Search results for the GEO ID: GSE27887  |
(Click on the check boxes provided under "Select for analysis", to initiate grouping) |
(Once the selection is made, click on "Add groups" in "Make groups for comparison", to make a group. Scroll down) |
|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM688738 | GPL570 |
|
P7, POST, ANL non-lesional
|
P7, POST, ANL
|
treatment: NB-UVB
patient: P7
time: post-treatment
tissue: non-lesional skin
scorad: 0
|
|
| Sample_geo_accession | GSM688738
| | Sample_status | Public on Jul 01 2011
| | Sample_submission_date | Mar 10 2011
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen RNeasy Kit protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | standard GeneChip Affymetrix protocol
| | Sample_hyb_protocol | standard GeneChip Affymetrix protocol
| | Sample_scan_protocol | Hewlett–Packard Gene Array Scanner
| | Sample_data_processing | GCRMA (using gcrma package from R/Bioconductor). Each platform was preprocess separately, then merged. An extra quantile normalization was needed to normalized across platforms.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Mayte,,Suarez-Farinas
| | Sample_contact_email | farinam@rockefeller.edu
| | Sample_contact_institute | Rockefeller University
| | Sample_contact_address | 1230 York ave
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10075
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM688nnn/GSM688738/suppl/GSM688738_1_HGU133_plus_2.0_Irma_022510.CEL.gz
| | Sample_series_id | GSE27887
| | Sample_data_row_count | 54675
| | |
|
GSM688739 | GPL570 |
|
P7, POST, AL lesional
|
P7, POST, AL
|
treatment: NB-UVB
patient: P7
time: post-treatment
tissue: lesional skin
scorad: 0
|
|
| Sample_geo_accession | GSM688739
| | Sample_status | Public on Jul 01 2011
| | Sample_submission_date | Mar 10 2011
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen RNeasy Kit protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | standard GeneChip Affymetrix protocol
| | Sample_hyb_protocol | standard GeneChip Affymetrix protocol
| | Sample_scan_protocol | Hewlett–Packard Gene Array Scanner
| | Sample_data_processing | GCRMA (using gcrma package from R/Bioconductor). Each platform was preprocess separately, then merged. An extra quantile normalization was needed to normalized across platforms.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Mayte,,Suarez-Farinas
| | Sample_contact_email | farinam@rockefeller.edu
| | Sample_contact_institute | Rockefeller University
| | Sample_contact_address | 1230 York ave
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10075
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM688nnn/GSM688739/suppl/GSM688739_2_HGU133_plus_2.0_Irma_022510.CEL.gz
| | Sample_series_id | GSE27887
| | Sample_data_row_count | 54675
| | |
|
GSM688740 | GPL570 |
|
P1, POST, ANL non-lesional
|
P1, POST, ANL
|
treatment: NB-UVB
patient: P1
time: post-treatment
tissue: non-lesional skin
scorad: 0
|
|
| Sample_geo_accession | GSM688740
| | Sample_status | Public on Jul 01 2011
| | Sample_submission_date | Mar 10 2011
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen RNeasy Kit protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | standard GeneChip Affymetrix protocol
| | Sample_hyb_protocol | standard GeneChip Affymetrix protocol
| | Sample_scan_protocol | Hewlett–Packard Gene Array Scanner
| | Sample_data_processing | GCRMA (using gcrma package from R/Bioconductor). Each platform was preprocess separately, then merged. An extra quantile normalization was needed to normalized across platforms.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Mayte,,Suarez-Farinas
| | Sample_contact_email | farinam@rockefeller.edu
| | Sample_contact_institute | Rockefeller University
| | Sample_contact_address | 1230 York ave
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10075
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM688nnn/GSM688740/suppl/GSM688740_5_HGU133_plus_2.0_Irma_022510.CEL.gz
| | Sample_series_id | GSE27887
| | Sample_data_row_count | 54675
| | |
|
GSM688741 | GPL570 |
|
P1, POST, AL lesional
|
P1, POST, AL
|
treatment: NB-UVB
patient: P1
time: post-treatment
tissue: lesional skin
scorad: 0
|
|
| Sample_geo_accession | GSM688741
| | Sample_status | Public on Jul 01 2011
| | Sample_submission_date | Mar 10 2011
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen RNeasy Kit protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | standard GeneChip Affymetrix protocol
| | Sample_hyb_protocol | standard GeneChip Affymetrix protocol
| | Sample_scan_protocol | Hewlett–Packard Gene Array Scanner
| | Sample_data_processing | GCRMA (using gcrma package from R/Bioconductor). Each platform was preprocess separately, then merged. An extra quantile normalization was needed to normalized across platforms.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Mayte,,Suarez-Farinas
| | Sample_contact_email | farinam@rockefeller.edu
| | Sample_contact_institute | Rockefeller University
| | Sample_contact_address | 1230 York ave
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10075
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM688nnn/GSM688741/suppl/GSM688741_6_HGU133_plus_2.0_Irma_022510.CEL.gz
| | Sample_series_id | GSE27887
| | Sample_data_row_count | 54675
| | |
|
GSM688742 | GPL570 |
|
P10, POST, ANL non-lesional
|
P10, POST, ANL
|
treatment: NB-UVB
patient: P10
time: post-treatment
tissue: non-lesional skin
scorad: 0
|
|
| Sample_geo_accession | GSM688742
| | Sample_status | Public on Jul 01 2011
