Search results for the GEO ID: GSE27928 |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM690689 | GPL570 |
|
CD4 TILs patient 1
|
pure CD4 TILs from lymph node biopsie
|
patient: treatment naive patient with FL at diagnosis
tissue type: lymph node
cell type: pure CD4 TILs
|
Gene expression data from highly pure TILs of treatment naive FL patient
|
Sample_geo_accession | GSM690689
| Sample_status | Public on Feb 07 2013
| Sample_submission_date | Mar 14 2011
| Sample_last_update_date | Feb 07 2013
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNAs were extracted using RNeasy Mini Kit (Qiagen) according to manufacturer’s instruction.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix Gene Chip Scanner 30007G
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| Sample_platform_id | GPL570
| Sample_contact_name | Shahryar,,Kiaii
| Sample_contact_email | s.kiaii@qmul.ac.uk
| Sample_contact_fax | 0044-2078823891
| Sample_contact_department | Centre of Haemato-Oncology
| Sample_contact_institute | Barts Cancer Institute, Queen Mary University, School of Medicine and Dentistry
| Sample_contact_address | Charterhouse Square
| Sample_contact_city | London
| Sample_contact_zip/postal_code | EC1M 6BQ
| Sample_contact_country | United Kingdom
| Sample_contact_web_link | http://uk-chs-lint01.qmcr.qmul.ac.uk/
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM690nnn/GSM690689/suppl/GSM690689_R1979CD4.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM690nnn/GSM690689/suppl/GSM690689_R1979CD4.mas5.CHP.gz
| Sample_series_id | GSE27928
| Sample_data_row_count | 54675
| |
|
GSM690690 | GPL570 |
|
CD4 TILs patient 2
|
pure CD4 TILs from lymph node biopsie
|
patient: treatment naive patient with FL at diagnosis
tissue type: lymph node
cell type: pure CD4 TILs
|
Gene expression data from highly pure TILs of treatment naive FL patient
|
Sample_geo_accession | GSM690690
| Sample_status | Public on Feb 07 2013
| Sample_submission_date | Mar 14 2011
| Sample_last_update_date | Feb 07 2013
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNAs were extracted using RNeasy Mini Kit (Qiagen) according to manufacturer’s instruction.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix Gene Chip Scanner 30007G
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| Sample_platform_id | GPL570
| Sample_contact_name | Shahryar,,Kiaii
| Sample_contact_email | s.kiaii@qmul.ac.uk
| Sample_contact_fax | 0044-2078823891
| Sample_contact_department | Centre of Haemato-Oncology
| Sample_contact_institute | Barts Cancer Institute, Queen Mary University, School of Medicine and Dentistry
| Sample_contact_address | Charterhouse Square
| Sample_contact_city | London
| Sample_contact_zip/postal_code | EC1M 6BQ
| Sample_contact_country | United Kingdom
| Sample_contact_web_link | http://uk-chs-lint01.qmcr.qmul.ac.uk/
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM690nnn/GSM690690/suppl/GSM690690_R4313CD4.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM690nnn/GSM690690/suppl/GSM690690_R4313CD4.mas5.CHP.gz
| Sample_series_id | GSE27928
| Sample_data_row_count | 54675
| |
|
GSM690691 | GPL570 |
|
CD4 TILs patient 3
|
pure CD4 TILs from lymph node biopsie
|
patient: treatment naive patient with FL at diagnosis
tissue type: lymph node
cell type: pure CD4 TILs
|
Gene expression data from highly pure TILs of treatment naive FL patient
|
Sample_geo_accession | GSM690691
| Sample_status | Public on Feb 07 2013
| Sample_submission_date | Mar 14 2011
| Sample_last_update_date | Feb 07 2013
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNAs were extracted using RNeasy Mini Kit (Qiagen) according to manufacturer’s instruction.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix Gene Chip Scanner 30007G
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| Sample_platform_id | GPL570
| Sample_contact_name | Shahryar,,Kiaii
| Sample_contact_email | s.kiaii@qmul.ac.uk
| Sample_contact_fax | 0044-2078823891
| Sample_contact_department | Centre of Haemato-Oncology
| Sample_contact_institute | Barts Cancer Institute, Queen Mary University, School of Medicine and Dentistry
| Sample_contact_address | Charterhouse Square
| Sample_contact_city | London
| Sample_contact_zip/postal_code | EC1M 6BQ
| Sample_contact_country | United Kingdom
| Sample_contact_web_link | http://uk-chs-lint01.qmcr.qmul.ac.uk/
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM690nnn/GSM690691/suppl/GSM690691_R8399CD4.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM690nnn/GSM690691/suppl/GSM690691_R8399CD4.mas5.CHP.gz
| Sample_series_id | GSE27928
| Sample_data_row_count | 54675
| |
|
GSM690692 | GPL570 |
|
CD4 TILs patient 4
|
pure CD4 TILs from lymph node biopsie
|
patient: treatment naive patient with FL at diagnosis
tissue type: lymph node
cell type: pure CD4 TILs
|
Gene expression data from highly pure TILs of treatment naive FL patient
|
Sample_geo_accession | GSM690692
| Sample_status | Public on Feb 07 2013
| Sample_submission_date | Mar 14 2011
| Sample_last_update_date | Feb 07 2013
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNAs were extracted using RNeasy Mini Kit (Qiagen) according to manufacturer’s instruction.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix Gene Chip Scanner 30007G
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| Sample_platform_id | GPL570
| Sample_contact_name | Shahryar,,Kiaii
| Sample_contact_email | s.kiaii@qmul.ac.uk
| Sample_contact_fax | 0044-2078823891
| Sample_contact_department | Centre of Haemato-Oncology
| Sample_contact_institute | Barts Cancer Institute, Queen Mary University, School of Medicine and Dentistry
| Sample_contact_address | Charterhouse Square
| Sample_contact_city | London
| Sample_contact_zip/postal_code | EC1M 6BQ
| Sample_contact_country | United Kingdom
| Sample_contact_web_link | http://uk-chs-lint01.qmcr.qmul.ac.uk/
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM690nnn/GSM690692/suppl/GSM690692_T2121CD4.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM690nnn/GSM690692/suppl/GSM690692_T2121CD4.mas5.CHP.gz
| Sample_series_id | GSE27928
| Sample_data_row_count | 54675
| |
|
GSM690693 | GPL570 |
|
CD4 TILs patient 5
|
pure CD4 TILs from lymph node biopsie
|
patient: treatment naive patient with FL at diagnosis
tissue type: lymph node
cell type: pure CD4 TILs
|
Gene expression data from highly pure TILs of treatment naive FL patient
|
Sample_geo_accession | GSM690693
| Sample_status | Public on Feb 07 2013
| Sample_submission_date | Mar 14 2011
| Sample_last_update_date | Feb 07 2013
