Search results for the GEO ID: GSE27914  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM689410 | GPL570 |
|
BIO586229
|
siRNA COP1.ETV1 scanned on 07/21/10
|
cell line: LNCap
sirna transfection: siRNA COP1.ETV1
|
|
| Sample_geo_accession | GSM689410
| | Sample_status | Public on Apr 08 2011
| | Sample_submission_date | Mar 11 2011
| | Sample_last_update_date | Apr 08 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | siRNA oligonucleotides (Dharmacon) were transfected with Lipofectamine2000 and LipofectamineRNAiMax (Invitrogen) into LNCaP cells. Cell lysates were prepared 48h after siRNA transfection.
| | Sample_growth_protocol_ch1 | LNCap cells were cultured overnight in serum-free medium.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total cellular RNA was prepared with a RNeasy Plus kit (Qiagen) and subject to DNAse I digestion.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | HGU 133 plus 2.0 arrays were hybridized according to the Affymetrix protocol
| | Sample_scan_protocol | HGU 133 plus 2.0 arrays were scanned according to the Affymetrix protocol
| | Sample_data_processing | Affymetrix HGU 133 plus 2.0 intensity signal CEL files were processed using the RMA algorithm as implemented in the 'affy' package from Bioconductor.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jinfeng,,Liu
| | Sample_contact_email | jinfengl@gene.com
| | Sample_contact_department | Bioinformatics and Computational Biology
| | Sample_contact_institute | Genentech Inc.
| | Sample_contact_address | 1 DNA Way, MS93
| | Sample_contact_city | South San Francisco
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 94080
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM689nnn/GSM689410/suppl/GSM689410.CEL.gz
| | Sample_series_id | GSE27914
| | Sample_data_row_count | 54675
| | |
|
GSM689411 | GPL570 |
|
BIO586232
|
siRNA COP1.ETV1 scanned on 07/21/10
|
cell line: LNCap
sirna transfection: siRNA COP1.ETV1
|
|
| Sample_geo_accession | GSM689411
| | Sample_status | Public on Apr 08 2011
| | Sample_submission_date | Mar 11 2011
| | Sample_last_update_date | Apr 08 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | siRNA oligonucleotides (Dharmacon) were transfected with Lipofectamine2000 and LipofectamineRNAiMax (Invitrogen) into LNCaP cells. Cell lysates were prepared 48h after siRNA transfection.
| | Sample_growth_protocol_ch1 | LNCap cells were cultured overnight in serum-free medium.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total cellular RNA was prepared with a RNeasy Plus kit (Qiagen) and subject to DNAse I digestion.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | HGU 133 plus 2.0 arrays were hybridized according to the Affymetrix protocol
| | Sample_scan_protocol | HGU 133 plus 2.0 arrays were scanned according to the Affymetrix protocol
| | Sample_data_processing | Affymetrix HGU 133 plus 2.0 intensity signal CEL files were processed using the RMA algorithm as implemented in the 'affy' package from Bioconductor.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jinfeng,,Liu
| | Sample_contact_email | jinfengl@gene.com
| | Sample_contact_department | Bioinformatics and Computational Biology
| | Sample_contact_institute | Genentech Inc.
| | Sample_contact_address | 1 DNA Way, MS93
| | Sample_contact_city | South San Francisco
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 94080
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM689nnn/GSM689411/suppl/GSM689411.CEL.gz
| | Sample_series_id | GSE27914
| | Sample_data_row_count | 54675
| | |
|
GSM689412 | GPL570 |
|
BIO588363
|
siRNA COP1.JUN.ETV1 scanned on 11/03/10
|
cell line: LNCap
sirna transfection: siRNA COP1.JUN.ETV1
|
|
| Sample_geo_accession | GSM689412
| | Sample_status | Public on Apr 08 2011
| | Sample_submission_date | Mar 11 2011
| | Sample_last_update_date | Apr 08 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | siRNA oligonucleotides (Dharmacon) were transfected with Lipofectamine2000 and LipofectamineRNAiMax (Invitrogen) into LNCaP cells. Cell lysates were prepared 48h after siRNA transfection.
| | Sample_growth_protocol_ch1 | LNCap cells were cultured overnight in serum-free medium.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total cellular RNA was prepared with a RNeasy Plus kit (Qiagen) and subject to DNAse I digestion.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | HGU 133 plus 2.0 arrays were hybridized according to the Affymetrix protocol
| | Sample_scan_protocol | HGU 133 plus 2.0 arrays were scanned according to the Affymetrix protocol
| | Sample_data_processing | Affymetrix HGU 133 plus 2.0 intensity signal CEL files were processed using the RMA algorithm as implemented in the 'affy' package from Bioconductor.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jinfeng,,Liu
| | Sample_contact_email | jinfengl@gene.com
| | Sample_contact_department | Bioinformatics and Computational Biology
| | Sample_contact_institute | Genentech Inc.
| | Sample_contact_address | 1 DNA Way, MS93
| | Sample_contact_city | South San Francisco
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 94080
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM689nnn/GSM689412/suppl/GSM689412.CEL.gz
| | Sample_series_id | GSE27914
| | Sample_data_row_count | 54675
| | |
|
GSM689413 | GPL570 |
|
BIO588370
|
siRNA COP1.JUN.ETV1 scanned on 11/03/10
|
cell line: LNCap
sirna transfection: siRNA COP1.JUN.ETV1
|
|
| Sample_geo_accession | GSM689413
| | Sample_status | Public on Apr 08 2011
| | Sample_submission_date | Mar 11 2011
| | Sample_last_update_date | Apr 08 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | siRNA oligonucleotides (Dharmacon) were transfected with Lipofectamine2000 and LipofectamineRNAiMax (Invitrogen) into LNCaP cells. Cell lysates were prepared 48h after siRNA transfection.
| | Sample_growth_protocol_ch1 | LNCap cells were cultured overnight in serum-free medium.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total cellular RNA was prepared with a RNeasy Plus kit (Qiagen) and subject to DNAse I digestion.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | HGU 133 plus 2.0 arrays were hybridized according to the Affymetrix protocol
| | Sample_scan_protocol | HGU 133 plus 2.0 arrays were scanned according to the Affymetrix protocol
| | Sample_data_processing | Affymetrix HGU 133 plus 2.0 intensity signal CEL files were processed using the RMA algorithm as implemented in the 'affy' package from Bioconductor.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jinfeng,,Liu
| | Sample_contact_email | jinfengl@gene.com
| | Sample_contact_department | Bioinformatics and Computational Biology
| | Sample_contact_institute | Genentech Inc.
