Search results for the GEO ID: GSE27717  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM686327 | GPL1261 |
|
KrasTgfbr2-/- mouse with lung tumor no.1
|
KrasTgfbr2-/- lung tumor, 7 weeks
|
tissue: lung tumor
genotype/variation: KrasTgfbr2-/-
|
Gene expression data from KrasTgfbr2-/- lung tumor, 7 weeks
|
| Sample_geo_accession | GSM686327
| | Sample_status | Public on Sep 15 2011
| | Sample_submission_date | Mar 07 2011
| | Sample_last_update_date | Sep 15 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using Rneasy minikit ; Qiagen, Valencia, CA
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was generated by the modified Eberwine protocol
| | Sample_hyb_protocol | cRNA was hybridized to the Affymetrix(Santa Clara,CA) 430 2.0 arrays
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | Array data were normalized using the RMA algorithm with R/Bioconductor as implemented in BRB-Array Tools V4.1. To exclude genes with minimal variation across the specimens, the data were filtered to remove genes with variance of log ratios for each gene < 75 percentile, thus leaving 11,275 genes for analysis.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Charles,A,Powell
| | Sample_contact_email | charles.powell@mssm.edu
| | Sample_contact_fax | 212-876-5519
| | Sample_contact_department | MEDICINE/PULMONARY
| | Sample_contact_institute | Mount Sinai School of Medicine
| | Sample_contact_address | One Gustave Levy Place, Box 1232
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10029
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM686nnn/GSM686327/suppl/GSM686327.CEL.gz
| | Sample_series_id | GSE27717
| | Sample_series_id | GSE27719
| | Sample_data_row_count | 45101
| | |
|
GSM686328 | GPL1261 |
|
KrasTgfbr2 wt mouse with lung tumor no.10
|
KrasTgfbr2 wt lung tumor,7weeks
|
tissue: lung tumor
genotype/variation: KrasTgfbr2 wt
|
Gene expression data from KrasTgfbr2 wt lung tumor, 7 weeks
|
| Sample_geo_accession | GSM686328
| | Sample_status | Public on Sep 15 2011
| | Sample_submission_date | Mar 07 2011
| | Sample_last_update_date | Sep 15 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using Rneasy minikit ; Qiagen, Valencia, CA
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was generated by the modified Eberwine protocol
| | Sample_hyb_protocol | cRNA was hybridized to the Affymetrix(Santa Clara,CA) 430 2.0 arrays
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | Array data were normalized using the RMA algorithm with R/Bioconductor as implemented in BRB-Array Tools V4.1. To exclude genes with minimal variation across the specimens, the data were filtered to remove genes with variance of log ratios for each gene < 75 percentile, thus leaving 11,275 genes for analysis.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Charles,A,Powell
| | Sample_contact_email | charles.powell@mssm.edu
| | Sample_contact_fax | 212-876-5519
| | Sample_contact_department | MEDICINE/PULMONARY
| | Sample_contact_institute | Mount Sinai School of Medicine
| | Sample_contact_address | One Gustave Levy Place, Box 1232
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10029
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM686nnn/GSM686328/suppl/GSM686328.CEL.gz
| | Sample_series_id | GSE27717
| | Sample_series_id | GSE27719
| | Sample_data_row_count | 45101
| | |
|
GSM686329 | GPL1261 |
|
KrasTgfbr2 wt mouse with lung tumor no.15
|
KrasTgfbr2 wt lung tumor,7weeks
|
tissue: lung tumor
genotype/variation: KrasTgfbr2 wt
|
Gene expression data from KrasTgfbr2 wt lung tumor, 7 weeks
|
| Sample_geo_accession | GSM686329
| | Sample_status | Public on Sep 15 2011
| | Sample_submission_date | Mar 07 2011
| | Sample_last_update_date | Sep 15 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using Rneasy minikit ; Qiagen, Valencia, CA
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was generated by the modified Eberwine protocol
| | Sample_hyb_protocol | cRNA was hybridized to the Affymetrix(Santa Clara,CA) 430 2.0 arrays
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | Array data were normalized using the RMA algorithm with R/Bioconductor as implemented in BRB-Array Tools V4.1. To exclude genes with minimal variation across the specimens, the data were filtered to remove genes with variance of log ratios for each gene < 75 percentile, thus leaving 11,275 genes for analysis.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Charles,A,Powell
| | Sample_contact_email | charles.powell@mssm.edu
