Search results for the GEO ID: GSE28005  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM692697 | GPL570 |
|
adipose tissue from subject#1 at day 0, biological replicate 1
|
human adipose tissue before the diet
|
subject: #1
bmi: Lean
protocol: high fat diet
time: before the diet
tissue: adipose tissue
|
TA 1A
|
| Sample_geo_accession | GSM692697
| | Sample_status | Public on Mar 05 2012
| | Sample_submission_date | Mar 17 2011
| | Sample_last_update_date | Mar 05 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol adapted for small amounts of RNA from 100ng total RNA
| | Sample_hyb_protocol | Following fragmentation, 15µg of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array U133 Plus 2,0 . GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner GCS3000.
| | Sample_data_processing | The dataset was analyzed inside the R environment using packages from the BioConductor project. Normalization was performed with RMA algorithm
| | Sample_platform_id | GPL570
| | Sample_contact_name | emmanuelle,,meugnier
| | Sample_contact_email | meugnier@univ-lyon1.fr
| | Sample_contact_institute | INSERMU870/INRA1235
| | Sample_contact_address | Faculté de Médecine Lyon sud
| | Sample_contact_city | oullins
| | Sample_contact_zip/postal_code | 69600
| | Sample_contact_country | France
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM692nnn/GSM692697/suppl/GSM692697.CEL.gz
| | Sample_series_id | GSE28005
| | Sample_data_row_count | 54675
| | |
|
GSM692698 | GPL570 |
|
adipose tissue from subject#1 at day 14, biological replicate 1
|
human adipose tissue after 14 days of high fat diet
|
subject: #1
bmi: Lean
protocol: high fat diet
time: after 14 days
tissue: adipose tissue
|
TA 1B
|
| Sample_geo_accession | GSM692698
| | Sample_status | Public on Mar 05 2012
| | Sample_submission_date | Mar 17 2011
| | Sample_last_update_date | Mar 05 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol adapted for small amounts of RNA from 100ng total RNA
| | Sample_hyb_protocol | Following fragmentation, 15µg of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array U133 Plus 2,0 . GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner GCS3000.
| | Sample_data_processing | The dataset was analyzed inside the R environment using packages from the BioConductor project. Normalization was performed with RMA algorithm
| | Sample_platform_id | GPL570
| | Sample_contact_name | emmanuelle,,meugnier
| | Sample_contact_email | meugnier@univ-lyon1.fr
| | Sample_contact_institute | INSERMU870/INRA1235
| | Sample_contact_address | Faculté de Médecine Lyon sud
| | Sample_contact_city | oullins
| | Sample_contact_zip/postal_code | 69600
| | Sample_contact_country | France
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM692nnn/GSM692698/suppl/GSM692698.CEL.gz
| | Sample_series_id | GSE28005
| | Sample_data_row_count | 54675
| | |
|
GSM692699 | GPL570 |
|
adipose tissue from subject#1 at day 56, biological replicate 1
|
human adipose tissue after 56 days of high fat diet
|
subject: #1
bmi: Lean
protocol: high fat diet
time: after 56 days
tissue: adipose tissue
|
TA 1C
|
| Sample_geo_accession | GSM692699
| | Sample_status | Public on Mar 05 2012
| | Sample_submission_date | Mar 17 2011
| | Sample_last_update_date | Mar 05 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol adapted for small amounts of RNA from 100ng total RNA
| | Sample_hyb_protocol | Following fragmentation, 15µg of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array U133 Plus 2,0 . GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner GCS3000.
| | Sample_data_processing | The dataset was analyzed inside the R environment using packages from the BioConductor project. Normalization was performed with RMA algorithm
| | Sample_platform_id | GPL570
| | Sample_contact_name | emmanuelle,,meugnier
| | Sample_contact_email | meugnier@univ-lyon1.fr
| | Sample_contact_institute | INSERMU870/INRA1235
| | Sample_contact_address | Faculté de Médecine Lyon sud
| | Sample_contact_city | oullins
| | Sample_contact_zip/postal_code | 69600
| | Sample_contact_country | France
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM692nnn/GSM692699/suppl/GSM692699.CEL.gz
| | Sample_series_id | GSE28005
| | Sample_data_row_count | 54675
| | |
|
GSM692700 | GPL570 |
|
adipose tissue from subject#3 at day 0, biological replicate 2
|
human adipose tissue before the diet
|
subject: #3
bmi: Lean
protocol: high fat diet
time: before the diet
tissue: adipose tissue
|
TA 3A
|
| Sample_geo_accession | GSM692700
| | Sample_status | Public on Mar 05 2012
| | Sample_submission_date | Mar 17 2011
| | Sample_last_update_date | Mar 05 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol adapted for small amounts of RNA from 100ng total RNA
| | Sample_hyb_protocol | Following fragmentation, 15µg of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array U133 Plus 2,0 . GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner GCS3000.