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNAs were extracted using RNeasy Mini Kit (Qiagen) according to manufacturer’s instruction.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix Gene Chip Scanner 30007G
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| Sample_platform_id | GPL570
| Sample_contact_name | Shahryar,,Kiaii
| Sample_contact_email | s.kiaii@qmul.ac.uk
| Sample_contact_fax | 0044-2078823891
| Sample_contact_department | Centre of Haemato-Oncology
| Sample_contact_institute | Barts Cancer Institute, Queen Mary University, School of Medicine and Dentistry
| Sample_contact_address | Charterhouse Square
| Sample_contact_city | London
| Sample_contact_zip/postal_code | EC1M 6BQ
| Sample_contact_country | United Kingdom
| Sample_contact_web_link | http://uk-chs-lint01.qmcr.qmul.ac.uk/
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM690nnn/GSM690693/suppl/GSM690693_R2299CD4.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM690nnn/GSM690693/suppl/GSM690693_R2299CD4.mas5.CHP.gz
| Sample_series_id | GSE27928
| Sample_data_row_count | 54675
| |
|
GSM690694 | GPL570 |
|
CD4 TILs patient 6
|
pure CD4 TILs from lymph node biopsie
|
patient: treatment naive patient with FL at diagnosis
tissue type: lymph node
cell type: pure CD4 TILs
|
Gene expression data from highly pure TILs of treatment naive FL patient
|
Sample_geo_accession | GSM690694
| Sample_status | Public on Feb 07 2013
| Sample_submission_date | Mar 14 2011
| Sample_last_update_date | Feb 07 2013
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNAs were extracted using RNeasy Mini Kit (Qiagen) according to manufacturer’s instruction.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix Gene Chip Scanner 30007G
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| Sample_platform_id | GPL570
| Sample_contact_name | Shahryar,,Kiaii
| Sample_contact_email | s.kiaii@qmul.ac.uk
| Sample_contact_fax | 0044-2078823891
| Sample_contact_department | Centre of Haemato-Oncology
| Sample_contact_institute | Barts Cancer Institute, Queen Mary University, School of Medicine and Dentistry
| Sample_contact_address | Charterhouse Square
| Sample_contact_city | London
| Sample_contact_zip/postal_code | EC1M 6BQ
| Sample_contact_country | United Kingdom
| Sample_contact_web_link | http://uk-chs-lint01.qmcr.qmul.ac.uk/
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM690nnn/GSM690694/suppl/GSM690694_R4804CD4.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM690nnn/GSM690694/suppl/GSM690694_R4804CD4.mas5.CHP.gz
| Sample_series_id | GSE27928
| Sample_data_row_count | 54675
| |
|
GSM690695 | GPL570 |
|
CD4 TILs patient 7
|
pure CD4 TILs from lymph node biopsie
|
patient: treatment naive patient with FL at diagnosis
tissue type: lymph node
cell type: pure CD4 TILs
|
Gene expression data from highly pure TILs of treatment naive FL patient
|
Sample_geo_accession | GSM690695
| Sample_status | Public on Feb 07 2013
| Sample_submission_date | Mar 14 2011
| Sample_last_update_date | Feb 07 2013
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNAs were extracted using RNeasy Mini Kit (Qiagen) according to manufacturer’s instruction.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix Gene Chip Scanner 30007G
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| Sample_platform_id | GPL570
| Sample_contact_name | Shahryar,,Kiaii
| Sample_contact_email | s.kiaii@qmul.ac.uk
| Sample_contact_fax | 0044-2078823891
| Sample_contact_department | Centre of Haemato-Oncology
| Sample_contact_institute | Barts Cancer Institute, Queen Mary University, School of Medicine and Dentistry
| Sample_contact_address | Charterhouse Square
| Sample_contact_city | London
| Sample_contact_zip/postal_code | EC1M 6BQ
| Sample_contact_country | United Kingdom
| Sample_contact_web_link | http://uk-chs-lint01.qmcr.qmul.ac.uk/
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM690nnn/GSM690695/suppl/GSM690695_R8403CD4.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM690nnn/GSM690695/suppl/GSM690695_R8403CD4.mas5.CHP.gz
| Sample_series_id | GSE27928
| Sample_data_row_count | 54675
| |
|
GSM690696 | GPL570 |
|
CD4 TILs patient 8
|
pure CD4 TILs from lymph node biopsie
|
patient: treatment naive patient with FL at diagnosis
tissue type: lymph node
cell type: pure CD4 TILs
|
Gene expression data from highly pure TILs of treatment naive FL patient
|
Sample_geo_accession | GSM690696
| Sample_status | Public on Feb 07 2013
| Sample_submission_date | Mar 14 2011
| Sample_last_update_date | Feb 07 2013
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNAs were extracted using RNeasy Mini Kit (Qiagen) according to manufacturer’s instruction.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix Gene Chip Scanner 30007G
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| Sample_platform_id | GPL570
| Sample_contact_name | Shahryar,,Kiaii
| Sample_contact_email | s.kiaii@qmul.ac.uk
| Sample_contact_fax | 0044-2078823891
| Sample_contact_department | Centre of Haemato-Oncology
| Sample_contact_institute | Barts Cancer Institute, Queen Mary University, School of Medicine and Dentistry
| Sample_contact_address | Charterhouse Square
| Sample_contact_city | London
| Sample_contact_zip/postal_code | EC1M 6BQ
| Sample_contact_country | United Kingdom
| Sample_contact_web_link | http://uk-chs-lint01.qmcr.qmul.ac.uk/
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM690nnn/GSM690696/suppl/GSM690696_R9703CD4.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM690nnn/GSM690696/suppl/GSM690696_R9703CD4.mas5.CHP.gz
| Sample_series_id | GSE27928
| Sample_data_row_count | 54675
| |
|
GSM690697 | GPL570 |
|
CD4 TILs patient 9
|
pure CD4 TILs from lymph node biopsie
|
patient: treatment naive patient with FL at diagnosis
tissue type: lymph node
cell type: pure CD4 TILs
|
Gene expression data from highly pure TILs of treatment naive FL patient
|
Sample_geo_accession | GSM690697
| Sample_status | Public on Feb 07 2013
| Sample_submission_date | Mar 14 2011
| Sample_last_update_date | Feb 07 2013
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNAs were extracted using RNeasy Mini Kit (Qiagen) according to manufacturer’s instruction.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix Gene Chip Scanner 30007G
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| Sample_platform_id | GPL570
| Sample_contact_name | Shahryar,,Kiaii
| Sample_contact_email | s.kiaii@qmul.ac.uk
| Sample_contact_fax | 0044-2078823891
| Sample_contact_department | Centre of Haemato-Oncology
| Sample_contact_institute | Barts Cancer Institute, Queen Mary University, School of Medicine and Dentistry
| Sample_contact_address | Charterhouse Square