| | Sample_submission_date | Mar 10 2011
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen RNeasy Kit protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | standard GeneChip Affymetrix protocol
| | Sample_hyb_protocol | standard GeneChip Affymetrix protocol
| | Sample_scan_protocol | Hewlett–Packard Gene Array Scanner
| | Sample_data_processing | GCRMA (using gcrma package from R/Bioconductor). Each platform was preprocess separately, then merged. An extra quantile normalization was needed to normalized across platforms.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Mayte,,Suarez-Farinas
| | Sample_contact_email | farinam@rockefeller.edu
| | Sample_contact_institute | Rockefeller University
| | Sample_contact_address | 1230 York ave
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10075
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM688nnn/GSM688742/suppl/GSM688742_7_HGU133_plus_2.0_Irma_022510.CEL.gz
| | Sample_series_id | GSE27887
| | Sample_data_row_count | 54675
| | |
|
GSM688743 | GPL570 |
|
P10, POST, AL lesional
|
P10, POST, AL
|
treatment: NB-UVB
patient: P10
time: post-treatment
tissue: lesional skin
scorad: 0
|
|
| Sample_geo_accession | GSM688743
| | Sample_status | Public on Jul 01 2011
| | Sample_submission_date | Mar 10 2011
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen RNeasy Kit protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | standard GeneChip Affymetrix protocol
| | Sample_hyb_protocol | standard GeneChip Affymetrix protocol
| | Sample_scan_protocol | Hewlett–Packard Gene Array Scanner
| | Sample_data_processing | GCRMA (using gcrma package from R/Bioconductor). Each platform was preprocess separately, then merged. An extra quantile normalization was needed to normalized across platforms.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Mayte,,Suarez-Farinas
| | Sample_contact_email | farinam@rockefeller.edu
| | Sample_contact_institute | Rockefeller University
| | Sample_contact_address | 1230 York ave
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10075
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM688nnn/GSM688743/suppl/GSM688743_8_HGU133_plus_2.0_Irma_022510.CEL.gz
| | Sample_series_id | GSE27887
| | Sample_data_row_count | 54675
| | |
|
GSM688744 | GPL570 |
|
P2, POST, ANL non-lesional
|
P2, POST, ANL
|
treatment: NB-UVB
patient: P2
time: post-treatment
tissue: non-lesional skin
scorad: 0
|
|
| Sample_geo_accession | GSM688744
| | Sample_status | Public on Jul 01 2011
| | Sample_submission_date | Mar 10 2011
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen RNeasy Kit protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | standard GeneChip Affymetrix protocol
| | Sample_hyb_protocol | standard GeneChip Affymetrix protocol
| | Sample_scan_protocol | Hewlett–Packard Gene Array Scanner
| | Sample_data_processing | GCRMA (using gcrma package from R/Bioconductor). Each platform was preprocess separately, then merged. An extra quantile normalization was needed to normalized across platforms.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Mayte,,Suarez-Farinas
| | Sample_contact_email | farinam@rockefeller.edu
| | Sample_contact_institute | Rockefeller University
| | Sample_contact_address | 1230 York ave
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10075
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM688nnn/GSM688744/suppl/GSM688744_9_HGU133_plus_2.0_Irma_022510.CEL.gz
| | Sample_series_id | GSE27887
| | Sample_data_row_count | 54675
| | |
|
GSM688745 | GPL570 |
|
P2, POST, AL lesional
|
P2, POST, AL
|
treatment: NB-UVB
patient: P2
time: post-treatment
tissue: lesional skin
scorad: 0
|
|
| Sample_geo_accession | GSM688745
| | Sample_status | Public on Jul 01 2011
| | Sample_submission_date | Mar 10 2011
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen RNeasy Kit protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | standard GeneChip Affymetrix protocol
| | Sample_hyb_protocol | standard GeneChip Affymetrix protocol
| | Sample_scan_protocol | Hewlett–Packard Gene Array Scanner
| | Sample_data_processing | GCRMA (using gcrma package from R/Bioconductor). Each platform was preprocess separately, then merged. An extra quantile normalization was needed to normalized across platforms.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Mayte,,Suarez-Farinas
| | Sample_contact_email | farinam@rockefeller.edu
| | Sample_contact_institute | Rockefeller University
| | Sample_contact_address | 1230 York ave
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10075
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM688nnn/GSM688745/suppl/GSM688745_10_HGU133_plus_2.0_Irma_022510.CEL.gz
| | Sample_series_id | GSE27887
| | Sample_data_row_count | 54675
| | |
|
GSM688746 | GPL570 |
|
P4, POST, ANL non-lesional
|
P4, POST, ANL
|
treatment: NB-UVB
patient: P4
time: post-treatment
tissue: non-lesional skin
scorad: 0
|
|
| Sample_geo_accession | GSM688746
| | Sample_status | Public on Jul 01 2011
| | Sample_submission_date | Mar 10 2011
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen RNeasy Kit protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | standard GeneChip Affymetrix protocol
| | Sample_hyb_protocol | standard GeneChip Affymetrix protocol
| | Sample_scan_protocol | Hewlett–Packard Gene Array Scanner
| | Sample_data_processing | GCRMA (using gcrma package from R/Bioconductor). Each platform was preprocess separately, then merged. An extra quantile normalization was needed to normalized across platforms.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Mayte,,Suarez-Farinas