| | Sample_data_processing | The dataset was analyzed inside the R environment using packages from the BioConductor project. Normalization was performed with RMA algorithm
| | Sample_platform_id | GPL570
| | Sample_contact_name | emmanuelle,,meugnier
| | Sample_contact_email | meugnier@univ-lyon1.fr
| | Sample_contact_institute | INSERMU870/INRA1235
| | Sample_contact_address | Faculté de Médecine Lyon sud
| | Sample_contact_city | oullins
| | Sample_contact_zip/postal_code | 69600
| | Sample_contact_country | France
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM692nnn/GSM692700/suppl/GSM692700.CEL.gz
| | Sample_series_id | GSE28005
| | Sample_data_row_count | 54675
| | |
|
GSM692701 | GPL570 |
|
adipose tissue from subject#3 at day 14, biological replicate 2
|
human adipose tissue after 14 days of high fat diet
|
subject: #3
bmi: Lean
protocol: high fat diet
time: after 14 days
tissue: adipose tissue
|
TA 3B
|
| Sample_geo_accession | GSM692701
| | Sample_status | Public on Mar 05 2012
| | Sample_submission_date | Mar 17 2011
| | Sample_last_update_date | Mar 05 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol adapted for small amounts of RNA from 100ng total RNA
| | Sample_hyb_protocol | Following fragmentation, 15µg of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array U133 Plus 2,0 . GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner GCS3000.
| | Sample_data_processing | The dataset was analyzed inside the R environment using packages from the BioConductor project. Normalization was performed with RMA algorithm
| | Sample_platform_id | GPL570
| | Sample_contact_name | emmanuelle,,meugnier
| | Sample_contact_email | meugnier@univ-lyon1.fr
| | Sample_contact_institute | INSERMU870/INRA1235
| | Sample_contact_address | Faculté de Médecine Lyon sud
| | Sample_contact_city | oullins
| | Sample_contact_zip/postal_code | 69600
| | Sample_contact_country | France
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM692nnn/GSM692701/suppl/GSM692701.CEL.gz
| | Sample_series_id | GSE28005
| | Sample_data_row_count | 54675
| | |
|
GSM692702 | GPL570 |
|
adipose tissue from subject#3 at day 56, biological replicate 2
|
human adipose tissue after 56 days of high fat diet
|
subject: #3
bmi: Lean
protocol: high fat diet
time: after 56 days
tissue: adipose tissue
|
TA 3C
|
| Sample_geo_accession | GSM692702
| | Sample_status | Public on Mar 05 2012
| | Sample_submission_date | Mar 17 2011
| | Sample_last_update_date | Mar 05 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol adapted for small amounts of RNA from 100ng total RNA
| | Sample_hyb_protocol | Following fragmentation, 15µg of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array U133 Plus 2,0 . GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner GCS3000.
| | Sample_data_processing | The dataset was analyzed inside the R environment using packages from the BioConductor project. Normalization was performed with RMA algorithm
| | Sample_platform_id | GPL570
| | Sample_contact_name | emmanuelle,,meugnier
| | Sample_contact_email | meugnier@univ-lyon1.fr
| | Sample_contact_institute | INSERMU870/INRA1235
| | Sample_contact_address | Faculté de Médecine Lyon sud
| | Sample_contact_city | oullins
| | Sample_contact_zip/postal_code | 69600
| | Sample_contact_country | France
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM692nnn/GSM692702/suppl/GSM692702.CEL.gz
| | Sample_series_id | GSE28005
| | Sample_data_row_count | 54675
| | |
|
GSM692703 | GPL570 |
|
adipose tissue from subject#5 at day 0, biological replicate 3
|
human adipose tissue before the diet
|
subject: #5
bmi: Overweight
protocol: high fat diet
time: before the diet
tissue: adipose tissue
|
TA 5A
|
| Sample_geo_accession | GSM692703
| | Sample_status | Public on Mar 05 2012
| | Sample_submission_date | Mar 17 2011
| | Sample_last_update_date | Mar 05 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol adapted for small amounts of RNA from 100ng total RNA
| | Sample_hyb_protocol | Following fragmentation, 15µg of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array U133 Plus 2,0 . GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner GCS3000.