| Sample_contact_city | London
| Sample_contact_zip/postal_code | EC1M 6BQ
| Sample_contact_country | United Kingdom
| Sample_contact_web_link | http://uk-chs-lint01.qmcr.qmul.ac.uk/
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM690nnn/GSM690697/suppl/GSM690697_R0986CD4.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM690nnn/GSM690697/suppl/GSM690697_R0986CD4.mas5.CHP.gz
| Sample_series_id | GSE27928
| Sample_data_row_count | 54675
| |
|
GSM690698 | GPL570 |
|
CD4 TILs patient 10
|
pure CD4 TILs from lymph node biopsie
|
patient: treatment naive patient with FL at diagnosis
tissue type: lymph node
cell type: pure CD4 TILs
|
Gene expression data from highly pure TILs of treatment naive FL patient
|
Sample_geo_accession | GSM690698
| Sample_status | Public on Feb 07 2013
| Sample_submission_date | Mar 14 2011
| Sample_last_update_date | Feb 07 2013
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNAs were extracted using RNeasy Mini Kit (Qiagen) according to manufacturer’s instruction.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix Gene Chip Scanner 30007G
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| Sample_platform_id | GPL570
| Sample_contact_name | Shahryar,,Kiaii
| Sample_contact_email | s.kiaii@qmul.ac.uk
| Sample_contact_fax | 0044-2078823891
| Sample_contact_department | Centre of Haemato-Oncology
| Sample_contact_institute | Barts Cancer Institute, Queen Mary University, School of Medicine and Dentistry
| Sample_contact_address | Charterhouse Square
| Sample_contact_city | London
| Sample_contact_zip/postal_code | EC1M 6BQ
| Sample_contact_country | United Kingdom
| Sample_contact_web_link | http://uk-chs-lint01.qmcr.qmul.ac.uk/
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM690nnn/GSM690698/suppl/GSM690698_F9019CD4.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM690nnn/GSM690698/suppl/GSM690698_F9019CD4.mas5.CHP.gz
| Sample_series_id | GSE27928
| Sample_data_row_count | 54675
| |
|
GSM690699 | GPL570 |
|
CD4 TILs patient 11
|
pure CD4 TILs from lymph node biopsie
|
patient: treatment naive patient with FL at diagnosis
tissue type: lymph node
cell type: pure CD4 TILs
|
Gene expression data from highly pure TILs of treatment naive FL patient
|
Sample_geo_accession | GSM690699
| Sample_status | Public on Feb 07 2013
| Sample_submission_date | Mar 14 2011
| Sample_last_update_date | Feb 07 2013
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNAs were extracted using RNeasy Mini Kit (Qiagen) according to manufacturer’s instruction.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix Gene Chip Scanner 30007G
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| Sample_platform_id | GPL570
| Sample_contact_name | Shahryar,,Kiaii
| Sample_contact_email | s.kiaii@qmul.ac.uk
| Sample_contact_fax | 0044-2078823891
| Sample_contact_department | Centre of Haemato-Oncology
| Sample_contact_institute | Barts Cancer Institute, Queen Mary University, School of Medicine and Dentistry
| Sample_contact_address | Charterhouse Square
| Sample_contact_city | London
| Sample_contact_zip/postal_code | EC1M 6BQ
| Sample_contact_country | United Kingdom
| Sample_contact_web_link | http://uk-chs-lint01.qmcr.qmul.ac.uk/
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM690nnn/GSM690699/suppl/GSM690699_R8929CD4.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM690nnn/GSM690699/suppl/GSM690699_R8929CD4.mas5.CHP.gz
| Sample_series_id | GSE27928
| Sample_data_row_count | 54675
| |
|
GSM690700 | GPL570 |
|
CD4 TILs patient 12
|
pure CD4 TILs from lymph node biopsie
|
patient: treatment naive patient with FL at diagnosis
tissue type: lymph node
cell type: pure CD4 TILs
|
Gene expression data from highly pure TILs of treatment naive FL patient
|
Sample_geo_accession | GSM690700
| Sample_status | Public on Feb 07 2013
| Sample_submission_date | Mar 14 2011
| Sample_last_update_date | Feb 07 2013
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNAs were extracted using RNeasy Mini Kit (Qiagen) according to manufacturer’s instruction.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix Gene Chip Scanner 30007G
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| Sample_platform_id | GPL570
| Sample_contact_name | Shahryar,,Kiaii
| Sample_contact_email | s.kiaii@qmul.ac.uk
| Sample_contact_fax | 0044-2078823891
| Sample_contact_department | Centre of Haemato-Oncology
| Sample_contact_institute | Barts Cancer Institute, Queen Mary University, School of Medicine and Dentistry
| Sample_contact_address | Charterhouse Square
| Sample_contact_city | London
| Sample_contact_zip/postal_code | EC1M 6BQ
| Sample_contact_country | United Kingdom
| Sample_contact_web_link | http://uk-chs-lint01.qmcr.qmul.ac.uk/
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM690nnn/GSM690700/suppl/GSM690700_T1914CD4.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM690nnn/GSM690700/suppl/GSM690700_T1914CD4.mas5.CHP.gz
| Sample_series_id | GSE27928
| Sample_data_row_count | 54675
| |
|
GSM690701 | GPL570 |
|
CD8 TILs patient 1
|
pure CD8 TILs from lymph node biopsie
|
patient: treatment naive patient with FL at diagnosis
tissue type: lymph node
cell type: pure CD8 TILs
|
Gene expression data from highly pure TILs of treatment naive FL patient
|
Sample_geo_accession | GSM690701
| Sample_status | Public on Feb 07 2013
| Sample_submission_date | Mar 14 2011
| Sample_last_update_date | Feb 07 2013
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNAs were extracted using RNeasy Mini Kit (Qiagen) according to manufacturer’s instruction.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix Gene Chip Scanner 30007G
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| Sample_platform_id | GPL570
| Sample_contact_name | Shahryar,,Kiaii
| Sample_contact_email | s.kiaii@qmul.ac.uk
| Sample_contact_fax | 0044-2078823891
| Sample_contact_department | Centre of Haemato-Oncology
| Sample_contact_institute | Barts Cancer Institute, Queen Mary University, School of Medicine and Dentistry
| Sample_contact_address | Charterhouse Square
| Sample_contact_city | London
| Sample_contact_zip/postal_code | EC1M 6BQ
| Sample_contact_country | United Kingdom
| Sample_contact_web_link | http://uk-chs-lint01.qmcr.qmul.ac.uk/
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM690nnn/GSM690701/suppl/GSM690701_R1979CD8.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM690nnn/GSM690701/suppl/GSM690701_R1979CD8.mas5.CHP.gz
| Sample_series_id | GSE27928
| Sample_data_row_count | 54675
| |
|
GSM690702 | GPL570 |
|
CD8 TILs patient 2
|
pure CD8 TILs from lymph node biopsie
|
patient: treatment naive patient with FL at diagnosis