| | Sample_contact_email | farinam@rockefeller.edu
| | Sample_contact_institute | Rockefeller University
| | Sample_contact_address | 1230 York ave
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10075
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM688nnn/GSM688746/suppl/GSM688746_11_HGU133_plus_2.0_Irma_022510.CEL.gz
| | Sample_series_id | GSE27887
| | Sample_data_row_count | 54675
| | |
|
GSM688747 | GPL570 |
|
P4, POST, AL lesional
|
P4, POST, AL
|
treatment: NB-UVB
patient: P4
time: post-treatment
tissue: lesional skin
scorad: 0
|
|
| Sample_geo_accession | GSM688747
| | Sample_status | Public on Jul 01 2011
| | Sample_submission_date | Mar 10 2011
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen RNeasy Kit protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | standard GeneChip Affymetrix protocol
| | Sample_hyb_protocol | standard GeneChip Affymetrix protocol
| | Sample_scan_protocol | Hewlett–Packard Gene Array Scanner
| | Sample_data_processing | GCRMA (using gcrma package from R/Bioconductor). Each platform was preprocess separately, then merged. An extra quantile normalization was needed to normalized across platforms.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Mayte,,Suarez-Farinas
| | Sample_contact_email | farinam@rockefeller.edu
| | Sample_contact_institute | Rockefeller University
| | Sample_contact_address | 1230 York ave
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10075
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM688nnn/GSM688747/suppl/GSM688747_12_HGU133_plus_2.0_Irma_022510.CEL.gz
| | Sample_series_id | GSE27887
| | Sample_data_row_count | 54675
| | |
|
GSM688748 | GPL570 |
|
P6, POST, ANL non-lesional
|
P6, POST, ANL
|
treatment: NB-UVB
patient: P6
time: post-treatment
tissue: non-lesional skin
scorad: 0
|
|
| Sample_geo_accession | GSM688748
| | Sample_status | Public on Jul 01 2011
| | Sample_submission_date | Mar 10 2011
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen RNeasy Kit protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | standard GeneChip Affymetrix protocol
| | Sample_hyb_protocol | standard GeneChip Affymetrix protocol
| | Sample_scan_protocol | Hewlett–Packard Gene Array Scanner
| | Sample_data_processing | GCRMA (using gcrma package from R/Bioconductor). Each platform was preprocess separately, then merged. An extra quantile normalization was needed to normalized across platforms.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Mayte,,Suarez-Farinas
| | Sample_contact_email | farinam@rockefeller.edu
| | Sample_contact_institute | Rockefeller University
| | Sample_contact_address | 1230 York ave
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10075
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM688nnn/GSM688748/suppl/GSM688748_13_HGU133_plus_2.0_Irma_022510.CEL.gz
| | Sample_series_id | GSE27887
| | Sample_data_row_count | 54675
| | |
|
GSM688749 | GPL570 |
|
P6, POST, AL lesional
|
P6, POST, AL
|
treatment: NB-UVB
patient: P6
time: post-treatment
tissue: lesional skin
scorad: 0
|
|
| Sample_geo_accession | GSM688749
| | Sample_status | Public on Jul 01 2011
| | Sample_submission_date | Mar 10 2011
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen RNeasy Kit protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | standard GeneChip Affymetrix protocol
| | Sample_hyb_protocol | standard GeneChip Affymetrix protocol
| | Sample_scan_protocol | Hewlett–Packard Gene Array Scanner
| | Sample_data_processing | GCRMA (using gcrma package from R/Bioconductor). Each platform was preprocess separately, then merged. An extra quantile normalization was needed to normalized across platforms.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Mayte,,Suarez-Farinas
| | Sample_contact_email | farinam@rockefeller.edu
| | Sample_contact_institute | Rockefeller University
| | Sample_contact_address | 1230 York ave
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10075
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM688nnn/GSM688749/suppl/GSM688749_14_HGU133_plus_2.0_Irma_022510.CEL.gz
| | Sample_series_id | GSE27887
| | Sample_data_row_count | 54675
| | |
|
GSM688750 | GPL570 |
|
P5, POST, ANL non-lesional
|
P5, POST, ANL
|
treatment: NB-UVB
patient: P5
time: post-treatment
tissue: non-lesional skin
scorad: 0
|
|
| Sample_geo_accession | GSM688750
| | Sample_status | Public on Jul 01 2011
| | Sample_submission_date | Mar 10 2011
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen RNeasy Kit protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | standard GeneChip Affymetrix protocol
| | Sample_hyb_protocol | standard GeneChip Affymetrix protocol
| | Sample_scan_protocol | Hewlett–Packard Gene Array Scanner
| | Sample_data_processing | GCRMA (using gcrma package from R/Bioconductor). Each platform was preprocess separately, then merged. An extra quantile normalization was needed to normalized across platforms.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Mayte,,Suarez-Farinas
| | Sample_contact_email | farinam@rockefeller.edu
| | Sample_contact_institute | Rockefeller University
| | Sample_contact_address | 1230 York ave
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10075
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM688nnn/GSM688750/suppl/GSM688750_17_HGU133_plus_2.0_Irma_022510.CEL.gz
| | Sample_series_id | GSE27887
| | Sample_data_row_count | 54675
| | |
|
GSM688751 | GPL570 |
|
P5, POST, AL lesional