| | Sample_contact_fax | 212-876-5519
| | Sample_contact_department | MEDICINE/PULMONARY
| | Sample_contact_institute | Mount Sinai School of Medicine
| | Sample_contact_address | One Gustave Levy Place, Box 1232
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10029
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM686nnn/GSM686329/suppl/GSM686329.CEL.gz
| | Sample_series_id | GSE27717
| | Sample_series_id | GSE27719
| | Sample_data_row_count | 45101
| | |
|
GSM686330 | GPL1261 |
|
KrasTgfbr2 wt mouse with lung tumor no.11
|
KrasTgfbr2 wt lung tumor,7weeks
|
tissue: lung tumor
genotype/variation: KrasTgfbr2 wt
|
Gene expression data from KrasTgfbr2 wt lung tumor, 7 weeks
|
| Sample_geo_accession | GSM686330
| | Sample_status | Public on Sep 15 2011
| | Sample_submission_date | Mar 07 2011
| | Sample_last_update_date | Sep 15 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using Rneasy minikit ; Qiagen, Valencia, CA
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was generated by the modified Eberwine protocol
| | Sample_hyb_protocol | cRNA was hybridized to the Affymetrix(Santa Clara,CA) 430 2.0 arrays
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | Array data were normalized using the RMA algorithm with R/Bioconductor as implemented in BRB-Array Tools V4.1. To exclude genes with minimal variation across the specimens, the data were filtered to remove genes with variance of log ratios for each gene < 75 percentile, thus leaving 11,275 genes for analysis.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Charles,A,Powell
| | Sample_contact_email | charles.powell@mssm.edu
| | Sample_contact_fax | 212-876-5519
| | Sample_contact_department | MEDICINE/PULMONARY
| | Sample_contact_institute | Mount Sinai School of Medicine
| | Sample_contact_address | One Gustave Levy Place, Box 1232
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10029
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM686nnn/GSM686330/suppl/GSM686330.CEL.gz
| | Sample_series_id | GSE27717
| | Sample_series_id | GSE27719
| | Sample_data_row_count | 45101
| | |
|
GSM686331 | GPL1261 |
|
KrasTgfbr2 wt mouse with lung tumor no.12
|
KrasTgfbr2 wt lung tumor,7weeks
|
tissue: lung tumor
genotype/variation: KrasTgfbr2 wt
|
Gene expression data from KrasTgfbr2 wt lung tumor, 7 weeks
|
| Sample_geo_accession | GSM686331
| | Sample_status | Public on Sep 15 2011
| | Sample_submission_date | Mar 07 2011
| | Sample_last_update_date | Sep 15 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using Rneasy minikit ; Qiagen, Valencia, CA
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was generated by the modified Eberwine protocol
| | Sample_hyb_protocol | cRNA was hybridized to the Affymetrix(Santa Clara,CA) 430 2.0 arrays
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | Array data were normalized using the RMA algorithm with R/Bioconductor as implemented in BRB-Array Tools V4.1. To exclude genes with minimal variation across the specimens, the data were filtered to remove genes with variance of log ratios for each gene < 75 percentile, thus leaving 11,275 genes for analysis.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Charles,A,Powell
| | Sample_contact_email | charles.powell@mssm.edu
| | Sample_contact_fax | 212-876-5519
| | Sample_contact_department | MEDICINE/PULMONARY
| | Sample_contact_institute | Mount Sinai School of Medicine
| | Sample_contact_address | One Gustave Levy Place, Box 1232
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10029
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM686nnn/GSM686331/suppl/GSM686331.CEL.gz
| | Sample_series_id | GSE27717
| | Sample_series_id | GSE27719
| | Sample_data_row_count | 45101
| | |
|
GSM686332 | GPL1261 |
|
KrasTgfbr2 wt mouse with lung tumor no.14
|
KrasTgfbr2 wt lung tumor,7weeks
|
tissue: lung tumor
genotype/variation: KrasTgfbr2 wt
|
Gene expression data from KrasTgfbr2 wt lung tumor, 7 weeks
|
| Sample_geo_accession | GSM686332
| | Sample_status | Public on Sep 15 2011
| | Sample_submission_date | Mar 07 2011
| | Sample_last_update_date | Sep 15 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using Rneasy minikit ; Qiagen, Valencia, CA
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was generated by the modified Eberwine protocol
| | Sample_hyb_protocol | cRNA was hybridized to the Affymetrix(Santa Clara,CA) 430 2.0 arrays