tissue type: lymph node
cell type: pure CD8 TILs
|
Gene expression data from highly pure TILs of treatment naive FL patient
|
Sample_geo_accession | GSM690702
| Sample_status | Public on Feb 07 2013
| Sample_submission_date | Mar 14 2011
| Sample_last_update_date | Feb 07 2013
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNAs were extracted using RNeasy Mini Kit (Qiagen) according to manufacturer’s instruction.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix Gene Chip Scanner 30007G
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| Sample_platform_id | GPL570
| Sample_contact_name | Shahryar,,Kiaii
| Sample_contact_email | s.kiaii@qmul.ac.uk
| Sample_contact_fax | 0044-2078823891
| Sample_contact_department | Centre of Haemato-Oncology
| Sample_contact_institute | Barts Cancer Institute, Queen Mary University, School of Medicine and Dentistry
| Sample_contact_address | Charterhouse Square
| Sample_contact_city | London
| Sample_contact_zip/postal_code | EC1M 6BQ
| Sample_contact_country | United Kingdom
| Sample_contact_web_link | http://uk-chs-lint01.qmcr.qmul.ac.uk/
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM690nnn/GSM690702/suppl/GSM690702_R4313CD8.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM690nnn/GSM690702/suppl/GSM690702_R4313CD8.mas5.CHP.gz
| Sample_series_id | GSE27928
| Sample_data_row_count | 54675
| |
|
GSM690703 | GPL570 |
|
CD8 TILs patient 3
|
pure CD8 TILs from lymph node biopsie
|
patient: treatment naive patient with FL at diagnosis
tissue type: lymph node
cell type: pure CD8 TILs
|
Gene expression data from highly pure TILs of treatment naive FL patient
|
Sample_geo_accession | GSM690703
| Sample_status | Public on Feb 07 2013
| Sample_submission_date | Mar 14 2011
| Sample_last_update_date | Feb 07 2013
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNAs were extracted using RNeasy Mini Kit (Qiagen) according to manufacturer’s instruction.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix Gene Chip Scanner 30007G
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| Sample_platform_id | GPL570
| Sample_contact_name | Shahryar,,Kiaii
| Sample_contact_email | s.kiaii@qmul.ac.uk
| Sample_contact_fax | 0044-2078823891
| Sample_contact_department | Centre of Haemato-Oncology
| Sample_contact_institute | Barts Cancer Institute, Queen Mary University, School of Medicine and Dentistry
| Sample_contact_address | Charterhouse Square
| Sample_contact_city | London
| Sample_contact_zip/postal_code | EC1M 6BQ
| Sample_contact_country | United Kingdom
| Sample_contact_web_link | http://uk-chs-lint01.qmcr.qmul.ac.uk/
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM690nnn/GSM690703/suppl/GSM690703_R8399CD8.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM690nnn/GSM690703/suppl/GSM690703_R8399CD8.mas5.CHP.gz
| Sample_series_id | GSE27928
| Sample_data_row_count | 54675
| |
|
GSM690704 | GPL570 |
|
CD8 TILs patient 4
|
pure CD8 TILs from lymph node biopsie
|
patient: treatment naive patient with FL at diagnosis
tissue type: lymph node
cell type: pure CD8 TILs
|
Gene expression data from highly pure TILs of treatment naive FL patient
|
Sample_geo_accession | GSM690704
| Sample_status | Public on Feb 07 2013
| Sample_submission_date | Mar 14 2011
| Sample_last_update_date | Feb 07 2013
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNAs were extracted using RNeasy Mini Kit (Qiagen) according to manufacturer’s instruction.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix Gene Chip Scanner 30007G
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| Sample_platform_id | GPL570
| Sample_contact_name | Shahryar,,Kiaii
| Sample_contact_email | s.kiaii@qmul.ac.uk
| Sample_contact_fax | 0044-2078823891
| Sample_contact_department | Centre of Haemato-Oncology
| Sample_contact_institute | Barts Cancer Institute, Queen Mary University, School of Medicine and Dentistry
| Sample_contact_address | Charterhouse Square
| Sample_contact_city | London
| Sample_contact_zip/postal_code | EC1M 6BQ
| Sample_contact_country | United Kingdom
| Sample_contact_web_link | http://uk-chs-lint01.qmcr.qmul.ac.uk/
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM690nnn/GSM690704/suppl/GSM690704_T2121CD8.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM690nnn/GSM690704/suppl/GSM690704_T2121CD8.mas5.CHP.gz
| Sample_series_id | GSE27928
| Sample_data_row_count | 54675
| |
|
GSM690705 | GPL570 |
|
CD8 TILs patient 5
|
pure CD8 TILs from lymph node biopsie
|
patient: treatment naive patient with FL at diagnosis
tissue type: lymph node
cell type: pure CD8 TILs
|
Gene expression data from highly pure TILs of treatment naive FL patient
|
Sample_geo_accession | GSM690705
| Sample_status | Public on Feb 07 2013
| Sample_submission_date | Mar 14 2011
| Sample_last_update_date | Feb 07 2013
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNAs were extracted using RNeasy Mini Kit (Qiagen) according to manufacturer’s instruction.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix Gene Chip Scanner 30007G
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| Sample_platform_id | GPL570
| Sample_contact_name | Shahryar,,Kiaii
| Sample_contact_email | s.kiaii@qmul.ac.uk
| Sample_contact_fax | 0044-2078823891
| Sample_contact_department | Centre of Haemato-Oncology
| Sample_contact_institute | Barts Cancer Institute, Queen Mary University, School of Medicine and Dentistry
| Sample_contact_address | Charterhouse Square
| Sample_contact_city | London
| Sample_contact_zip/postal_code | EC1M 6BQ
| Sample_contact_country | United Kingdom
| Sample_contact_web_link | http://uk-chs-lint01.qmcr.qmul.ac.uk/
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM690nnn/GSM690705/suppl/GSM690705_R2299CD8.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM690nnn/GSM690705/suppl/GSM690705_R2299CD8.mas5.CHP.gz
| Sample_series_id | GSE27928
| Sample_data_row_count | 54675
| |
|
GSM690706 | GPL570 |
|
CD8 TILs patient 6
|
pure CD8 TILs from lymph node biopsie
|
patient: treatment naive patient with FL at diagnosis
tissue type: lymph node
cell type: pure CD8 TILs
|
Gene expression data from highly pure TILs of treatment naive FL patient
|
Sample_geo_accession | GSM690706
| Sample_status | Public on Feb 07 2013
| Sample_submission_date | Mar 14 2011
| Sample_last_update_date | Feb 07 2013
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNAs were extracted using RNeasy Mini Kit (Qiagen) according to manufacturer’s instruction.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix Gene Chip Scanner 30007G
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| Sample_platform_id | GPL570