| | Sample_contact_address | 1 DNA Way, MS93
| | Sample_contact_city | South San Francisco
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 94080
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM689nnn/GSM689413/suppl/GSM689413.CEL.gz
| | Sample_series_id | GSE27914
| | Sample_data_row_count | 54675
| | |
|
GSM689414 | GPL570 |
|
BIO588360
|
siRNA COP1.JUN scanned on 11/03/10
|
cell line: LNCap
sirna transfection: siRNA COP1.JUN
|
|
| Sample_geo_accession | GSM689414
| | Sample_status | Public on Apr 08 2011
| | Sample_submission_date | Mar 11 2011
| | Sample_last_update_date | Apr 08 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | siRNA oligonucleotides (Dharmacon) were transfected with Lipofectamine2000 and LipofectamineRNAiMax (Invitrogen) into LNCaP cells. Cell lysates were prepared 48h after siRNA transfection.
| | Sample_growth_protocol_ch1 | LNCap cells were cultured overnight in serum-free medium.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total cellular RNA was prepared with a RNeasy Plus kit (Qiagen) and subject to DNAse I digestion.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | HGU 133 plus 2.0 arrays were hybridized according to the Affymetrix protocol
| | Sample_scan_protocol | HGU 133 plus 2.0 arrays were scanned according to the Affymetrix protocol
| | Sample_data_processing | Affymetrix HGU 133 plus 2.0 intensity signal CEL files were processed using the RMA algorithm as implemented in the 'affy' package from Bioconductor.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jinfeng,,Liu
| | Sample_contact_email | jinfengl@gene.com
| | Sample_contact_department | Bioinformatics and Computational Biology
| | Sample_contact_institute | Genentech Inc.
| | Sample_contact_address | 1 DNA Way, MS93
| | Sample_contact_city | South San Francisco
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 94080
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM689nnn/GSM689414/suppl/GSM689414.CEL.gz
| | Sample_series_id | GSE27914
| | Sample_data_row_count | 54675
| | |
|
GSM689415 | GPL570 |
|
BIO586219
|
siRNA Control1 scanned on 07/21/10
|
cell line: LNCap
sirna transfection: siRNA Control1
|
|
| Sample_geo_accession | GSM689415
| | Sample_status | Public on Apr 08 2011
| | Sample_submission_date | Mar 11 2011
| | Sample_last_update_date | Apr 08 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | siRNA oligonucleotides (Dharmacon) were transfected with Lipofectamine2000 and LipofectamineRNAiMax (Invitrogen) into LNCaP cells. Cell lysates were prepared 48h after siRNA transfection.
| | Sample_growth_protocol_ch1 | LNCap cells were cultured overnight in serum-free medium.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total cellular RNA was prepared with a RNeasy Plus kit (Qiagen) and subject to DNAse I digestion.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | HGU 133 plus 2.0 arrays were hybridized according to the Affymetrix protocol
| | Sample_scan_protocol | HGU 133 plus 2.0 arrays were scanned according to the Affymetrix protocol
| | Sample_data_processing | Affymetrix HGU 133 plus 2.0 intensity signal CEL files were processed using the RMA algorithm as implemented in the 'affy' package from Bioconductor.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jinfeng,,Liu
| | Sample_contact_email | jinfengl@gene.com
| | Sample_contact_department | Bioinformatics and Computational Biology
| | Sample_contact_institute | Genentech Inc.
| | Sample_contact_address | 1 DNA Way, MS93
| | Sample_contact_city | South San Francisco
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 94080
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM689nnn/GSM689415/suppl/GSM689415.CEL.gz
| | Sample_series_id | GSE27914
| | Sample_data_row_count | 54675
| | |
|
GSM689416 | GPL570 |
|
BIO586227
|
siRNA COP1 scanned on 07/21/10
|
cell line: LNCap
sirna transfection: siRNA COP1
|
|
| Sample_geo_accession | GSM689416
| | Sample_status | Public on Apr 08 2011
| | Sample_submission_date | Mar 11 2011
| | Sample_last_update_date | Apr 08 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | siRNA oligonucleotides (Dharmacon) were transfected with Lipofectamine2000 and LipofectamineRNAiMax (Invitrogen) into LNCaP cells. Cell lysates were prepared 48h after siRNA transfection.
| | Sample_growth_protocol_ch1 | LNCap cells were cultured overnight in serum-free medium.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total cellular RNA was prepared with a RNeasy Plus kit (Qiagen) and subject to DNAse I digestion.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | HGU 133 plus 2.0 arrays were hybridized according to the Affymetrix protocol
| | Sample_scan_protocol | HGU 133 plus 2.0 arrays were scanned according to the Affymetrix protocol
| | Sample_data_processing | Affymetrix HGU 133 plus 2.0 intensity signal CEL files were processed using the RMA algorithm as implemented in the 'affy' package from Bioconductor.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jinfeng,,Liu
| | Sample_contact_email | jinfengl@gene.com
| | Sample_contact_department | Bioinformatics and Computational Biology
| | Sample_contact_institute | Genentech Inc.
| | Sample_contact_address | 1 DNA Way, MS93
| | Sample_contact_city | South San Francisco
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 94080
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM689nnn/GSM689416/suppl/GSM689416.CEL.gz
| | Sample_series_id | GSE27914
| | Sample_data_row_count | 54675
| | |
|
GSM689417 | GPL570 |
|
BIO588371
|
siRNA COP1.JUN.ETV1 scanned on 11/03/10
|
cell line: LNCap
sirna transfection: siRNA COP1.JUN.ETV1
|
|
| Sample_geo_accession | GSM689417
| | Sample_status | Public on Apr 08 2011
| | Sample_submission_date | Mar 11 2011
| | Sample_last_update_date | Apr 08 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | siRNA oligonucleotides (Dharmacon) were transfected with Lipofectamine2000 and LipofectamineRNAiMax (Invitrogen) into LNCaP cells. Cell lysates were prepared 48h after siRNA transfection.
| | Sample_growth_protocol_ch1 | LNCap cells were cultured overnight in serum-free medium.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total cellular RNA was prepared with a RNeasy Plus kit (Qiagen) and subject to DNAse I digestion.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | HGU 133 plus 2.0 arrays were hybridized according to the Affymetrix protocol
| | Sample_scan_protocol | HGU 133 plus 2.0 arrays were scanned according to the Affymetrix protocol
| | Sample_data_processing | Affymetrix HGU 133 plus 2.0 intensity signal CEL files were processed using the RMA algorithm as implemented in the 'affy' package from Bioconductor.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jinfeng,,Liu
| | Sample_contact_email | jinfengl@gene.com
| | Sample_contact_department | Bioinformatics and Computational Biology
| | Sample_contact_institute | Genentech Inc.