| | Sample_data_processing | The dataset was analyzed inside the R environment using packages from the BioConductor project. Normalization was performed with RMA algorithm
| | Sample_platform_id | GPL570
| | Sample_contact_name | emmanuelle,,meugnier
| | Sample_contact_email | meugnier@univ-lyon1.fr
| | Sample_contact_institute | INSERMU870/INRA1235
| | Sample_contact_address | Faculté de Médecine Lyon sud
| | Sample_contact_city | oullins
| | Sample_contact_zip/postal_code | 69600
| | Sample_contact_country | France
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM692nnn/GSM692703/suppl/GSM692703.CEL.gz
| | Sample_series_id | GSE28005
| | Sample_data_row_count | 54675
| | |
|
GSM692704 | GPL570 |
|
adipose tissue from subject#5 at day 14, biological replicate 3
|
human adipose tissue after 14 days of high fat diet
|
subject: #5
bmi: Overweight
protocol: high fat diet
time: after 14 days
tissue: adipose tissue
|
TA 5B
|
| Sample_geo_accession | GSM692704
| | Sample_status | Public on Mar 05 2012
| | Sample_submission_date | Mar 17 2011
| | Sample_last_update_date | Mar 05 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol adapted for small amounts of RNA from 100ng total RNA
| | Sample_hyb_protocol | Following fragmentation, 15µg of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array U133 Plus 2,0 . GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner GCS3000.
| | Sample_data_processing | The dataset was analyzed inside the R environment using packages from the BioConductor project. Normalization was performed with RMA algorithm
| | Sample_platform_id | GPL570
| | Sample_contact_name | emmanuelle,,meugnier
| | Sample_contact_email | meugnier@univ-lyon1.fr
| | Sample_contact_institute | INSERMU870/INRA1235
| | Sample_contact_address | Faculté de Médecine Lyon sud
| | Sample_contact_city | oullins
| | Sample_contact_zip/postal_code | 69600
| | Sample_contact_country | France
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM692nnn/GSM692704/suppl/GSM692704.CEL.gz
| | Sample_series_id | GSE28005
| | Sample_data_row_count | 54675
| | |
|
GSM692705 | GPL570 |
|
adipose tissue from subject#5 at day 56, biological replicate 3
|
human adipose tissue after 56 days of high fat diet
|
subject: #5
bmi: Overweight
protocol: high fat diet
time: after 56 days
tissue: adipose tissue
|
TA 5C
|
| Sample_geo_accession | GSM692705
| | Sample_status | Public on Mar 05 2012
| | Sample_submission_date | Mar 17 2011
| | Sample_last_update_date | Mar 05 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol adapted for small amounts of RNA from 100ng total RNA
| | Sample_hyb_protocol | Following fragmentation, 15µg of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array U133 Plus 2,0 . GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner GCS3000.
| | Sample_data_processing | The dataset was analyzed inside the R environment using packages from the BioConductor project. Normalization was performed with RMA algorithm
| | Sample_platform_id | GPL570
| | Sample_contact_name | emmanuelle,,meugnier
| | Sample_contact_email | meugnier@univ-lyon1.fr
| | Sample_contact_institute | INSERMU870/INRA1235
| | Sample_contact_address | Faculté de Médecine Lyon sud
| | Sample_contact_city | oullins
| | Sample_contact_zip/postal_code | 69600
| | Sample_contact_country | France
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM692nnn/GSM692705/suppl/GSM692705.CEL.gz
| | Sample_series_id | GSE28005
| | Sample_data_row_count | 54675
| | |
|
GSM692706 | GPL570 |
|
adipose tissue from subject#6 at day 0, biological replicate 4
|
human adipose tissue before the diet
|
subject: #6
bmi: Overweight
protocol: high fat diet
time: before the diet
tissue: adipose tissue
|
TA 6A
|
| Sample_geo_accession | GSM692706
| | Sample_status | Public on Mar 05 2012
| | Sample_submission_date | Mar 17 2011
| | Sample_last_update_date | Mar 05 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol adapted for small amounts of RNA from 100ng total RNA
| | Sample_hyb_protocol | Following fragmentation, 15µg of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array U133 Plus 2,0 . GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner GCS3000.