| Sample_contact_name | Shahryar,,Kiaii
| Sample_contact_email | s.kiaii@qmul.ac.uk
| Sample_contact_fax | 0044-2078823891
| Sample_contact_department | Centre of Haemato-Oncology
| Sample_contact_institute | Barts Cancer Institute, Queen Mary University, School of Medicine and Dentistry
| Sample_contact_address | Charterhouse Square
| Sample_contact_city | London
| Sample_contact_zip/postal_code | EC1M 6BQ
| Sample_contact_country | United Kingdom
| Sample_contact_web_link | http://uk-chs-lint01.qmcr.qmul.ac.uk/
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM690nnn/GSM690706/suppl/GSM690706_R4804CD8.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM690nnn/GSM690706/suppl/GSM690706_R4804CD8.mas5.CHP.gz
| Sample_series_id | GSE27928
| Sample_data_row_count | 54675
| |
|
GSM690707 | GPL570 |
|
CD8 TILs patient 7
|
pure CD8 TILs from lymph node biopsie
|
patient: treatment naive patient with FL at diagnosis
tissue type: lymph node
cell type: pure CD8 TILs
|
Gene expression data from highly pure TILs of treatment naive FL patient
|
Sample_geo_accession | GSM690707
| Sample_status | Public on Feb 07 2013
| Sample_submission_date | Mar 14 2011
| Sample_last_update_date | Feb 07 2013
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNAs were extracted using RNeasy Mini Kit (Qiagen) according to manufacturer’s instruction.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix Gene Chip Scanner 30007G
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| Sample_platform_id | GPL570
| Sample_contact_name | Shahryar,,Kiaii
| Sample_contact_email | s.kiaii@qmul.ac.uk
| Sample_contact_fax | 0044-2078823891
| Sample_contact_department | Centre of Haemato-Oncology
| Sample_contact_institute | Barts Cancer Institute, Queen Mary University, School of Medicine and Dentistry
| Sample_contact_address | Charterhouse Square
| Sample_contact_city | London
| Sample_contact_zip/postal_code | EC1M 6BQ
| Sample_contact_country | United Kingdom
| Sample_contact_web_link | http://uk-chs-lint01.qmcr.qmul.ac.uk/
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM690nnn/GSM690707/suppl/GSM690707_R8403CD8.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM690nnn/GSM690707/suppl/GSM690707_R8403CD8.mas5.CHP.gz
| Sample_series_id | GSE27928
| Sample_data_row_count | 54675
| |
|
GSM690708 | GPL570 |
|
CD8 TILs patient 8
|
pure CD8 TILs from lymph node biopsie
|
patient: treatment naive patient with FL at diagnosis
tissue type: lymph node
cell type: pure CD8 TILs
|
Gene expression data from highly pure TILs of treatment naive FL patient
|
Sample_geo_accession | GSM690708
| Sample_status | Public on Feb 07 2013
| Sample_submission_date | Mar 14 2011
| Sample_last_update_date | Feb 07 2013
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNAs were extracted using RNeasy Mini Kit (Qiagen) according to manufacturer’s instruction.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix Gene Chip Scanner 30007G
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| Sample_platform_id | GPL570
| Sample_contact_name | Shahryar,,Kiaii
| Sample_contact_email | s.kiaii@qmul.ac.uk
| Sample_contact_fax | 0044-2078823891
| Sample_contact_department | Centre of Haemato-Oncology
| Sample_contact_institute | Barts Cancer Institute, Queen Mary University, School of Medicine and Dentistry
| Sample_contact_address | Charterhouse Square
| Sample_contact_city | London
| Sample_contact_zip/postal_code | EC1M 6BQ
| Sample_contact_country | United Kingdom
| Sample_contact_web_link | http://uk-chs-lint01.qmcr.qmul.ac.uk/
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM690nnn/GSM690708/suppl/GSM690708_R9703CD8.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM690nnn/GSM690708/suppl/GSM690708_R9703CD8.mas5.CHP.gz
| Sample_series_id | GSE27928
| Sample_data_row_count | 54675
| |
|
GSM690709 | GPL570 |
|
CD8 TILs patient 9
|
pure CD8 TILs from lymph node biopsie
|
patient: treatment naive patient with FL at diagnosis
tissue type: lymph node
cell type: pure CD8 TILs
|
Gene expression data from highly pure TILs of treatment naive FL patient
|
Sample_geo_accession | GSM690709
| Sample_status | Public on Feb 07 2013
| Sample_submission_date | Mar 14 2011
| Sample_last_update_date | Feb 07 2013
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNAs were extracted using RNeasy Mini Kit (Qiagen) according to manufacturer’s instruction.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix Gene Chip Scanner 30007G
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| Sample_platform_id | GPL570
| Sample_contact_name | Shahryar,,Kiaii
| Sample_contact_email | s.kiaii@qmul.ac.uk
| Sample_contact_fax | 0044-2078823891
| Sample_contact_department | Centre of Haemato-Oncology
| Sample_contact_institute | Barts Cancer Institute, Queen Mary University, School of Medicine and Dentistry
| Sample_contact_address | Charterhouse Square
| Sample_contact_city | London
| Sample_contact_zip/postal_code | EC1M 6BQ
| Sample_contact_country | United Kingdom
| Sample_contact_web_link | http://uk-chs-lint01.qmcr.qmul.ac.uk/
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM690nnn/GSM690709/suppl/GSM690709_R9127CD8.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM690nnn/GSM690709/suppl/GSM690709_R9127CD8.mas5.CHP.gz
| Sample_series_id | GSE27928
| Sample_data_row_count | 54675
| |
|
GSM690710 | GPL570 |
|
CD4 TILs of Tonsil 1
|
pure CD4 TILs from reactive tonsil
|
patient: treatment naive tonsilectomised pediatrics
tissue type: reactive tonsil
cell type: pure CD4 TILs
|
Gene expression data from highly pure TILs of reactive tonsil
|
Sample_geo_accession | GSM690710
| Sample_status | Public on Feb 07 2013
| Sample_submission_date | Mar 14 2011
| Sample_last_update_date | Feb 07 2013
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNAs were extracted using RNeasy Mini Kit (Qiagen) according to manufacturer’s instruction.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix Gene Chip Scanner 30007G
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| Sample_platform_id | GPL570
| Sample_contact_name | Shahryar,,Kiaii
| Sample_contact_email | s.kiaii@qmul.ac.uk
| Sample_contact_fax | 0044-2078823891
| Sample_contact_department | Centre of Haemato-Oncology
| Sample_contact_institute | Barts Cancer Institute, Queen Mary University, School of Medicine and Dentistry
| Sample_contact_address | Charterhouse Square
| Sample_contact_city | London
| Sample_contact_zip/postal_code | EC1M 6BQ
| Sample_contact_country | United Kingdom
| Sample_contact_web_link | http://uk-chs-lint01.qmcr.qmul.ac.uk/