| | Sample_contact_address | 1 DNA Way, MS93
| | Sample_contact_city | South San Francisco
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 94080
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM689nnn/GSM689417/suppl/GSM689417.CEL.gz
| | Sample_series_id | GSE27914
| | Sample_data_row_count | 54675
| | |
|
GSM689418 | GPL570 |
|
BIO588359
|
siRNA Control2 scanned on 11/03/10
|
cell line: LNCap
sirna transfection: siRNA Control2
|
|
| Sample_geo_accession | GSM689418
| | Sample_status | Public on Apr 08 2011
| | Sample_submission_date | Mar 11 2011
| | Sample_last_update_date | Apr 08 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | siRNA oligonucleotides (Dharmacon) were transfected with Lipofectamine2000 and LipofectamineRNAiMax (Invitrogen) into LNCaP cells. Cell lysates were prepared 48h after siRNA transfection.
| | Sample_growth_protocol_ch1 | LNCap cells were cultured overnight in serum-free medium.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total cellular RNA was prepared with a RNeasy Plus kit (Qiagen) and subject to DNAse I digestion.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | HGU 133 plus 2.0 arrays were hybridized according to the Affymetrix protocol
| | Sample_scan_protocol | HGU 133 plus 2.0 arrays were scanned according to the Affymetrix protocol
| | Sample_data_processing | Affymetrix HGU 133 plus 2.0 intensity signal CEL files were processed using the RMA algorithm as implemented in the 'affy' package from Bioconductor.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jinfeng,,Liu
| | Sample_contact_email | jinfengl@gene.com
| | Sample_contact_department | Bioinformatics and Computational Biology
| | Sample_contact_institute | Genentech Inc.
| | Sample_contact_address | 1 DNA Way, MS93
| | Sample_contact_city | South San Francisco
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 94080
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM689nnn/GSM689418/suppl/GSM689418.CEL.gz
| | Sample_series_id | GSE27914
| | Sample_data_row_count | 54675
| | |
|
GSM689419 | GPL570 |
|
BIO586222
|
siRNA COP1 scanned on 07/21/10
|
cell line: LNCap
sirna transfection: siRNA COP1
|
|
| Sample_geo_accession | GSM689419
| | Sample_status | Public on Apr 08 2011
| | Sample_submission_date | Mar 11 2011
| | Sample_last_update_date | Apr 08 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | siRNA oligonucleotides (Dharmacon) were transfected with Lipofectamine2000 and LipofectamineRNAiMax (Invitrogen) into LNCaP cells. Cell lysates were prepared 48h after siRNA transfection.
| | Sample_growth_protocol_ch1 | LNCap cells were cultured overnight in serum-free medium.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total cellular RNA was prepared with a RNeasy Plus kit (Qiagen) and subject to DNAse I digestion.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | HGU 133 plus 2.0 arrays were hybridized according to the Affymetrix protocol
| | Sample_scan_protocol | HGU 133 plus 2.0 arrays were scanned according to the Affymetrix protocol
| | Sample_data_processing | Affymetrix HGU 133 plus 2.0 intensity signal CEL files were processed using the RMA algorithm as implemented in the 'affy' package from Bioconductor.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jinfeng,,Liu
| | Sample_contact_email | jinfengl@gene.com
| | Sample_contact_department | Bioinformatics and Computational Biology
| | Sample_contact_institute | Genentech Inc.
| | Sample_contact_address | 1 DNA Way, MS93
| | Sample_contact_city | South San Francisco
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 94080
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM689nnn/GSM689419/suppl/GSM689419.CEL.gz
| | Sample_series_id | GSE27914
| | Sample_data_row_count | 54675
| | |
|
GSM689420 | GPL570 |
|
BIO586225
|
siRNA COP1 scanned on 07/21/10
|
cell line: LNCap
sirna transfection: siRNA COP1
|
|
| Sample_geo_accession | GSM689420
| | Sample_status | Public on Apr 08 2011
| | Sample_submission_date | Mar 11 2011
| | Sample_last_update_date | Apr 08 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | siRNA oligonucleotides (Dharmacon) were transfected with Lipofectamine2000 and LipofectamineRNAiMax (Invitrogen) into LNCaP cells. Cell lysates were prepared 48h after siRNA transfection.
| | Sample_growth_protocol_ch1 | LNCap cells were cultured overnight in serum-free medium.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total cellular RNA was prepared with a RNeasy Plus kit (Qiagen) and subject to DNAse I digestion.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | HGU 133 plus 2.0 arrays were hybridized according to the Affymetrix protocol
| | Sample_scan_protocol | HGU 133 plus 2.0 arrays were scanned according to the Affymetrix protocol
| | Sample_data_processing | Affymetrix HGU 133 plus 2.0 intensity signal CEL files were processed using the RMA algorithm as implemented in the 'affy' package from Bioconductor.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jinfeng,,Liu
| | Sample_contact_email | jinfengl@gene.com
| | Sample_contact_department | Bioinformatics and Computational Biology
| | Sample_contact_institute | Genentech Inc.
| | Sample_contact_address | 1 DNA Way, MS93
| | Sample_contact_city | South San Francisco
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 94080
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM689nnn/GSM689420/suppl/GSM689420.CEL.gz
| | Sample_series_id | GSE27914
| | Sample_data_row_count | 54675
| | |
|
GSM689421 | GPL570 |
|
BIO586230
|
siRNA COP1.ETV1 scanned on 07/21/10
|
cell line: LNCap
sirna transfection: siRNA COP1.ETV1
|
|
| Sample_geo_accession | GSM689421
| | Sample_status | Public on Apr 08 2011
| | Sample_submission_date | Mar 11 2011
| | Sample_last_update_date | Apr 08 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | siRNA oligonucleotides (Dharmacon) were transfected with Lipofectamine2000 and LipofectamineRNAiMax (Invitrogen) into LNCaP cells. Cell lysates were prepared 48h after siRNA transfection.