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | Array data were normalized using the RMA algorithm with R/Bioconductor as implemented in BRB-Array Tools V4.1. To exclude genes with minimal variation across the specimens, the data were filtered to remove genes with variance of log ratios for each gene < 75 percentile, thus leaving 11,275 genes for analysis.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Charles,A,Powell
| | Sample_contact_email | charles.powell@mssm.edu
| | Sample_contact_fax | 212-876-5519
| | Sample_contact_department | MEDICINE/PULMONARY
| | Sample_contact_institute | Mount Sinai School of Medicine
| | Sample_contact_address | One Gustave Levy Place, Box 1232
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10029
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM686nnn/GSM686332/suppl/GSM686332.CEL.gz
| | Sample_series_id | GSE27717
| | Sample_series_id | GSE27719
| | Sample_data_row_count | 45101
| | |
|
GSM686333 | GPL1261 |
|
KrasTgfbr2 wt mouse with lung tumor no.13
|
KrasTgfbr2 wt lung tumor,7weeks
|
tissue: lung tumor
genotype/variation: KrasTgfbr2 wt
|
Gene expression data from KrasTgfbr2 wt lung tumor, 7 weeks
|
| Sample_geo_accession | GSM686333
| | Sample_status | Public on Sep 15 2011
| | Sample_submission_date | Mar 07 2011
| | Sample_last_update_date | Sep 15 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using Rneasy minikit ; Qiagen, Valencia, CA
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was generated by the modified Eberwine protocol
| | Sample_hyb_protocol | cRNA was hybridized to the Affymetrix(Santa Clara,CA) 430 2.0 arrays
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | Array data were normalized using the RMA algorithm with R/Bioconductor as implemented in BRB-Array Tools V4.1. To exclude genes with minimal variation across the specimens, the data were filtered to remove genes with variance of log ratios for each gene < 75 percentile, thus leaving 11,275 genes for analysis.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Charles,A,Powell
| | Sample_contact_email | charles.powell@mssm.edu
| | Sample_contact_fax | 212-876-5519
| | Sample_contact_department | MEDICINE/PULMONARY
| | Sample_contact_institute | Mount Sinai School of Medicine
| | Sample_contact_address | One Gustave Levy Place, Box 1232
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10029
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM686nnn/GSM686333/suppl/GSM686333.CEL.gz
| | Sample_series_id | GSE27717
| | Sample_series_id | GSE27719
| | Sample_data_row_count | 45101
| | |
|
GSM686334 | GPL1261 |
|
KrasTgfbr2-/- mouse with lung tumor no.3
|
KrasTgfbr2-/- lung tumor, 7 weeks
|
tissue: lung tumor
genotype/variation: KrasTgfbr2-/-
|
Gene expression data from KrasTgfbr2-/- lung tumor, 7 weeks
|
| Sample_geo_accession | GSM686334
| | Sample_status | Public on Sep 15 2011
| | Sample_submission_date | Mar 07 2011
| | Sample_last_update_date | Sep 15 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using Rneasy minikit ; Qiagen, Valencia, CA
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was generated by the modified Eberwine protocol
| | Sample_hyb_protocol | cRNA was hybridized to the Affymetrix(Santa Clara,CA) 430 2.0 arrays
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | Array data were normalized using the RMA algorithm with R/Bioconductor as implemented in BRB-Array Tools V4.1. To exclude genes with minimal variation across the specimens, the data were filtered to remove genes with variance of log ratios for each gene < 75 percentile, thus leaving 11,275 genes for analysis.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Charles,A,Powell
| | Sample_contact_email | charles.powell@mssm.edu
| | Sample_contact_fax | 212-876-5519
| | Sample_contact_department | MEDICINE/PULMONARY
| | Sample_contact_institute | Mount Sinai School of Medicine
| | Sample_contact_address | One Gustave Levy Place, Box 1232
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10029
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM686nnn/GSM686334/suppl/GSM686334.CEL.gz
| | Sample_series_id | GSE27717
| | Sample_series_id | GSE27719
| | Sample_data_row_count | 45101
| | |
|
GSM686335 | GPL1261 |
|
KrasTgfbr2-/- mouse with lung tumor no.2
|
KrasTgfbr2-/- lung tumor, 7 weeks
|
tissue: lung tumor
genotype/variation: KrasTgfbr2-/-
|
Gene expression data from KrasTgfbr2-/- lung tumor, 7 weeks
|
| Sample_geo_accession | GSM686335
| | Sample_status | Public on Sep 15 2011
| | Sample_submission_date | Mar 07 2011
| | Sample_last_update_date | Sep 15 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using Rneasy minikit ; Qiagen, Valencia, CA