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM690nnn/GSM690710/suppl/GSM690710_HTC477CD4.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM690nnn/GSM690710/suppl/GSM690710_HTC477CD4.mas5.CHP.gz
| Sample_series_id | GSE27928
| Sample_data_row_count | 54675
| |
|
GSM690711 | GPL570 |
|
CD4 TILs of Tonsil 2
|
pure CD4 TILs from reactive tonsil
|
patient: treatment naive tonsilectomised pediatrics
tissue type: reactive tonsil
cell type: pure CD4 TILs
|
Gene expression data from highly pure TILs of reactive tonsil
|
Sample_geo_accession | GSM690711
| Sample_status | Public on Feb 07 2013
| Sample_submission_date | Mar 14 2011
| Sample_last_update_date | Feb 07 2013
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNAs were extracted using RNeasy Mini Kit (Qiagen) according to manufacturer’s instruction.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix Gene Chip Scanner 30007G
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| Sample_platform_id | GPL570
| Sample_contact_name | Shahryar,,Kiaii
| Sample_contact_email | s.kiaii@qmul.ac.uk
| Sample_contact_fax | 0044-2078823891
| Sample_contact_department | Centre of Haemato-Oncology
| Sample_contact_institute | Barts Cancer Institute, Queen Mary University, School of Medicine and Dentistry
| Sample_contact_address | Charterhouse Square
| Sample_contact_city | London
| Sample_contact_zip/postal_code | EC1M 6BQ
| Sample_contact_country | United Kingdom
| Sample_contact_web_link | http://uk-chs-lint01.qmcr.qmul.ac.uk/
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM690nnn/GSM690711/suppl/GSM690711_HTC498CD4.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM690nnn/GSM690711/suppl/GSM690711_HTC498CD4.mas5.CHP.gz
| Sample_series_id | GSE27928
| Sample_data_row_count | 54675
| |
|
GSM690712 | GPL570 |
|
CD4 TILs of Tonsil 3
|
pure CD4 TILs from reactive tonsil
|
patient: treatment naive tonsilectomised pediatrics
tissue type: reactive tonsil
cell type: pure CD4 TILs
|
Gene expression data from highly pure TILs of reactive tonsil
|
Sample_geo_accession | GSM690712
| Sample_status | Public on Feb 07 2013
| Sample_submission_date | Mar 14 2011
| Sample_last_update_date | Feb 07 2013
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNAs were extracted using RNeasy Mini Kit (Qiagen) according to manufacturer’s instruction.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix Gene Chip Scanner 30007G
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| Sample_platform_id | GPL570
| Sample_contact_name | Shahryar,,Kiaii
| Sample_contact_email | s.kiaii@qmul.ac.uk
| Sample_contact_fax | 0044-2078823891
| Sample_contact_department | Centre of Haemato-Oncology
| Sample_contact_institute | Barts Cancer Institute, Queen Mary University, School of Medicine and Dentistry
| Sample_contact_address | Charterhouse Square
| Sample_contact_city | London
| Sample_contact_zip/postal_code | EC1M 6BQ
| Sample_contact_country | United Kingdom
| Sample_contact_web_link | http://uk-chs-lint01.qmcr.qmul.ac.uk/
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM690nnn/GSM690712/suppl/GSM690712_HTC517CD4.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM690nnn/GSM690712/suppl/GSM690712_HTC517CD4.mas5.CHP.gz
| Sample_series_id | GSE27928
| Sample_data_row_count | 54675
| |
|
GSM690713 | GPL570 |
|
CD4 TILs of Tonsil 4
|
pure CD4 TILs from reactive tonsil
|
patient: treatment naive tonsilectomised pediatrics
tissue type: reactive tonsil
cell type: pure CD4 TILs
|
Gene expression data from highly pure TILs of reactive tonsil
|
Sample_geo_accession | GSM690713
| Sample_status | Public on Feb 07 2013
| Sample_submission_date | Mar 14 2011
| Sample_last_update_date | Feb 07 2013
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNAs were extracted using RNeasy Mini Kit (Qiagen) according to manufacturer’s instruction.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix Gene Chip Scanner 30007G
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| Sample_platform_id | GPL570
| Sample_contact_name | Shahryar,,Kiaii
| Sample_contact_email | s.kiaii@qmul.ac.uk
| Sample_contact_fax | 0044-2078823891
| Sample_contact_department | Centre of Haemato-Oncology
| Sample_contact_institute | Barts Cancer Institute, Queen Mary University, School of Medicine and Dentistry
| Sample_contact_address | Charterhouse Square
| Sample_contact_city | London
| Sample_contact_zip/postal_code | EC1M 6BQ
| Sample_contact_country | United Kingdom
| Sample_contact_web_link | http://uk-chs-lint01.qmcr.qmul.ac.uk/
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM690nnn/GSM690713/suppl/GSM690713_HTC584CD4.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM690nnn/GSM690713/suppl/GSM690713_HTC584CD4.mas5.CHP.gz
| Sample_series_id | GSE27928
| Sample_data_row_count | 54675
| |
|
GSM690714 | GPL570 |
|
CD4 TILs of Tonsil 5
|
pure CD4 TILs from reactive tonsil
|
patient: treatment naive tonsilectomised pediatrics
tissue type: reactive tonsil
cell type: pure CD4 TILs
|
Gene expression data from highly pure TILs of reactive tonsil
|
Sample_geo_accession | GSM690714
| Sample_status | Public on Feb 07 2013
| Sample_submission_date | Mar 14 2011
| Sample_last_update_date | Feb 07 2013
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNAs were extracted using RNeasy Mini Kit (Qiagen) according to manufacturer’s instruction.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix Gene Chip Scanner 30007G
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| Sample_platform_id | GPL570
| Sample_contact_name | Shahryar,,Kiaii
| Sample_contact_email | s.kiaii@qmul.ac.uk
| Sample_contact_fax | 0044-2078823891
| Sample_contact_department | Centre of Haemato-Oncology
| Sample_contact_institute | Barts Cancer Institute, Queen Mary University, School of Medicine and Dentistry
| Sample_contact_address | Charterhouse Square
| Sample_contact_city | London
| Sample_contact_zip/postal_code | EC1M 6BQ
| Sample_contact_country | United Kingdom
| Sample_contact_web_link | http://uk-chs-lint01.qmcr.qmul.ac.uk/
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM690nnn/GSM690714/suppl/GSM690714_HTC589CD4.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM690nnn/GSM690714/suppl/GSM690714_HTC589CD4.mas5.CHP.gz
| Sample_series_id | GSE27928
| Sample_data_row_count | 54675
| |
|
GSM690715 | GPL570 |
|
CD4 TILs of Tonsil 6
|
pure CD4 TILs from reactive tonsil
|
patient: treatment naive tonsilectomised pediatrics
tissue type: reactive tonsil
cell type: pure CD4 TILs
|
Gene expression data from highly pure TILs of reactive tonsil
|
Sample_geo_accession | GSM690715
| Sample_status | Public on Feb 07 2013
| Sample_submission_date | Mar 14 2011