| | Sample_growth_protocol_ch1 | LNCap cells were cultured overnight in serum-free medium.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total cellular RNA was prepared with a RNeasy Plus kit (Qiagen) and subject to DNAse I digestion.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | HGU 133 plus 2.0 arrays were hybridized according to the Affymetrix protocol
| | Sample_scan_protocol | HGU 133 plus 2.0 arrays were scanned according to the Affymetrix protocol
| | Sample_data_processing | Affymetrix HGU 133 plus 2.0 intensity signal CEL files were processed using the RMA algorithm as implemented in the 'affy' package from Bioconductor.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jinfeng,,Liu
| | Sample_contact_email | jinfengl@gene.com
| | Sample_contact_department | Bioinformatics and Computational Biology
| | Sample_contact_institute | Genentech Inc.
| | Sample_contact_address | 1 DNA Way, MS93
| | Sample_contact_city | South San Francisco
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 94080
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM689nnn/GSM689421/suppl/GSM689421.CEL.gz
| | Sample_series_id | GSE27914
| | Sample_data_row_count | 54675
| | |
|
GSM689422 | GPL570 |
|
BIO588361
|
siRNA COP1.JUN scanned on 11/03/10
|
cell line: LNCap
sirna transfection: siRNA COP1.JUN
|
|
| Sample_geo_accession | GSM689422
| | Sample_status | Public on Apr 08 2011
| | Sample_submission_date | Mar 11 2011
| | Sample_last_update_date | Apr 08 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | siRNA oligonucleotides (Dharmacon) were transfected with Lipofectamine2000 and LipofectamineRNAiMax (Invitrogen) into LNCaP cells. Cell lysates were prepared 48h after siRNA transfection.
| | Sample_growth_protocol_ch1 | LNCap cells were cultured overnight in serum-free medium.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total cellular RNA was prepared with a RNeasy Plus kit (Qiagen) and subject to DNAse I digestion.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | HGU 133 plus 2.0 arrays were hybridized according to the Affymetrix protocol
| | Sample_scan_protocol | HGU 133 plus 2.0 arrays were scanned according to the Affymetrix protocol
| | Sample_data_processing | Affymetrix HGU 133 plus 2.0 intensity signal CEL files were processed using the RMA algorithm as implemented in the 'affy' package from Bioconductor.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jinfeng,,Liu
| | Sample_contact_email | jinfengl@gene.com
| | Sample_contact_department | Bioinformatics and Computational Biology
| | Sample_contact_institute | Genentech Inc.
| | Sample_contact_address | 1 DNA Way, MS93
| | Sample_contact_city | South San Francisco
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 94080
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM689nnn/GSM689422/suppl/GSM689422.CEL.gz
| | Sample_series_id | GSE27914
| | Sample_data_row_count | 54675
| | |
|
GSM689423 | GPL570 |
|
BIO586226
|
siRNA COP1 scanned on 07/21/10
|
cell line: LNCap
sirna transfection: siRNA COP1
|
|
| Sample_geo_accession | GSM689423
| | Sample_status | Public on Apr 08 2011
| | Sample_submission_date | Mar 11 2011
| | Sample_last_update_date | Apr 08 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | siRNA oligonucleotides (Dharmacon) were transfected with Lipofectamine2000 and LipofectamineRNAiMax (Invitrogen) into LNCaP cells. Cell lysates were prepared 48h after siRNA transfection.
| | Sample_growth_protocol_ch1 | LNCap cells were cultured overnight in serum-free medium.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total cellular RNA was prepared with a RNeasy Plus kit (Qiagen) and subject to DNAse I digestion.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | HGU 133 plus 2.0 arrays were hybridized according to the Affymetrix protocol
| | Sample_scan_protocol | HGU 133 plus 2.0 arrays were scanned according to the Affymetrix protocol
| | Sample_data_processing | Affymetrix HGU 133 plus 2.0 intensity signal CEL files were processed using the RMA algorithm as implemented in the 'affy' package from Bioconductor.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jinfeng,,Liu
| | Sample_contact_email | jinfengl@gene.com
| | Sample_contact_department | Bioinformatics and Computational Biology
| | Sample_contact_institute | Genentech Inc.
| | Sample_contact_address | 1 DNA Way, MS93
| | Sample_contact_city | South San Francisco
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 94080
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM689nnn/GSM689423/suppl/GSM689423.CEL.gz
| | Sample_series_id | GSE27914
| | Sample_data_row_count | 54675
| | |
|
GSM689424 | GPL570 |
|
BIO586231
|
siRNA COP1.ETV1 scanned on 07/21/10
|
cell line: LNCap
sirna transfection: siRNA COP1.ETV1
|
|
| Sample_geo_accession | GSM689424
| | Sample_status | Public on Apr 08 2011
| | Sample_submission_date | Mar 11 2011
| | Sample_last_update_date | Apr 08 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | siRNA oligonucleotides (Dharmacon) were transfected with Lipofectamine2000 and LipofectamineRNAiMax (Invitrogen) into LNCaP cells. Cell lysates were prepared 48h after siRNA transfection.
| | Sample_growth_protocol_ch1 | LNCap cells were cultured overnight in serum-free medium.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total cellular RNA was prepared with a RNeasy Plus kit (Qiagen) and subject to DNAse I digestion.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | HGU 133 plus 2.0 arrays were hybridized according to the Affymetrix protocol
| | Sample_scan_protocol | HGU 133 plus 2.0 arrays were scanned according to the Affymetrix protocol
| | Sample_data_processing | Affymetrix HGU 133 plus 2.0 intensity signal CEL files were processed using the RMA algorithm as implemented in the 'affy' package from Bioconductor.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jinfeng,,Liu
| | Sample_contact_email | jinfengl@gene.com
| | Sample_contact_department | Bioinformatics and Computational Biology
| | Sample_contact_institute | Genentech Inc.
| | Sample_contact_address | 1 DNA Way, MS93
| | Sample_contact_city | South San Francisco
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 94080
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM689nnn/GSM689424/suppl/GSM689424.CEL.gz
| | Sample_series_id | GSE27914
| | Sample_data_row_count | 54675
| | |
|
GSM689425 | GPL570 |
|
BIO588367
|
siRNA COP1.JUN scanned on 11/03/10
|
cell line: LNCap
sirna transfection: siRNA COP1.JUN
|
|
| Sample_geo_accession | GSM689425
| | Sample_status | Public on Apr 08 2011
| | Sample_submission_date | Mar 11 2011
| | Sample_last_update_date | Apr 08 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | siRNA oligonucleotides (Dharmacon) were transfected with Lipofectamine2000 and LipofectamineRNAiMax (Invitrogen) into LNCaP cells. Cell lysates were prepared 48h after siRNA transfection.