|
P5, POST, AL
|
treatment: NB-UVB
patient: P5
time: post-treatment
tissue: lesional skin
scorad: 0
|
|
| Sample_geo_accession | GSM688751
| | Sample_status | Public on Jul 01 2011
| | Sample_submission_date | Mar 10 2011
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen RNeasy Kit protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | standard GeneChip Affymetrix protocol
| | Sample_hyb_protocol | standard GeneChip Affymetrix protocol
| | Sample_scan_protocol | Hewlett–Packard Gene Array Scanner
| | Sample_data_processing | GCRMA (using gcrma package from R/Bioconductor). Each platform was preprocess separately, then merged. An extra quantile normalization was needed to normalized across platforms.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Mayte,,Suarez-Farinas
| | Sample_contact_email | farinam@rockefeller.edu
| | Sample_contact_institute | Rockefeller University
| | Sample_contact_address | 1230 York ave
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10075
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM688nnn/GSM688751/suppl/GSM688751_18_HGU133_plus_2.0_Irma_022510.CEL.gz
| | Sample_series_id | GSE27887
| | Sample_data_row_count | 54675
| | |
|
GSM688752 | GPL570 |
|
P8, POST, ANL non-lesional
|
P8, POST, ANL
|
treatment: NB-UVB
patient: P8
time: post-treatment
tissue: non-lesional skin
scorad: 0
|
|
| Sample_geo_accession | GSM688752
| | Sample_status | Public on Jul 01 2011
| | Sample_submission_date | Mar 10 2011
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen RNeasy Kit protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | standard GeneChip Affymetrix protocol
| | Sample_hyb_protocol | standard GeneChip Affymetrix protocol
| | Sample_scan_protocol | Hewlett–Packard Gene Array Scanner
| | Sample_data_processing | GCRMA (using gcrma package from R/Bioconductor). Each platform was preprocess separately, then merged. An extra quantile normalization was needed to normalized across platforms.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Mayte,,Suarez-Farinas
| | Sample_contact_email | farinam@rockefeller.edu
| | Sample_contact_institute | Rockefeller University
| | Sample_contact_address | 1230 York ave
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10075
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM688nnn/GSM688752/suppl/GSM688752_19_HGU133_plus_2.0_Irma_022510.CEL.gz
| | Sample_series_id | GSE27887
| | Sample_data_row_count | 54675
| | |
|
GSM688753 | GPL570 |
|
P8, POST, AL lesional
|
P8, POST, AL
|
treatment: NB-UVB
patient: P8
time: post-treatment
tissue: lesional skin
scorad: 0
|
|
| Sample_geo_accession | GSM688753
| | Sample_status | Public on Jul 01 2011
| | Sample_submission_date | Mar 10 2011
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen RNeasy Kit protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | standard GeneChip Affymetrix protocol
| | Sample_hyb_protocol | standard GeneChip Affymetrix protocol
| | Sample_scan_protocol | Hewlett–Packard Gene Array Scanner
| | Sample_data_processing | GCRMA (using gcrma package from R/Bioconductor). Each platform was preprocess separately, then merged. An extra quantile normalization was needed to normalized across platforms.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Mayte,,Suarez-Farinas
| | Sample_contact_email | farinam@rockefeller.edu
| | Sample_contact_institute | Rockefeller University
| | Sample_contact_address | 1230 York ave
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10075
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM688nnn/GSM688753/suppl/GSM688753_20_HGU133_plus_2.0_Irma_022510.CEL.gz
| | Sample_series_id | GSE27887
| | Sample_data_row_count | 54675
| | |
|
GSM688754 | GPL570 |
|
P3, POST, ANL non-lesional
|
P3, POST, ANL
|
treatment: NB-UVB
patient: P3
time: post-treatment
tissue: non-lesional skin
scorad: 0
|
|
| Sample_geo_accession | GSM688754
| | Sample_status | Public on Jul 01 2011
| | Sample_submission_date | Mar 10 2011
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen RNeasy Kit protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | standard GeneChip Affymetrix protocol
| | Sample_hyb_protocol | standard GeneChip Affymetrix protocol
| | Sample_scan_protocol | Hewlett–Packard Gene Array Scanner
| | Sample_data_processing | GCRMA (using gcrma package from R/Bioconductor). Each platform was preprocess separately, then merged. An extra quantile normalization was needed to normalized across platforms.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Mayte,,Suarez-Farinas
| | Sample_contact_email | farinam@rockefeller.edu
| | Sample_contact_institute | Rockefeller University
| | Sample_contact_address | 1230 York ave
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10075
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM688nnn/GSM688754/suppl/GSM688754_21_HGU133_plus_2.0_Irma_030310.CEL.gz
| | Sample_series_id | GSE27887
| | Sample_data_row_count | 54675
| | |
|
GSM688755 | GPL570 |
|
P3, POST, AL lesional
|
P3, POST, AL
|
treatment: NB-UVB
patient: P3
time: post-treatment
tissue: lesional skin
scorad: 0
|
|
| Sample_geo_accession | GSM688755
| | Sample_status | Public on Jul 01 2011
| | Sample_submission_date | Mar 10 2011
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen RNeasy Kit protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | standard GeneChip Affymetrix protocol
| | Sample_hyb_protocol | standard GeneChip Affymetrix protocol
| | Sample_scan_protocol | Hewlett–Packard Gene Array Scanner