| Sample_last_update_date | Feb 07 2013
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNAs were extracted using RNeasy Mini Kit (Qiagen) according to manufacturer’s instruction.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix Gene Chip Scanner 30007G
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| Sample_platform_id | GPL570
| Sample_contact_name | Shahryar,,Kiaii
| Sample_contact_email | s.kiaii@qmul.ac.uk
| Sample_contact_fax | 0044-2078823891
| Sample_contact_department | Centre of Haemato-Oncology
| Sample_contact_institute | Barts Cancer Institute, Queen Mary University, School of Medicine and Dentistry
| Sample_contact_address | Charterhouse Square
| Sample_contact_city | London
| Sample_contact_zip/postal_code | EC1M 6BQ
| Sample_contact_country | United Kingdom
| Sample_contact_web_link | http://uk-chs-lint01.qmcr.qmul.ac.uk/
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM690nnn/GSM690715/suppl/GSM690715_HTC610CD4.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM690nnn/GSM690715/suppl/GSM690715_HTC610CD4.mas5.CHP.gz
| Sample_series_id | GSE27928
| Sample_data_row_count | 54675
| |
|
GSM690716 | GPL570 |
|
CD4 TILs of Tonsil 7
|
pure CD4 TILs from reactive tonsil
|
patient: treatment naive tonsilectomised pediatrics
tissue type: reactive tonsil
cell type: pure CD4 TILs
|
Gene expression data from highly pure TILs of reactive tonsil
|
Sample_geo_accession | GSM690716
| Sample_status | Public on Feb 07 2013
| Sample_submission_date | Mar 14 2011
| Sample_last_update_date | Feb 07 2013
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNAs were extracted using RNeasy Mini Kit (Qiagen) according to manufacturer’s instruction.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix Gene Chip Scanner 30007G
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| Sample_platform_id | GPL570
| Sample_contact_name | Shahryar,,Kiaii
| Sample_contact_email | s.kiaii@qmul.ac.uk
| Sample_contact_fax | 0044-2078823891
| Sample_contact_department | Centre of Haemato-Oncology
| Sample_contact_institute | Barts Cancer Institute, Queen Mary University, School of Medicine and Dentistry
| Sample_contact_address | Charterhouse Square
| Sample_contact_city | London
| Sample_contact_zip/postal_code | EC1M 6BQ
| Sample_contact_country | United Kingdom
| Sample_contact_web_link | http://uk-chs-lint01.qmcr.qmul.ac.uk/
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM690nnn/GSM690716/suppl/GSM690716_HTC616CD4.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM690nnn/GSM690716/suppl/GSM690716_HTC616CD4.mas5.CHP.gz
| Sample_series_id | GSE27928
| Sample_data_row_count | 54675
| |
|
GSM690717 | GPL570 |
|
CD8 TILs of Tonsil 1
|
pure CD8 TILs from reactive tonsil
|
patient: treatment naive tonsilectomised pediatrics
tissue type: reactive tonsil
cell type: pure CD8 TILs
|
Gene expression data from highly pure TILs of reactive tonsil
|
Sample_geo_accession | GSM690717
| Sample_status | Public on Feb 07 2013
| Sample_submission_date | Mar 14 2011
| Sample_last_update_date | Feb 07 2013
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNAs were extracted using RNeasy Mini Kit (Qiagen) according to manufacturer’s instruction.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix Gene Chip Scanner 30007G
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| Sample_platform_id | GPL570
| Sample_contact_name | Shahryar,,Kiaii
| Sample_contact_email | s.kiaii@qmul.ac.uk
| Sample_contact_fax | 0044-2078823891
| Sample_contact_department | Centre of Haemato-Oncology
| Sample_contact_institute | Barts Cancer Institute, Queen Mary University, School of Medicine and Dentistry
| Sample_contact_address | Charterhouse Square
| Sample_contact_city | London
| Sample_contact_zip/postal_code | EC1M 6BQ
| Sample_contact_country | United Kingdom
| Sample_contact_web_link | http://uk-chs-lint01.qmcr.qmul.ac.uk/
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM690nnn/GSM690717/suppl/GSM690717_HTC477CD8.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM690nnn/GSM690717/suppl/GSM690717_HTC477CD8.mas5.CHP.gz
| Sample_series_id | GSE27928
| Sample_data_row_count | 54675
| |
|
GSM690718 | GPL570 |
|
CD8 TILs of Tonsil 2
|
pure CD8 TILs from reactive tonsil
|
patient: treatment naive tonsilectomised pediatrics
tissue type: reactive tonsil
cell type: pure CD8 TILs
|
Gene expression data from highly pure TILs of reactive tonsil
|
Sample_geo_accession | GSM690718
| Sample_status | Public on Feb 07 2013
| Sample_submission_date | Mar 14 2011
| Sample_last_update_date | Feb 07 2013
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNAs were extracted using RNeasy Mini Kit (Qiagen) according to manufacturer’s instruction.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix Gene Chip Scanner 30007G
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| Sample_platform_id | GPL570
| Sample_contact_name | Shahryar,,Kiaii
| Sample_contact_email | s.kiaii@qmul.ac.uk
| Sample_contact_fax | 0044-2078823891
| Sample_contact_department | Centre of Haemato-Oncology
| Sample_contact_institute | Barts Cancer Institute, Queen Mary University, School of Medicine and Dentistry
| Sample_contact_address | Charterhouse Square
| Sample_contact_city | London
| Sample_contact_zip/postal_code | EC1M 6BQ
| Sample_contact_country | United Kingdom
| Sample_contact_web_link | http://uk-chs-lint01.qmcr.qmul.ac.uk/
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM690nnn/GSM690718/suppl/GSM690718_HTC498CD8.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM690nnn/GSM690718/suppl/GSM690718_HTC498CD8.mas5.CHP.gz
| Sample_series_id | GSE27928
| Sample_data_row_count | 54675
| |
|
GSM690719 | GPL570 |
|
CD8 TILs of Tonsil 3
|
pure CD8 TILs from reactive tonsil
|
patient: treatment naive tonsilectomised pediatrics
tissue type: reactive tonsil
cell type: pure CD8 TILs
|
Gene expression data from highly pure TILs of reactive tonsil
|
Sample_geo_accession | GSM690719
| Sample_status | Public on Feb 07 2013
| Sample_submission_date | Mar 14 2011
| Sample_last_update_date | Feb 07 2013
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNAs were extracted using RNeasy Mini Kit (Qiagen) according to manufacturer’s instruction.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix Gene Chip Scanner 30007G
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| Sample_platform_id | GPL570
| Sample_contact_name | Shahryar,,Kiaii
| Sample_contact_email | s.kiaii@qmul.ac.uk
| Sample_contact_fax | 0044-2078823891
| Sample_contact_department | Centre of Haemato-Oncology
| Sample_contact_institute | Barts Cancer Institute, Queen Mary University, School of Medicine and Dentistry