| | Sample_growth_protocol_ch1 | LNCap cells were cultured overnight in serum-free medium.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total cellular RNA was prepared with a RNeasy Plus kit (Qiagen) and subject to DNAse I digestion.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | HGU 133 plus 2.0 arrays were hybridized according to the Affymetrix protocol
| | Sample_scan_protocol | HGU 133 plus 2.0 arrays were scanned according to the Affymetrix protocol
| | Sample_data_processing | Affymetrix HGU 133 plus 2.0 intensity signal CEL files were processed using the RMA algorithm as implemented in the 'affy' package from Bioconductor.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jinfeng,,Liu
| | Sample_contact_email | jinfengl@gene.com
| | Sample_contact_department | Bioinformatics and Computational Biology
| | Sample_contact_institute | Genentech Inc.
| | Sample_contact_address | 1 DNA Way, MS93
| | Sample_contact_city | South San Francisco
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 94080
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM689nnn/GSM689425/suppl/GSM689425.CEL.gz
| | Sample_series_id | GSE27914
| | Sample_data_row_count | 54675
| | |
|
GSM689426 | GPL570 |
|
BIO586218
|
siRNA Control1 scanned on 07/21/10
|
cell line: LNCap
sirna transfection: siRNA Control1
|
|
| Sample_geo_accession | GSM689426
| | Sample_status | Public on Apr 08 2011
| | Sample_submission_date | Mar 11 2011
| | Sample_last_update_date | Apr 08 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | siRNA oligonucleotides (Dharmacon) were transfected with Lipofectamine2000 and LipofectamineRNAiMax (Invitrogen) into LNCaP cells. Cell lysates were prepared 48h after siRNA transfection.
| | Sample_growth_protocol_ch1 | LNCap cells were cultured overnight in serum-free medium.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total cellular RNA was prepared with a RNeasy Plus kit (Qiagen) and subject to DNAse I digestion.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | HGU 133 plus 2.0 arrays were hybridized according to the Affymetrix protocol
| | Sample_scan_protocol | HGU 133 plus 2.0 arrays were scanned according to the Affymetrix protocol
| | Sample_data_processing | Affymetrix HGU 133 plus 2.0 intensity signal CEL files were processed using the RMA algorithm as implemented in the 'affy' package from Bioconductor.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jinfeng,,Liu
| | Sample_contact_email | jinfengl@gene.com
| | Sample_contact_department | Bioinformatics and Computational Biology
| | Sample_contact_institute | Genentech Inc.
| | Sample_contact_address | 1 DNA Way, MS93
| | Sample_contact_city | South San Francisco
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 94080
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM689nnn/GSM689426/suppl/GSM689426.CEL.gz
| | Sample_series_id | GSE27914
| | Sample_data_row_count | 54675
| | |
|
GSM689427 | GPL570 |
|
BIO588366
|
siRNA COP1.JUN scanned on 11/03/10
|
cell line: LNCap
sirna transfection: siRNA COP1.JUN
|
|
| Sample_geo_accession | GSM689427
| | Sample_status | Public on Apr 08 2011
| | Sample_submission_date | Mar 11 2011
| | Sample_last_update_date | Apr 08 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | siRNA oligonucleotides (Dharmacon) were transfected with Lipofectamine2000 and LipofectamineRNAiMax (Invitrogen) into LNCaP cells. Cell lysates were prepared 48h after siRNA transfection.
| | Sample_growth_protocol_ch1 | LNCap cells were cultured overnight in serum-free medium.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total cellular RNA was prepared with a RNeasy Plus kit (Qiagen) and subject to DNAse I digestion.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | HGU 133 plus 2.0 arrays were hybridized according to the Affymetrix protocol
| | Sample_scan_protocol | HGU 133 plus 2.0 arrays were scanned according to the Affymetrix protocol
| | Sample_data_processing | Affymetrix HGU 133 plus 2.0 intensity signal CEL files were processed using the RMA algorithm as implemented in the 'affy' package from Bioconductor.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jinfeng,,Liu
| | Sample_contact_email | jinfengl@gene.com
| | Sample_contact_department | Bioinformatics and Computational Biology
| | Sample_contact_institute | Genentech Inc.
| | Sample_contact_address | 1 DNA Way, MS93
| | Sample_contact_city | South San Francisco
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 94080
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM689nnn/GSM689427/suppl/GSM689427.CEL.gz
| | Sample_series_id | GSE27914
| | Sample_data_row_count | 54675
| | |
|
GSM689428 | GPL570 |
|
BIO588356
|
siRNA Control2 scanned on 11/03/10
|
cell line: LNCap
sirna transfection: siRNA Control2
|
|
| Sample_geo_accession | GSM689428
| | Sample_status | Public on Apr 08 2011
| | Sample_submission_date | Mar 11 2011
| | Sample_last_update_date | Apr 08 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | siRNA oligonucleotides (Dharmacon) were transfected with Lipofectamine2000 and LipofectamineRNAiMax (Invitrogen) into LNCaP cells. Cell lysates were prepared 48h after siRNA transfection.
| | Sample_growth_protocol_ch1 | LNCap cells were cultured overnight in serum-free medium.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total cellular RNA was prepared with a RNeasy Plus kit (Qiagen) and subject to DNAse I digestion.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | HGU 133 plus 2.0 arrays were hybridized according to the Affymetrix protocol
| | Sample_scan_protocol | HGU 133 plus 2.0 arrays were scanned according to the Affymetrix protocol
| | Sample_data_processing | Affymetrix HGU 133 plus 2.0 intensity signal CEL files were processed using the RMA algorithm as implemented in the 'affy' package from Bioconductor.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jinfeng,,Liu
| | Sample_contact_email | jinfengl@gene.com
| | Sample_contact_department | Bioinformatics and Computational Biology
| | Sample_contact_institute | Genentech Inc.
| | Sample_contact_address | 1 DNA Way, MS93
| | Sample_contact_city | South San Francisco
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 94080
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM689nnn/GSM689428/suppl/GSM689428.CEL.gz
| | Sample_series_id | GSE27914
| | Sample_data_row_count | 54675
| | |
|
GSM689429 | GPL570 |
|
BIO586223
|
siRNA COP1 scanned on 07/21/10
|
cell line: LNCap
sirna transfection: siRNA COP1
|
|
| Sample_geo_accession | GSM689429
| | Sample_status | Public on Apr 08 2011
| | Sample_submission_date | Mar 11 2011
| | Sample_last_update_date | Apr 08 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | siRNA oligonucleotides (Dharmacon) were transfected with Lipofectamine2000 and LipofectamineRNAiMax (Invitrogen) into LNCaP cells. Cell lysates were prepared 48h after siRNA transfection.