| | Sample_data_processing | GCRMA (using gcrma package from R/Bioconductor). Each platform was preprocess separately, then merged. An extra quantile normalization was needed to normalized across platforms.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Mayte,,Suarez-Farinas
| | Sample_contact_email | farinam@rockefeller.edu
| | Sample_contact_institute | Rockefeller University
| | Sample_contact_address | 1230 York ave
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10075
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM688nnn/GSM688755/suppl/GSM688755_22_HGU133_plus_2.0_Irma_030310.CEL.gz
| | Sample_series_id | GSE27887
| | Sample_data_row_count | 54675
| | |
|
GSM688756 | GPL570 |
|
P7, PRE, ANL non-lesional
|
P7, PRE, ANL
|
treatment: NB-UVB
patient: P7
time: pre-treatment
tissue: non-lesional skin
scorad: 0
|
|
| Sample_geo_accession | GSM688756
| | Sample_status | Public on Jul 01 2011
| | Sample_submission_date | Mar 10 2011
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen RNeasy Kit protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | standard GeneChip Affymetrix protocol
| | Sample_hyb_protocol | standard GeneChip Affymetrix protocol
| | Sample_scan_protocol | Hewlett–Packard Gene Array Scanner
| | Sample_data_processing | GCRMA (using gcrma package from R/Bioconductor). Each platform was preprocess separately, then merged. An extra quantile normalization was needed to normalized across platforms.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Mayte,,Suarez-Farinas
| | Sample_contact_email | farinam@rockefeller.edu
| | Sample_contact_institute | Rockefeller University
| | Sample_contact_address | 1230 York ave
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10075
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM688nnn/GSM688756/suppl/GSM688756_23_HGU133_plus_2.0_Irma_030310.CEL.gz
| | Sample_series_id | GSE27887
| | Sample_data_row_count | 54675
| | |
|
GSM688757 | GPL570 |
|
P7, PRE, AL lesional
|
P7, PRE, AL
|
treatment: NB-UVB
patient: P7
time: pre-treatment
tissue: lesional skin
scorad: 55
|
|
| Sample_geo_accession | GSM688757
| | Sample_status | Public on Jul 01 2011
| | Sample_submission_date | Mar 10 2011
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen RNeasy Kit protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | standard GeneChip Affymetrix protocol
| | Sample_hyb_protocol | standard GeneChip Affymetrix protocol
| | Sample_scan_protocol | Hewlett–Packard Gene Array Scanner
| | Sample_data_processing | GCRMA (using gcrma package from R/Bioconductor). Each platform was preprocess separately, then merged. An extra quantile normalization was needed to normalized across platforms.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Mayte,,Suarez-Farinas
| | Sample_contact_email | farinam@rockefeller.edu
| | Sample_contact_institute | Rockefeller University
| | Sample_contact_address | 1230 York ave
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10075
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM688nnn/GSM688757/suppl/GSM688757_24_HGU133_plus_2.0_Irma_030310.CEL.gz
| | Sample_series_id | GSE27887
| | Sample_data_row_count | 54675
| | |
|
GSM688758 | GPL570 |
|
P9, PRE, ANL non-lesional
|
P9, PRE, ANL
|
treatment: NB-UVB
patient: P9
time: pre-treatment
tissue: non-lesional skin
scorad: 0
|
|
| Sample_geo_accession | GSM688758
| | Sample_status | Public on Jul 01 2011
| | Sample_submission_date | Mar 10 2011
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen RNeasy Kit protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | standard GeneChip Affymetrix protocol
| | Sample_hyb_protocol | standard GeneChip Affymetrix protocol
| | Sample_scan_protocol | Hewlett–Packard Gene Array Scanner
| | Sample_data_processing | GCRMA (using gcrma package from R/Bioconductor). Each platform was preprocess separately, then merged. An extra quantile normalization was needed to normalized across platforms.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Mayte,,Suarez-Farinas
| | Sample_contact_email | farinam@rockefeller.edu
| | Sample_contact_institute | Rockefeller University
| | Sample_contact_address | 1230 York ave
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10075
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM688nnn/GSM688758/suppl/GSM688758_25_HGU133_plus_2.0_Irma_030310.CEL.gz
| | Sample_series_id | GSE27887
| | Sample_data_row_count | 54675
| | |
|
GSM688759 | GPL570 |
|
P9, PRE, AL lesional
|
P9, PRE, AL
|
treatment: NB-UVB
patient: P9
time: pre-treatment
tissue: lesional skin
scorad: 76
|
|
| Sample_geo_accession | GSM688759
| | Sample_status | Public on Jul 01 2011
| | Sample_submission_date | Mar 10 2011
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen RNeasy Kit protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | standard GeneChip Affymetrix protocol
| | Sample_hyb_protocol | standard GeneChip Affymetrix protocol
| | Sample_scan_protocol | Hewlett–Packard Gene Array Scanner
| | Sample_data_processing | GCRMA (using gcrma package from R/Bioconductor). Each platform was preprocess separately, then merged. An extra quantile normalization was needed to normalized across platforms.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Mayte,,Suarez-Farinas
| | Sample_contact_email | farinam@rockefeller.edu
| | Sample_contact_institute | Rockefeller University
| | Sample_contact_address | 1230 York ave
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10075
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM688nnn/GSM688759/suppl/GSM688759_26_HGU133_plus_2.0_Irma_030310.CEL.gz
