.015). Gene expression was quantified by robust multi-array analysis (RMA) using the Genomic Suite software from Partek.
Sample_platform_id	GPL1261
Sample_contact_name	Ann-Ping,,Tsou
Sample_contact_email	aptsou@ym.edu.tw
Sample_contact_phone	886-2-28267155
Sample_contact_fax	886-2-28264092
Sample_contact_department	Inst. Biotechnology in Medicine
Sample_contact_institute	National Yang-Ming University
Sample_contact_address	155, Li-Nong St., Sec.2
Sample_contact_city	Taipei
Sample_contact_zip/postal_code	112
Sample_contact_country	Taiwan
Sample_supplementary_file	ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM686nnn/GSM686188/suppl/GSM686188.CEL.gz
Sample_supplementary_file	ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM686nnn/GSM686188/suppl/GSM686188.CHP.gz
Sample_series_id	GSE27713
Sample_data_row_count	45101

GSM686189

GPL1261

miR122-KO-90

miR122-KO

background strain: B6/129 genotype/variation: mir-122 knockout tissue: Liver age: 2 Month

Sample_geo_accession	GSM686189
Sample_status	Public on Aug 07 2012
Sample_submission_date	Mar 07 2011
Sample_last_update_date	Aug 07 2012
Sample_type	RNA
Sample_channel_count	1
Sample_organism_ch1	Mus musculus
Sample_taxid_ch1	10090
Sample_molecule_ch1	total RNA
Sample_extract_protocol_ch1	Super RNApure (Geneisis Biotech Inc, Taiwan) was used to extract total RNA from the frozen liver samples.
Sample_label_ch1	biotin
Sample_label_protocol_ch1	Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
Sample_hyb_protocol	Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
Sample_scan_protocol	GeneChips were scanned using an Affymetrix GeneChip scanner 3000.
Sample_data_processing	The resulting image data was captured and converted to digital output using GeneChip Operating Software v.1.4.0.036. The absolute results (*.chp) from the different experiments (probe arrays of the same type) that were scaled to the same target signal using the All Probe Sets scaling option (scaling factor, 500) may be directly compared (Parameter: Alpha1=0.05, Alpha2=0.065, Tau=0.015). Gene expression was quantified by robust multi-array analysis (RMA) using the Genomic Suite software from Partek.
Sample_platform_id	GPL1261
Sample_contact_name	Ann-Ping,,Tsou
Sample_contact_email	aptsou@ym.edu.tw
Sample_contact_phone	886-2-28267155
Sample_contact_fax	886-2-28264092
Sample_contact_department	Inst. Biotechnology in Medicine
Sample_contact_institute	National Yang-Ming University
Sample_contact_address	155, Li-Nong St., Sec.2
Sample_contact_city	Taipei
Sample_contact_zip/postal_code	112
Sample_contact_country	Taiwan
Sample_supplementary_file	ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM686nnn/GSM686189/suppl/GSM686189.CEL.gz
Sample_supplementary_file	ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM686nnn/GSM686189/suppl/GSM686189.CHP.gz
Sample_series_id	GSE27713
Sample_data_row_count	45101

GSM686190

GPL1261

miR122-KO-91

miR122-KO

background strain: B6/129 genotype/variation: mir-122 knockout tissue: Liver age: 2 Month

Sample_geo_accession	GSM686190
Sample_status	Public on Aug 07 2012
Sample_submission_date	Mar 07 2011
Sample_last_update_date	Aug 07 2012
Sample_type	RNA
Sample_channel_count	1
Sample_organism_ch1	Mus musculus
Sample_taxid_ch1	10090
Sample_molecule_ch1	total RNA
Sample_extract_protocol_ch1	Super RNApure (Geneisis Biotech Inc, Taiwan) was used to extract total RNA from the frozen liver samples.
Sample_label_ch1	biotin
Sample_label_protocol_ch1	Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
Sample_hyb_protocol	Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
Sample_scan_protocol	GeneChips were scanned using an Affymetrix GeneChip scanner 3000.
Sample_data_processing	The resulting image data was captured and converted to digital output using GeneChip Operating Software v.1.4.0.036. The absolute results (*.chp) from the different experiments (probe arrays of the same type) that were scaled to the same target signal using the All Probe Sets scaling option (scaling factor, 500) may be directly compared (Parameter: Alpha1=0.05, Alpha2=0.065, Tau=0.015). Gene expression was quantified by robust multi-array analysis (RMA) using the Genomic Suite software from Partek.
Sample_platform_id	GPL1261
Sample_contact_name	Ann-Ping,,Tsou
Sample_contact_email	aptsou@ym.edu.tw
Sample_contact_phone	886-2-28267155
Sample_contact_fax	886-2-28264092
Sample_contact_department	Inst. Biotechnology in Medicine
Sample_contact_institute	National Yang-Ming University
Sample_contact_address	155, Li-Nong St., Sec.2
Sample_contact_city	Taipei
Sample_contact_zip/postal_code	112
Sample_contact_country	Taiwan
Sample_supplementary_file	ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM686nnn/GSM686190/suppl/GSM686190.CEL.gz
Sample_supplementary_file	ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM686nnn/GSM686190/suppl/GSM686190.CHP.gz
Sample_series_id	GSE27713
Sample_data_row_count	45101

GSM686191

GPL1261

miR122-KO-94

miR122-KO

background strain: B6/129 genotype/variation: mir-122 knockout tissue: Liver age: 2 Month

Sample_geo_accession	GSM686191
Sample_status	Public on Aug 07 2012
Sample_submission_date	Mar 07 2011
Sample_last_update_date	Aug 07 2012
Sample_type	RNA
Sample_channel_count	1
Sample_organism_ch1	Mus musculus
Sample_taxid_ch1	10090
Sample_molecule_ch1	total RNA
Sample_extract_protocol_ch1	Super RNApure (Geneisis Biotech Inc, Taiwan) was used to extract total RNA from the frozen liver samples.
Sample_label_ch1	biotin
Sample_label_protocol_ch1	Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
Sample_hyb_protocol	Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
Sample_scan_protocol	GeneChips were scanned using an Affymetrix GeneChip scanner 3000.
Sample_data_processing	The resulting image data was captured and converted to digital output using GeneChip Operating Software v.1.4.0.036. The absolute results (*.chp) from the different experiments (probe arrays of the same type) that were scaled to the same target signal using the All Probe Sets scaling option (scaling factor, 500) may be directly compared (Parameter: Alpha1=0.05, Alpha2=0.065, Tau=0.015). Gene expression was quantified by robust multi-array analysis (RMA) using the Genomic Suite software from Partek.
Sample_platform_id	GPL1261
Sample_contact_name	Ann-Ping,,Tsou
Sample_contact_email	aptsou@ym.edu.tw
Sample_contact_phone	886-2-28267155
Sample_contact_fax	886-2-28264092
Sample_contact_department	Inst. Biotechnology in Medicine
Sample_contact_institute	National Yang-Ming University
Sample_contact_address	155, Li-Nong St., Sec.2
Sample_contact_city	Taipei
Sample_contact_zip/postal_code	112
Sample_contact_country	Taiwan
Sample_supplementary_file	ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM686nnn/GSM686191/suppl/GSM686191.CEL.gz
Sample_supplementary_file	ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM686nnn/GSM686191/suppl/GSM686191.CHP.gz
Sample_series_id	GSE27713
Sample_data_row_count	45101

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