| Sample_contact_address | Charterhouse Square
| Sample_contact_city | London
| Sample_contact_zip/postal_code | EC1M 6BQ
| Sample_contact_country | United Kingdom
| Sample_contact_web_link | http://uk-chs-lint01.qmcr.qmul.ac.uk/
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM690nnn/GSM690719/suppl/GSM690719_HTC517CD8.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM690nnn/GSM690719/suppl/GSM690719_HTC517CD8.mas5.CHP.gz
| Sample_series_id | GSE27928
| Sample_data_row_count | 54675
| |
|
GSM690720 | GPL570 |
|
CD8 TILs of Tonsil 4
|
pure CD8 TILs from reactive tonsil
|
patient: treatment naive tonsilectomised pediatrics
tissue type: reactive tonsil
cell type: pure CD8 TILs
|
Gene expression data from highly pure TILs of reactive tonsil
|
Sample_geo_accession | GSM690720
| Sample_status | Public on Feb 07 2013
| Sample_submission_date | Mar 14 2011
| Sample_last_update_date | Feb 07 2013
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNAs were extracted using RNeasy Mini Kit (Qiagen) according to manufacturer’s instruction.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix Gene Chip Scanner 30007G
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| Sample_platform_id | GPL570
| Sample_contact_name | Shahryar,,Kiaii
| Sample_contact_email | s.kiaii@qmul.ac.uk
| Sample_contact_fax | 0044-2078823891
| Sample_contact_department | Centre of Haemato-Oncology
| Sample_contact_institute | Barts Cancer Institute, Queen Mary University, School of Medicine and Dentistry
| Sample_contact_address | Charterhouse Square
| Sample_contact_city | London
| Sample_contact_zip/postal_code | EC1M 6BQ
| Sample_contact_country | United Kingdom
| Sample_contact_web_link | http://uk-chs-lint01.qmcr.qmul.ac.uk/
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM690nnn/GSM690720/suppl/GSM690720_HTC584CD8.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM690nnn/GSM690720/suppl/GSM690720_HTC584CD8.mas5.CHP.gz
| Sample_series_id | GSE27928
| Sample_data_row_count | 54675
| |
|
GSM690721 | GPL570 |
|
CD8 TILs of Tonsil 5
|
pure CD8 TILs from reactive tonsil
|
patient: treatment naive tonsilectomised pediatrics
tissue type: reactive tonsil
cell type: pure CD8 TILs
|
Gene expression data from highly pure TILs of reactive tonsil
|
Sample_geo_accession | GSM690721
| Sample_status | Public on Feb 07 2013
| Sample_submission_date | Mar 14 2011
| Sample_last_update_date | Feb 07 2013
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNAs were extracted using RNeasy Mini Kit (Qiagen) according to manufacturer’s instruction.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix Gene Chip Scanner 30007G
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| Sample_platform_id | GPL570
| Sample_contact_name | Shahryar,,Kiaii
| Sample_contact_email | s.kiaii@qmul.ac.uk
| Sample_contact_fax | 0044-2078823891
| Sample_contact_department | Centre of Haemato-Oncology
| Sample_contact_institute | Barts Cancer Institute, Queen Mary University, School of Medicine and Dentistry
| Sample_contact_address | Charterhouse Square
| Sample_contact_city | London
| Sample_contact_zip/postal_code | EC1M 6BQ
| Sample_contact_country | United Kingdom
| Sample_contact_web_link | http://uk-chs-lint01.qmcr.qmul.ac.uk/
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM690nnn/GSM690721/suppl/GSM690721_HTC589CD8.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM690nnn/GSM690721/suppl/GSM690721_HTC589CD8.mas5.CHP.gz
| Sample_series_id | GSE27928
| Sample_data_row_count | 54675
| |
|
GSM690722 | GPL570 |
|
CD8 TILs of Tonsil 6
|
pure CD8 TILs from reactive tonsil
|
patient: treatment naive tonsilectomised pediatrics
tissue type: reactive tonsil
cell type: pure CD8 TILs
|
Gene expression data from highly pure TILs of reactive tonsil
|
Sample_geo_accession | GSM690722
| Sample_status | Public on Feb 07 2013
| Sample_submission_date | Mar 14 2011
| Sample_last_update_date | Feb 07 2013
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNAs were extracted using RNeasy Mini Kit (Qiagen) according to manufacturer’s instruction.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix Gene Chip Scanner 30007G
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| Sample_platform_id | GPL570
| Sample_contact_name | Shahryar,,Kiaii
| Sample_contact_email | s.kiaii@qmul.ac.uk
| Sample_contact_fax | 0044-2078823891
| Sample_contact_department | Centre of Haemato-Oncology
| Sample_contact_institute | Barts Cancer Institute, Queen Mary University, School of Medicine and Dentistry
| Sample_contact_address | Charterhouse Square
| Sample_contact_city | London
| Sample_contact_zip/postal_code | EC1M 6BQ
| Sample_contact_country | United Kingdom
| Sample_contact_web_link | http://uk-chs-lint01.qmcr.qmul.ac.uk/
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM690nnn/GSM690722/suppl/GSM690722_HTC610CD8.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM690nnn/GSM690722/suppl/GSM690722_HTC610CD8.mas5.CHP.gz
| Sample_series_id | GSE27928
| Sample_data_row_count | 54675
| |
|
GSM690723 | GPL570 |
|
CD8 TILs of Tonsil 7
|
pure CD8 TILs from reactive tonsil
|
patient: treatment naive tonsilectomised pediatrics
tissue type: reactive tonsil
cell type: pure CD8 TILs
|
Gene expression data from highly pure TILs of reactive tonsil
|
Sample_geo_accession | GSM690723
| Sample_status | Public on Feb 07 2013
| Sample_submission_date | Mar 14 2011
| Sample_last_update_date | Feb 07 2013
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNAs were extracted using RNeasy Mini Kit (Qiagen) according to manufacturer’s instruction.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix Gene Chip Scanner 30007G
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| Sample_platform_id | GPL570
| Sample_contact_name | Shahryar,,Kiaii
| Sample_contact_email | s.kiaii@qmul.ac.uk
| Sample_contact_fax | 0044-2078823891
| Sample_contact_department | Centre of Haemato-Oncology
| Sample_contact_institute | Barts Cancer Institute, Queen Mary University, School of Medicine and Dentistry
| Sample_contact_address | Charterhouse Square
| Sample_contact_city | London
| Sample_contact_zip/postal_code | EC1M 6BQ
| Sample_contact_country | United Kingdom
| Sample_contact_web_link | http://uk-chs-lint01.qmcr.qmul.ac.uk/
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM690nnn/GSM690723/suppl/GSM690723_HTC616CD8.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM690nnn/GSM690723/suppl/GSM690723_HTC616CD8.mas5.CHP.gz
| Sample_series_id | GSE27928
| Sample_data_row_count | 54675
| |
|
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