| | Sample_series_id | GSE27887
| | Sample_data_row_count | 54675
| | |
|
GSM688760 | GPL570 |
|
P1, PRE, ANL non-lesional
|
P1, PRE, ANL
|
treatment: NB-UVB
patient: P1
time: pre-treatment
tissue: non-lesional skin
scorad: 0
|
|
| Sample_geo_accession | GSM688760
| | Sample_status | Public on Jul 01 2011
| | Sample_submission_date | Mar 10 2011
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen RNeasy Kit protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | standard GeneChip Affymetrix protocol
| | Sample_hyb_protocol | standard GeneChip Affymetrix protocol
| | Sample_scan_protocol | Hewlett–Packard Gene Array Scanner
| | Sample_data_processing | GCRMA (using gcrma package from R/Bioconductor). Each platform was preprocess separately, then merged. An extra quantile normalization was needed to normalized across platforms.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Mayte,,Suarez-Farinas
| | Sample_contact_email | farinam@rockefeller.edu
| | Sample_contact_institute | Rockefeller University
| | Sample_contact_address | 1230 York ave
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10075
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM688nnn/GSM688760/suppl/GSM688760_27_HGU133_plus_2.0_Irma_030310.CEL.gz
| | Sample_series_id | GSE27887
| | Sample_data_row_count | 54675
| | |
|
GSM688761 | GPL570 |
|
P1, PRE, AL lesional
|
P1, PRE, AL
|
treatment: NB-UVB
patient: P1
time: pre-treatment
tissue: lesional skin
scorad: 37
|
|
| Sample_geo_accession | GSM688761
| | Sample_status | Public on Jul 01 2011
| | Sample_submission_date | Mar 10 2011
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen RNeasy Kit protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | standard GeneChip Affymetrix protocol
| | Sample_hyb_protocol | standard GeneChip Affymetrix protocol
| | Sample_scan_protocol | Hewlett–Packard Gene Array Scanner
| | Sample_data_processing | GCRMA (using gcrma package from R/Bioconductor). Each platform was preprocess separately, then merged. An extra quantile normalization was needed to normalized across platforms.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Mayte,,Suarez-Farinas
| | Sample_contact_email | farinam@rockefeller.edu
| | Sample_contact_institute | Rockefeller University
| | Sample_contact_address | 1230 York ave
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10075
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM688nnn/GSM688761/suppl/GSM688761_28_HGU133_plus_2.0_Irma_030310.CEL.gz
| | Sample_series_id | GSE27887
| | Sample_data_row_count | 54675
| | |
|
GSM688762 | GPL570 |
|
P10, PRE, ANL non-lesional
|
P10, PRE, ANL
|
treatment: NB-UVB
patient: P10
time: pre-treatment
tissue: non-lesional skin
scorad: 0
|
|
| Sample_geo_accession | GSM688762
| | Sample_status | Public on Jul 01 2011
| | Sample_submission_date | Mar 10 2011
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen RNeasy Kit protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | standard GeneChip Affymetrix protocol
| | Sample_hyb_protocol | standard GeneChip Affymetrix protocol
| | Sample_scan_protocol | Hewlett–Packard Gene Array Scanner
| | Sample_data_processing | GCRMA (using gcrma package from R/Bioconductor). Each platform was preprocess separately, then merged. An extra quantile normalization was needed to normalized across platforms.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Mayte,,Suarez-Farinas
| | Sample_contact_email | farinam@rockefeller.edu
| | Sample_contact_institute | Rockefeller University
| | Sample_contact_address | 1230 York ave
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10075
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM688nnn/GSM688762/suppl/GSM688762_29_HGU133_plus_2.0_Irma_030310.CEL.gz
| | Sample_series_id | GSE27887
| | Sample_data_row_count | 54675
| | |
|
GSM688763 | GPL570 |
|
P10, PRE, AL lesional
|
P10, PRE, AL
|
treatment: NB-UVB
patient: P10
time: pre-treatment
tissue: lesional skin
scorad: 70
|
|
| Sample_geo_accession | GSM688763
| | Sample_status | Public on Jul 01 2011
| | Sample_submission_date | Mar 10 2011
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen RNeasy Kit protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | standard GeneChip Affymetrix protocol
| | Sample_hyb_protocol | standard GeneChip Affymetrix protocol
| | Sample_scan_protocol | Hewlett–Packard Gene Array Scanner
| | Sample_data_processing | GCRMA (using gcrma package from R/Bioconductor). Each platform was preprocess separately, then merged. An extra quantile normalization was needed to normalized across platforms.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Mayte,,Suarez-Farinas
| | Sample_contact_email | farinam@rockefeller.edu
| | Sample_contact_institute | Rockefeller University
| | Sample_contact_address | 1230 York ave
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10075
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM688nnn/GSM688763/suppl/GSM688763_30_HGU133_plus_2.0_Irma_030310.CEL.gz
| | Sample_series_id | GSE27887
| | Sample_data_row_count | 54675
| | |
|
GSM688764 | GPL570 |
|
P2, PRE, ANL non-lesional
|
P2, PRE, ANL
|
treatment: NB-UVB
patient: P2
time: pre-treatment
tissue: non-lesional skin
scorad: 0
|
|
| Sample_geo_accession | GSM688764
| | Sample_status | Public on Jul 01 2011
| | Sample_submission_date | Mar 10 2011
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen RNeasy Kit protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | standard GeneChip Affymetrix protocol