| | Sample_growth_protocol_ch1 | LNCap cells were cultured overnight in serum-free medium.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total cellular RNA was prepared with a RNeasy Plus kit (Qiagen) and subject to DNAse I digestion.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | HGU 133 plus 2.0 arrays were hybridized according to the Affymetrix protocol
| | Sample_scan_protocol | HGU 133 plus 2.0 arrays were scanned according to the Affymetrix protocol
| | Sample_data_processing | Affymetrix HGU 133 plus 2.0 intensity signal CEL files were processed using the RMA algorithm as implemented in the 'affy' package from Bioconductor.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jinfeng,,Liu
| | Sample_contact_email | jinfengl@gene.com
| | Sample_contact_department | Bioinformatics and Computational Biology
| | Sample_contact_institute | Genentech Inc.
| | Sample_contact_address | 1 DNA Way, MS93
| | Sample_contact_city | South San Francisco
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 94080
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM689nnn/GSM689429/suppl/GSM689429.CEL.gz
| | Sample_series_id | GSE27914
| | Sample_data_row_count | 54675
| | |
|
GSM689430 | GPL570 |
|
BIO586228
|
siRNA COP1.ETV1 scanned on 07/21/10
|
cell line: LNCap
sirna transfection: siRNA COP1.ETV1
|
|
| Sample_geo_accession | GSM689430
| | Sample_status | Public on Apr 08 2011
| | Sample_submission_date | Mar 11 2011
| | Sample_last_update_date | Apr 08 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | siRNA oligonucleotides (Dharmacon) were transfected with Lipofectamine2000 and LipofectamineRNAiMax (Invitrogen) into LNCaP cells. Cell lysates were prepared 48h after siRNA transfection.
| | Sample_growth_protocol_ch1 | LNCap cells were cultured overnight in serum-free medium.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total cellular RNA was prepared with a RNeasy Plus kit (Qiagen) and subject to DNAse I digestion.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | HGU 133 plus 2.0 arrays were hybridized according to the Affymetrix protocol
| | Sample_scan_protocol | HGU 133 plus 2.0 arrays were scanned according to the Affymetrix protocol
| | Sample_data_processing | Affymetrix HGU 133 plus 2.0 intensity signal CEL files were processed using the RMA algorithm as implemented in the 'affy' package from Bioconductor.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jinfeng,,Liu
| | Sample_contact_email | jinfengl@gene.com
| | Sample_contact_department | Bioinformatics and Computational Biology
| | Sample_contact_institute | Genentech Inc.
| | Sample_contact_address | 1 DNA Way, MS93
| | Sample_contact_city | South San Francisco
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 94080
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM689nnn/GSM689430/suppl/GSM689430.CEL.gz
| | Sample_series_id | GSE27914
| | Sample_data_row_count | 54675
| | |
|
GSM689431 | GPL570 |
|
BIO588364
|
siRNA COP1.JUN.ETV1 scanned on 11/03/10
|
cell line: LNCap
sirna transfection: siRNA COP1.JUN.ETV1
|
|
| Sample_geo_accession | GSM689431
| | Sample_status | Public on Apr 08 2011
| | Sample_submission_date | Mar 11 2011
| | Sample_last_update_date | Apr 08 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | siRNA oligonucleotides (Dharmacon) were transfected with Lipofectamine2000 and LipofectamineRNAiMax (Invitrogen) into LNCaP cells. Cell lysates were prepared 48h after siRNA transfection.
| | Sample_growth_protocol_ch1 | LNCap cells were cultured overnight in serum-free medium.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total cellular RNA was prepared with a RNeasy Plus kit (Qiagen) and subject to DNAse I digestion.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | HGU 133 plus 2.0 arrays were hybridized according to the Affymetrix protocol
| | Sample_scan_protocol | HGU 133 plus 2.0 arrays were scanned according to the Affymetrix protocol
| | Sample_data_processing | Affymetrix HGU 133 plus 2.0 intensity signal CEL files were processed using the RMA algorithm as implemented in the 'affy' package from Bioconductor.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jinfeng,,Liu
| | Sample_contact_email | jinfengl@gene.com
| | Sample_contact_department | Bioinformatics and Computational Biology
| | Sample_contact_institute | Genentech Inc.
| | Sample_contact_address | 1 DNA Way, MS93
| | Sample_contact_city | South San Francisco
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 94080
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM689nnn/GSM689431/suppl/GSM689431.CEL.gz
| | Sample_series_id | GSE27914
| | Sample_data_row_count | 54675
| | |
|
GSM689432 | GPL570 |
|
BIO588358
|
siRNA Control2 scanned on 11/03/10
|
cell line: LNCap
sirna transfection: siRNA Control2
|
|
| Sample_geo_accession | GSM689432
| | Sample_status | Public on Apr 08 2011
| | Sample_submission_date | Mar 11 2011
| | Sample_last_update_date | Apr 08 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | siRNA oligonucleotides (Dharmacon) were transfected with Lipofectamine2000 and LipofectamineRNAiMax (Invitrogen) into LNCaP cells. Cell lysates were prepared 48h after siRNA transfection.
| | Sample_growth_protocol_ch1 | LNCap cells were cultured overnight in serum-free medium.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total cellular RNA was prepared with a RNeasy Plus kit (Qiagen) and subject to DNAse I digestion.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | HGU 133 plus 2.0 arrays were hybridized according to the Affymetrix protocol
| | Sample_scan_protocol | HGU 133 plus 2.0 arrays were scanned according to the Affymetrix protocol
| | Sample_data_processing | Affymetrix HGU 133 plus 2.0 intensity signal CEL files were processed using the RMA algorithm as implemented in the 'affy' package from Bioconductor.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jinfeng,,Liu
| | Sample_contact_email | jinfengl@gene.com
| | Sample_contact_department | Bioinformatics and Computational Biology
| | Sample_contact_institute | Genentech Inc.
| | Sample_contact_address | 1 DNA Way, MS93
| | Sample_contact_city | South San Francisco
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 94080
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM689nnn/GSM689432/suppl/GSM689432.CEL.gz
| | Sample_series_id | GSE27914
| | Sample_data_row_count | 54675
| | |
|
GSM689433 | GPL570 |
|
BIO586220
|
siRNA Control1 scanned on 07/21/10
|
cell line: LNCap
sirna transfection: siRNA Control1
|
|
| Sample_geo_accession | GSM689433
| | Sample_status | Public on Apr 08 2011
| | Sample_submission_date | Mar 11 2011
| | Sample_last_update_date | Apr 08 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | siRNA oligonucleotides (Dharmacon) were transfected with Lipofectamine2000 and LipofectamineRNAiMax (Invitrogen) into LNCaP cells. Cell lysates were prepared 48h after siRNA transfection.