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was generated by the modified Eberwine protocol
| | Sample_hyb_protocol | cRNA was hybridized to the Affymetrix(Santa Clara,CA) 430 2.0 arrays
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | Array data were normalized using the RMA algorithm with R/Bioconductor as implemented in BRB-Array Tools V4.1. To exclude genes with minimal variation across the specimens, the data were filtered to remove genes with variance of log ratios for each gene < 75 percentile, thus leaving 11,275 genes for analysis.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Charles,A,Powell
| | Sample_contact_email | charles.powell@mssm.edu
| | Sample_contact_fax | 212-876-5519
| | Sample_contact_department | MEDICINE/PULMONARY
| | Sample_contact_institute | Mount Sinai School of Medicine
| | Sample_contact_address | One Gustave Levy Place, Box 1232
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10029
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM686nnn/GSM686335/suppl/GSM686335.CEL.gz
| | Sample_series_id | GSE27717
| | Sample_series_id | GSE27719
| | Sample_data_row_count | 45101
| | |
|
GSM686336 | GPL1261 |
|
KrasTgfbr2-/- mouse with lung tumor no.5
|
KrasTgfbr2-/- lung tumor, 7 weeks
|
tissue: lung tumor
genotype/variation: KrasTgfbr2-/-
|
Gene expression data from KrasTgfbr2-/- lung tumor, 7 weeks
|
| Sample_geo_accession | GSM686336
| | Sample_status | Public on Sep 15 2011
| | Sample_submission_date | Mar 07 2011
| | Sample_last_update_date | Sep 15 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using Rneasy minikit ; Qiagen, Valencia, CA
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was generated by the modified Eberwine protocol
| | Sample_hyb_protocol | cRNA was hybridized to the Affymetrix(Santa Clara,CA) 430 2.0 arrays
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | Array data were normalized using the RMA algorithm with R/Bioconductor as implemented in BRB-Array Tools V4.1. To exclude genes with minimal variation across the specimens, the data were filtered to remove genes with variance of log ratios for each gene < 75 percentile, thus leaving 11,275 genes for analysis.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Charles,A,Powell
| | Sample_contact_email | charles.powell@mssm.edu
| | Sample_contact_fax | 212-876-5519
| | Sample_contact_department | MEDICINE/PULMONARY
| | Sample_contact_institute | Mount Sinai School of Medicine
| | Sample_contact_address | One Gustave Levy Place, Box 1232
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10029
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM686nnn/GSM686336/suppl/GSM686336.CEL.gz
| | Sample_series_id | GSE27717
| | Sample_series_id | GSE27719
| | Sample_data_row_count | 45101
| | |
|
GSM686337 | GPL1261 |
|
KrasTgfbr2-/- mouse with lung tumor no.4
|
KrasTgfbr2-/- lung tumor, 7 weeks
|
tissue: lung tumor
genotype/variation: KrasTgfbr2-/-
|
Gene expression data from KrasTgfbr2-/- lung tumor, 7 weeks
|
| Sample_geo_accession | GSM686337
| | Sample_status | Public on Sep 15 2011
| | Sample_submission_date | Mar 07 2011
| | Sample_last_update_date | Sep 15 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using Rneasy minikit ; Qiagen, Valencia, CA
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was generated by the modified Eberwine protocol
| | Sample_hyb_protocol | cRNA was hybridized to the Affymetrix(Santa Clara,CA) 430 2.0 arrays
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | Array data were normalized using the RMA algorithm with R/Bioconductor as implemented in BRB-Array Tools V4.1. To exclude genes with minimal variation across the specimens, the data were filtered to remove genes with variance of log ratios for each gene < 75 percentile, thus leaving 11,275 genes for analysis.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Charles,A,Powell
| | Sample_contact_email | charles.powell@mssm.edu
| | Sample_contact_fax | 212-876-5519
| | Sample_contact_department | MEDICINE/PULMONARY
| | Sample_contact_institute | Mount Sinai School of Medicine
| | Sample_contact_address | One Gustave Levy Place, Box 1232
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10029
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM686nnn/GSM686337/suppl/GSM686337.CEL.gz
| | Sample_series_id | GSE27717
| | Sample_series_id | GSE27719
| | Sample_data_row_count | 45101
| | |
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