| | Sample_hyb_protocol | standard GeneChip Affymetrix protocol
| | Sample_scan_protocol | Hewlett–Packard Gene Array Scanner
| | Sample_data_processing | GCRMA (using gcrma package from R/Bioconductor). Each platform was preprocess separately, then merged. An extra quantile normalization was needed to normalized across platforms.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Mayte,,Suarez-Farinas
| | Sample_contact_email | farinam@rockefeller.edu
| | Sample_contact_institute | Rockefeller University
| | Sample_contact_address | 1230 York ave
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10075
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM688nnn/GSM688764/suppl/GSM688764_31_HGU133_plus_2.0_Irma_030310.CEL.gz
| | Sample_series_id | GSE27887
| | Sample_data_row_count | 54675
| | |
|
GSM688765 | GPL570 |
|
P2, PRE, AL lesional
|
P2, PRE, AL
|
treatment: NB-UVB
patient: P2
time: pre-treatment
tissue: lesional skin
scorad: 51
|
|
| Sample_geo_accession | GSM688765
| | Sample_status | Public on Jul 01 2011
| | Sample_submission_date | Mar 10 2011
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen RNeasy Kit protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | standard GeneChip Affymetrix protocol
| | Sample_hyb_protocol | standard GeneChip Affymetrix protocol
| | Sample_scan_protocol | Hewlett–Packard Gene Array Scanner
| | Sample_data_processing | GCRMA (using gcrma package from R/Bioconductor). Each platform was preprocess separately, then merged. An extra quantile normalization was needed to normalized across platforms.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Mayte,,Suarez-Farinas
| | Sample_contact_email | farinam@rockefeller.edu
| | Sample_contact_institute | Rockefeller University
| | Sample_contact_address | 1230 York ave
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10075
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM688nnn/GSM688765/suppl/GSM688765_32_HGU133_plus_2.0_Irma_030310.CEL.gz
| | Sample_series_id | GSE27887
| | Sample_data_row_count | 54675
| | |
|
GSM688766 | GPL570 |
|
P4, PRE, ANL non-lesional
|
P4, PRE, ANL
|
treatment: NB-UVB
patient: P4
time: pre-treatment
tissue: non-lesional skin
scorad: 0
|
|
| Sample_geo_accession | GSM688766
| | Sample_status | Public on Jul 01 2011
| | Sample_submission_date | Mar 10 2011
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen RNeasy Kit protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | standard GeneChip Affymetrix protocol
| | Sample_hyb_protocol | standard GeneChip Affymetrix protocol
| | Sample_scan_protocol | Hewlett–Packard Gene Array Scanner
| | Sample_data_processing | GCRMA (using gcrma package from R/Bioconductor). Each platform was preprocess separately, then merged. An extra quantile normalization was needed to normalized across platforms.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Mayte,,Suarez-Farinas
| | Sample_contact_email | farinam@rockefeller.edu
| | Sample_contact_institute | Rockefeller University
| | Sample_contact_address | 1230 York ave
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10075
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM688nnn/GSM688766/suppl/GSM688766_33_HGU133_plus_2.0_Irma_030310.CEL.gz
| | Sample_series_id | GSE27887
| | Sample_data_row_count | 54675
| | |
|
GSM688767 | GPL570 |
|
P4, PRE, AL lesional
|
P4, PRE, AL
|
treatment: NB-UVB
patient: P4
time: pre-treatment
tissue: lesional skin
scorad: 33
|
|
| Sample_geo_accession | GSM688767
| | Sample_status | Public on Jul 01 2011
| | Sample_submission_date | Mar 10 2011
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen RNeasy Kit protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | standard GeneChip Affymetrix protocol
| | Sample_hyb_protocol | standard GeneChip Affymetrix protocol
| | Sample_scan_protocol | Hewlett–Packard Gene Array Scanner
| | Sample_data_processing | GCRMA (using gcrma package from R/Bioconductor). Each platform was preprocess separately, then merged. An extra quantile normalization was needed to normalized across platforms.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Mayte,,Suarez-Farinas
| | Sample_contact_email | farinam@rockefeller.edu
| | Sample_contact_institute | Rockefeller University
| | Sample_contact_address | 1230 York ave
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10075
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM688nnn/GSM688767/suppl/GSM688767_34_HGU133_plus_2.0_Irma_030310.CEL.gz
| | Sample_series_id | GSE27887
| | Sample_data_row_count | 54675
| | |
|
GSM688768 | GPL570 |
|
P6, PRE, AL lesional
|
P6, PRE, AL
|
treatment: NB-UVB
patient: P6
time: pre-treatment
tissue: lesional skin
scorad: 0
|
|
| Sample_geo_accession | GSM688768
| | Sample_status | Public on Jul 01 2011
| | Sample_submission_date | Mar 10 2011
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen RNeasy Kit protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | standard GeneChip Affymetrix protocol
| | Sample_hyb_protocol | standard GeneChip Affymetrix protocol
| | Sample_scan_protocol | Hewlett–Packard Gene Array Scanner
| | Sample_data_processing | GCRMA (using gcrma package from R/Bioconductor). Each platform was preprocess separately, then merged. An extra quantile normalization was needed to normalized across platforms.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Mayte,,Suarez-Farinas
| | Sample_contact_email | farinam@rockefeller.edu
| | Sample_contact_institute | Rockefeller University