| | Sample_growth_protocol_ch1 | LNCap cells were cultured overnight in serum-free medium.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total cellular RNA was prepared with a RNeasy Plus kit (Qiagen) and subject to DNAse I digestion.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | HGU 133 plus 2.0 arrays were hybridized according to the Affymetrix protocol
| | Sample_scan_protocol | HGU 133 plus 2.0 arrays were scanned according to the Affymetrix protocol
| | Sample_data_processing | Affymetrix HGU 133 plus 2.0 intensity signal CEL files were processed using the RMA algorithm as implemented in the 'affy' package from Bioconductor.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jinfeng,,Liu
| | Sample_contact_email | jinfengl@gene.com
| | Sample_contact_department | Bioinformatics and Computational Biology
| | Sample_contact_institute | Genentech Inc.
| | Sample_contact_address | 1 DNA Way, MS93
| | Sample_contact_city | South San Francisco
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 94080
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM689nnn/GSM689433/suppl/GSM689433.CEL.gz
| | Sample_series_id | GSE27914
| | Sample_data_row_count | 54675
| | |
|
GSM689434 | GPL570 |
|
BIO586221
|
siRNA Control1 scanned on 07/21/10
|
cell line: LNCap
sirna transfection: siRNA Control1
|
|
| Sample_geo_accession | GSM689434
| | Sample_status | Public on Apr 08 2011
| | Sample_submission_date | Mar 11 2011
| | Sample_last_update_date | Apr 08 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | siRNA oligonucleotides (Dharmacon) were transfected with Lipofectamine2000 and LipofectamineRNAiMax (Invitrogen) into LNCaP cells. Cell lysates were prepared 48h after siRNA transfection.
| | Sample_growth_protocol_ch1 | LNCap cells were cultured overnight in serum-free medium.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total cellular RNA was prepared with a RNeasy Plus kit (Qiagen) and subject to DNAse I digestion.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | HGU 133 plus 2.0 arrays were hybridized according to the Affymetrix protocol
| | Sample_scan_protocol | HGU 133 plus 2.0 arrays were scanned according to the Affymetrix protocol
| | Sample_data_processing | Affymetrix HGU 133 plus 2.0 intensity signal CEL files were processed using the RMA algorithm as implemented in the 'affy' package from Bioconductor.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jinfeng,,Liu
| | Sample_contact_email | jinfengl@gene.com
| | Sample_contact_department | Bioinformatics and Computational Biology
| | Sample_contact_institute | Genentech Inc.
| | Sample_contact_address | 1 DNA Way, MS93
| | Sample_contact_city | South San Francisco
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 94080
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM689nnn/GSM689434/suppl/GSM689434.CEL.gz
| | Sample_series_id | GSE27914
| | Sample_data_row_count | 54675
| | |
|
GSM689435 | GPL570 |
|
BIO588357
|
siRNA Control2 scanned on 11/03/10
|
cell line: LNCap
sirna transfection: siRNA Control2
|
|
| Sample_geo_accession | GSM689435
| | Sample_status | Public on Apr 08 2011
| | Sample_submission_date | Mar 11 2011
| | Sample_last_update_date | Apr 08 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | siRNA oligonucleotides (Dharmacon) were transfected with Lipofectamine2000 and LipofectamineRNAiMax (Invitrogen) into LNCaP cells. Cell lysates were prepared 48h after siRNA transfection.
| | Sample_growth_protocol_ch1 | LNCap cells were cultured overnight in serum-free medium.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total cellular RNA was prepared with a RNeasy Plus kit (Qiagen) and subject to DNAse I digestion.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | HGU 133 plus 2.0 arrays were hybridized according to the Affymetrix protocol
| | Sample_scan_protocol | HGU 133 plus 2.0 arrays were scanned according to the Affymetrix protocol
| | Sample_data_processing | Affymetrix HGU 133 plus 2.0 intensity signal CEL files were processed using the RMA algorithm as implemented in the 'affy' package from Bioconductor.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jinfeng,,Liu
| | Sample_contact_email | jinfengl@gene.com
| | Sample_contact_department | Bioinformatics and Computational Biology
| | Sample_contact_institute | Genentech Inc.
| | Sample_contact_address | 1 DNA Way, MS93
| | Sample_contact_city | South San Francisco
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 94080
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM689nnn/GSM689435/suppl/GSM689435.CEL.gz
| | Sample_series_id | GSE27914
| | Sample_data_row_count | 54675
| | |
|
GSM689436 | GPL570 |
|
BIO586224
|
siRNA COP1 scanned on 07/21/10
|
cell line: LNCap
sirna transfection: siRNA COP1
|
|
| Sample_geo_accession | GSM689436
| | Sample_status | Public on Apr 08 2011
| | Sample_submission_date | Mar 11 2011
| | Sample_last_update_date | Apr 08 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | siRNA oligonucleotides (Dharmacon) were transfected with Lipofectamine2000 and LipofectamineRNAiMax (Invitrogen) into LNCaP cells. Cell lysates were prepared 48h after siRNA transfection.
| | Sample_growth_protocol_ch1 | LNCap cells were cultured overnight in serum-free medium.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total cellular RNA was prepared with a RNeasy Plus kit (Qiagen) and subject to DNAse I digestion.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | HGU 133 plus 2.0 arrays were hybridized according to the Affymetrix protocol
| | Sample_scan_protocol | HGU 133 plus 2.0 arrays were scanned according to the Affymetrix protocol
| | Sample_data_processing | Affymetrix HGU 133 plus 2.0 intensity signal CEL files were processed using the RMA algorithm as implemented in the 'affy' package from Bioconductor.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jinfeng,,Liu
| | Sample_contact_email | jinfengl@gene.com
| | Sample_contact_department | Bioinformatics and Computational Biology
| | Sample_contact_institute | Genentech Inc.
| | Sample_contact_address | 1 DNA Way, MS93
| | Sample_contact_city | South San Francisco
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 94080
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM689nnn/GSM689436/suppl/GSM689436.CEL.gz
| | Sample_series_id | GSE27914
| | Sample_data_row_count | 54675
| | |
|
GSM689437 | GPL570 |
|
BIO586233
|
siRNA COP1.ETV1 scanned on 07/21/10
|
cell line: LNCap
sirna transfection: siRNA COP1.ETV1
|
|
| Sample_geo_accession | GSM689437
| | Sample_status | Public on Apr 08 2011
| | Sample_submission_date | Mar 11 2011
| | Sample_last_update_date | Apr 08 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | siRNA oligonucleotides (Dharmacon) were transfected with Lipofectamine2000 and LipofectamineRNAiMax (Invitrogen) into LNCaP cells. Cell lysates were prepared 48h after siRNA transfection.
