Search results for the GEO ID: GSE27969  |
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GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM691834 | GPL1261 |
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G1ME_WT_rep1
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G1ME Blood Cells
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strain: C58BL/6 Bruce 4 (B4)
cell type: G1ME cells
genotype/variation: wild type
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G1ME_1
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| Sample_geo_accession | GSM691834
| | Sample_status | Public on Mar 21 2011
| | Sample_submission_date | Mar 15 2011
| | Sample_last_update_date | Mar 21 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | No treatment
| | Sample_growth_protocol_ch1 | Cells were grown in alpha-minimal essential media, supplemented with 20% calf serum 100 ng/mL thrombopoiten, penicillin and streptomycin.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted QIAGEN RNeasy mini kit including a DNase I treatment, in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix labelling protocol
| | Sample_hyb_protocol | Standard Affymetrix hybridisation protocol
| | Sample_scan_protocol | Standard Affymetrix scan protocol
| | Sample_data_processing | Gene expression was assessed in G1ME cells with GeneChip Mouse Genome 430 2.0 microarrays (Affymetrix). For ES & MEF cells, we used expression data from the same microarray platform (GEO GSE8024). There were 3 technical replicates for ES cells and 2 for G1MEs and MEFs. All microarrays were background corrected and quantile normalized using the gcrma bioconductor R package.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Matthew,Daniel,Young
| | Sample_contact_email | myoung@wehi.edu.au
| | Sample_contact_department | Bioinformatics
| | Sample_contact_institute | Walter & Eliza Hall Institute of Medical Research
| | Sample_contact_address | 1G Royal Parade
| | Sample_contact_city | Parkville
| | Sample_contact_state | Victoria
| | Sample_contact_zip/postal_code | 3052
| | Sample_contact_country | Australia
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM691nnn/GSM691834/suppl/GSM691834.CEL.gz
| | Sample_series_id | GSE27969
| | Sample_series_id | GSE27970
| | Sample_data_row_count | 45101
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GSM691835 | GPL1261 |
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G1ME_WT_rep2
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G1ME Blood Cells
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strain: C58BL/6 Bruce 4 (B4)
cell type: G1ME cells
genotype/variation: wild type
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G1ME_2
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| Sample_geo_accession | GSM691835
| | Sample_status | Public on Mar 21 2011
| | Sample_submission_date | Mar 15 2011
| | Sample_last_update_date | Mar 21 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | No treatment
| | Sample_growth_protocol_ch1 | Cells were grown in alpha-minimal essential media, supplemented with 20% calf serum 100 ng/mL thrombopoiten, penicillin and streptomycin.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted QIAGEN RNeasy mini kit including a DNase I treatment, in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix labelling protocol
| | Sample_hyb_protocol | Standard Affymetrix hybridisation protocol
| | Sample_scan_protocol | Standard Affymetrix scan protocol
| | Sample_data_processing | Gene expression was assessed in G1ME cells with GeneChip Mouse Genome 430 2.0 microarrays (Affymetrix). For ES & MEF cells, we used expression data from the same microarray platform (GEO GSE8024). There were 3 technical replicates for ES cells and 2 for G1MEs and MEFs. All microarrays were background corrected and quantile normalized using the gcrma bioconductor R package.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Matthew,Daniel,Young
| | Sample_contact_email | myoung@wehi.edu.au
| | Sample_contact_department | Bioinformatics
| | Sample_contact_institute | Walter & Eliza Hall Institute of Medical Research
| | Sample_contact_address | 1G Royal Parade
| | Sample_contact_city | Parkville
| | Sample_contact_state | Victoria
| | Sample_contact_zip/postal_code | 3052
| | Sample_contact_country | Australia
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM691nnn/GSM691835/suppl/GSM691835.CEL.gz
| | Sample_series_id | GSE27969
| | Sample_series_id | GSE27970
| | Sample_data_row_count | 45101
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