| | Sample_contact_address | 1230 York ave
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10075
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM688nnn/GSM688768/suppl/GSM688768_35_HGU133_plus_2.0_Irma_030310.CEL.gz
| | Sample_series_id | GSE27887
| | Sample_data_row_count | 54675
| | |
|
GSM688769 | GPL570 |
|
P5, PRE, ANL non-lesional
|
P5, PRE, ANL
|
treatment: NB-UVB
patient: P5
time: pre-treatment
tissue: non-lesional skin
scorad: 57
|
|
| Sample_geo_accession | GSM688769
| | Sample_status | Public on Jul 01 2011
| | Sample_submission_date | Mar 10 2011
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen RNeasy Kit protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | standard GeneChip Affymetrix protocol
| | Sample_hyb_protocol | standard GeneChip Affymetrix protocol
| | Sample_scan_protocol | Hewlett–Packard Gene Array Scanner
| | Sample_data_processing | GCRMA (using gcrma package from R/Bioconductor). Each platform was preprocess separately, then merged. An extra quantile normalization was needed to normalized across platforms.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Mayte,,Suarez-Farinas
| | Sample_contact_email | farinam@rockefeller.edu
| | Sample_contact_institute | Rockefeller University
| | Sample_contact_address | 1230 York ave
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10075
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM688nnn/GSM688769/suppl/GSM688769_38_HGU133_plus_2.0_Irma_030310.CEL.gz
| | Sample_series_id | GSE27887
| | Sample_data_row_count | 54675
| | |
|
GSM688770 | GPL570 |
|
P8, PRE, AL lesional
|
P8, PRE, AL
|
treatment: NB-UVB
patient: P8
time: pre-treatment
tissue: lesional skin
scorad: 0
|
|
| Sample_geo_accession | GSM688770
| | Sample_status | Public on Jul 01 2011
| | Sample_submission_date | Mar 10 2011
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen RNeasy Kit protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | standard GeneChip Affymetrix protocol
| | Sample_hyb_protocol | standard GeneChip Affymetrix protocol
| | Sample_scan_protocol | Hewlett–Packard Gene Array Scanner
| | Sample_data_processing | GCRMA (using gcrma package from R/Bioconductor). Each platform was preprocess separately, then merged. An extra quantile normalization was needed to normalized across platforms.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Mayte,,Suarez-Farinas
| | Sample_contact_email | farinam@rockefeller.edu
| | Sample_contact_institute | Rockefeller University
| | Sample_contact_address | 1230 York ave
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10075
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM688nnn/GSM688770/suppl/GSM688770_39_HGU133_plus_2.0_Irma_030310.CEL.gz
| | Sample_series_id | GSE27887
| | Sample_data_row_count | 54675
| | |
|
GSM688771 | GPL570 |
|
P3, PRE, ANL non-lesional
|
P3, PRE, ANL
|
treatment: NB-UVB
patient: P3
time: pre-treatment
tissue: non-lesional skin
scorad: 36
|
|
| Sample_geo_accession | GSM688771
| | Sample_status | Public on Jul 01 2011
| | Sample_submission_date | Mar 10 2011
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen RNeasy Kit protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | standard GeneChip Affymetrix protocol
| | Sample_hyb_protocol | standard GeneChip Affymetrix protocol
| | Sample_scan_protocol | Hewlett–Packard Gene Array Scanner
| | Sample_data_processing | GCRMA (using gcrma package from R/Bioconductor). Each platform was preprocess separately, then merged. An extra quantile normalization was needed to normalized across platforms.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Mayte,,Suarez-Farinas
| | Sample_contact_email | farinam@rockefeller.edu
| | Sample_contact_institute | Rockefeller University
| | Sample_contact_address | 1230 York ave
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10075
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM688nnn/GSM688771/suppl/GSM688771_40_HGU133_plus_2.0_Irma_030310.CEL.gz
| | Sample_series_id | GSE27887
| | Sample_data_row_count | 54675
| | |
|
GSM688772 | GPL570 |
|
P3, PRE, AL lesional
|
P3, PRE, AL
|
treatment: NB-UVB
patient: P3
time: pre-treatment
tissue: lesional skin
scorad: 0
|
|
| Sample_geo_accession | GSM688772
| | Sample_status | Public on Jul 01 2011
| | Sample_submission_date | Mar 10 2011
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen RNeasy Kit protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | standard GeneChip Affymetrix protocol
| | Sample_hyb_protocol | standard GeneChip Affymetrix protocol
| | Sample_scan_protocol | Hewlett–Packard Gene Array Scanner
| | Sample_data_processing | GCRMA (using gcrma package from R/Bioconductor). Each platform was preprocess separately, then merged. An extra quantile normalization was needed to normalized across platforms.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Mayte,,Suarez-Farinas
| | Sample_contact_email | farinam@rockefeller.edu
| | Sample_contact_institute | Rockefeller University
| | Sample_contact_address | 1230 York ave
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10075
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM688nnn/GSM688772/suppl/GSM688772_41_HGU133_plus_2.0_Irma_030310.CEL.gz
| | Sample_series_id | GSE27887
| | Sample_data_row_count | 54675
| | |
|
| |
| |
Make groups for comparisons |
(2 groups will be compared at a time) |
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| Select GSMs and click on "Add groups" |
Enter the group name here: |
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