| | Sample_growth_protocol_ch1 | LNCap cells were cultured overnight in serum-free medium.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total cellular RNA was prepared with a RNeasy Plus kit (Qiagen) and subject to DNAse I digestion.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | HGU 133 plus 2.0 arrays were hybridized according to the Affymetrix protocol
| | Sample_scan_protocol | HGU 133 plus 2.0 arrays were scanned according to the Affymetrix protocol
| | Sample_data_processing | Affymetrix HGU 133 plus 2.0 intensity signal CEL files were processed using the RMA algorithm as implemented in the 'affy' package from Bioconductor.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jinfeng,,Liu
| | Sample_contact_email | jinfengl@gene.com
| | Sample_contact_department | Bioinformatics and Computational Biology
| | Sample_contact_institute | Genentech Inc.
| | Sample_contact_address | 1 DNA Way, MS93
| | Sample_contact_city | South San Francisco
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 94080
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM689nnn/GSM689437/suppl/GSM689437.CEL.gz
| | Sample_series_id | GSE27914
| | Sample_data_row_count | 54675
| | |
|
GSM689438 | GPL570 |
|
BIO588365
|
siRNA COP1.JUN.ETV1 scanned on 11/03/10
|
cell line: LNCap
sirna transfection: siRNA COP1.JUN.ETV1
|
|
| Sample_geo_accession | GSM689438
| | Sample_status | Public on Apr 08 2011
| | Sample_submission_date | Mar 11 2011
| | Sample_last_update_date | Apr 08 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | siRNA oligonucleotides (Dharmacon) were transfected with Lipofectamine2000 and LipofectamineRNAiMax (Invitrogen) into LNCaP cells. Cell lysates were prepared 48h after siRNA transfection.
| | Sample_growth_protocol_ch1 | LNCap cells were cultured overnight in serum-free medium.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total cellular RNA was prepared with a RNeasy Plus kit (Qiagen) and subject to DNAse I digestion.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | HGU 133 plus 2.0 arrays were hybridized according to the Affymetrix protocol
| | Sample_scan_protocol | HGU 133 plus 2.0 arrays were scanned according to the Affymetrix protocol
| | Sample_data_processing | Affymetrix HGU 133 plus 2.0 intensity signal CEL files were processed using the RMA algorithm as implemented in the 'affy' package from Bioconductor.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jinfeng,,Liu
| | Sample_contact_email | jinfengl@gene.com
| | Sample_contact_department | Bioinformatics and Computational Biology
| | Sample_contact_institute | Genentech Inc.
| | Sample_contact_address | 1 DNA Way, MS93
| | Sample_contact_city | South San Francisco
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 94080
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM689nnn/GSM689438/suppl/GSM689438.CEL.gz
| | Sample_series_id | GSE27914
| | Sample_data_row_count | 54675
| | |
|
GSM689439 | GPL570 |
|
BIO588368
|
siRNA COP1.JUN scanned on 11/03/10
|
cell line: LNCap
sirna transfection: siRNA COP1.JUN
|
|
| Sample_geo_accession | GSM689439
| | Sample_status | Public on Apr 08 2011
| | Sample_submission_date | Mar 11 2011
| | Sample_last_update_date | Apr 08 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | siRNA oligonucleotides (Dharmacon) were transfected with Lipofectamine2000 and LipofectamineRNAiMax (Invitrogen) into LNCaP cells. Cell lysates were prepared 48h after siRNA transfection.
| | Sample_growth_protocol_ch1 | LNCap cells were cultured overnight in serum-free medium.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total cellular RNA was prepared with a RNeasy Plus kit (Qiagen) and subject to DNAse I digestion.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | HGU 133 plus 2.0 arrays were hybridized according to the Affymetrix protocol
| | Sample_scan_protocol | HGU 133 plus 2.0 arrays were scanned according to the Affymetrix protocol
| | Sample_data_processing | Affymetrix HGU 133 plus 2.0 intensity signal CEL files were processed using the RMA algorithm as implemented in the 'affy' package from Bioconductor.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jinfeng,,Liu
| | Sample_contact_email | jinfengl@gene.com
| | Sample_contact_department | Bioinformatics and Computational Biology
| | Sample_contact_institute | Genentech Inc.
| | Sample_contact_address | 1 DNA Way, MS93
| | Sample_contact_city | South San Francisco
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 94080
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM689nnn/GSM689439/suppl/GSM689439.CEL.gz
| | Sample_series_id | GSE27914
| | Sample_data_row_count | 54675
| | |
|
GSM689440 | GPL570 |
|
BIO588362
|
siRNA COP1.JUN scanned on 11/03/10
|
cell line: LNCap
sirna transfection: siRNA COP1.JUN
|
|
| Sample_geo_accession | GSM689440
| | Sample_status | Public on Apr 08 2011
| | Sample_submission_date | Mar 11 2011
| | Sample_last_update_date | Apr 08 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | siRNA oligonucleotides (Dharmacon) were transfected with Lipofectamine2000 and LipofectamineRNAiMax (Invitrogen) into LNCaP cells. Cell lysates were prepared 48h after siRNA transfection.
| | Sample_growth_protocol_ch1 | LNCap cells were cultured overnight in serum-free medium.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total cellular RNA was prepared with a RNeasy Plus kit (Qiagen) and subject to DNAse I digestion.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | HGU 133 plus 2.0 arrays were hybridized according to the Affymetrix protocol
| | Sample_scan_protocol | HGU 133 plus 2.0 arrays were scanned according to the Affymetrix protocol
| | Sample_data_processing | Affymetrix HGU 133 plus 2.0 intensity signal CEL files were processed using the RMA algorithm as implemented in the 'affy' package from Bioconductor.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jinfeng,,Liu
| | Sample_contact_email | jinfengl@gene.com
| | Sample_contact_department | Bioinformatics and Computational Biology
| | Sample_contact_institute | Genentech Inc.
| | Sample_contact_address | 1 DNA Way, MS93
| | Sample_contact_city | South San Francisco
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 94080
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM689nnn/GSM689440/suppl/GSM689440.CEL.gz
| | Sample_series_id | GSE27914
| | Sample_data_row_count | 54675
| | |
|
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