| | Sample_data_processing | The dataset was analyzed inside the R environment using packages from the BioConductor project. Normalization was performed with RMA algorithm
| | Sample_platform_id | GPL570
| | Sample_contact_name | emmanuelle,,meugnier
| | Sample_contact_email | meugnier@univ-lyon1.fr
| | Sample_contact_institute | INSERMU870/INRA1235
| | Sample_contact_address | Faculté de Médecine Lyon sud
| | Sample_contact_city | oullins
| | Sample_contact_zip/postal_code | 69600
| | Sample_contact_country | France
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM692nnn/GSM692706/suppl/GSM692706.CEL.gz
| | Sample_series_id | GSE28005
| | Sample_data_row_count | 54675
| | |
|
GSM692707 | GPL570 |
|
adipose tissue from subject#6 at day 14, biological replicate 4
|
human adipose tissue after 14 days of high fat diet
|
subject: #6
bmi: Overweight
protocol: high fat diet
time: after 14 days
tissue: adipose tissue
|
TA 6B
|
| Sample_geo_accession | GSM692707
| | Sample_status | Public on Mar 05 2012
| | Sample_submission_date | Mar 17 2011
| | Sample_last_update_date | Mar 05 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol adapted for small amounts of RNA from 100ng total RNA
| | Sample_hyb_protocol | Following fragmentation, 15µg of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array U133 Plus 2,0 . GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner GCS3000.
| | Sample_data_processing | The dataset was analyzed inside the R environment using packages from the BioConductor project. Normalization was performed with RMA algorithm
| | Sample_platform_id | GPL570
| | Sample_contact_name | emmanuelle,,meugnier
| | Sample_contact_email | meugnier@univ-lyon1.fr
| | Sample_contact_institute | INSERMU870/INRA1235
| | Sample_contact_address | Faculté de Médecine Lyon sud
| | Sample_contact_city | oullins
| | Sample_contact_zip/postal_code | 69600
| | Sample_contact_country | France
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM692nnn/GSM692707/suppl/GSM692707.CEL.gz
| | Sample_series_id | GSE28005
| | Sample_data_row_count | 54675
| | |
|
GSM692708 | GPL570 |
|
adipose tissue from subject#6 at day 56, biological replicate 4
|
human adipose tissue after 56 days of high fat diet
|
subject: #6
bmi: Overweight
protocol: high fat diet
time: after 56 days
tissue: adipose tissue
|
TA 6C
|
| Sample_geo_accession | GSM692708
| | Sample_status | Public on Mar 05 2012
| | Sample_submission_date | Mar 17 2011
| | Sample_last_update_date | Mar 05 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol adapted for small amounts of RNA from 100ng total RNA
| | Sample_hyb_protocol | Following fragmentation, 15µg of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array U133 Plus 2,0 . GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner GCS3000.
| | Sample_data_processing | The dataset was analyzed inside the R environment using packages from the BioConductor project. Normalization was performed with RMA algorithm
| | Sample_platform_id | GPL570
| | Sample_contact_name | emmanuelle,,meugnier
| | Sample_contact_email | meugnier@univ-lyon1.fr
| | Sample_contact_institute | INSERMU870/INRA1235
| | Sample_contact_address | Faculté de Médecine Lyon sud
| | Sample_contact_city | oullins
| | Sample_contact_zip/postal_code | 69600
| | Sample_contact_country | France
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM692nnn/GSM692708/suppl/GSM692708.CEL.gz
| | Sample_series_id | GSE28005
| | Sample_data_row_count | 54675
| | |
|
GSM692709 | GPL570 |
|
adipose tissue from subject#7 at day 0, biological replicate 5
|
human adipose tissue before the diet
|
subject: #7
bmi: Overweight
protocol: high fat diet
time: before the diet
tissue: adipose tissue
|
TA 7A
|
| Sample_geo_accession | GSM692709
| | Sample_status | Public on Mar 05 2012
| | Sample_submission_date | Mar 17 2011
| | Sample_last_update_date | Mar 05 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol adapted for small amounts of RNA from 100ng total RNA
| | Sample_hyb_protocol | Following fragmentation, 15µg of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array U133 Plus 2,0 . GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner GCS3000.
| | Sample_data_processing | The dataset was analyzed inside the R environment using packages from the BioConductor project. Normalization was performed with RMA algorithm
| | Sample_platform_id | GPL570
| | Sample_contact_name | emmanuelle,,meugnier
| | Sample_contact_email | meugnier@univ-lyon1.fr
| | Sample_contact_institute | INSERMU870/INRA1235
| | Sample_contact_address | Faculté de Médecine Lyon sud
| | Sample_contact_city | oullins
| | Sample_contact_zip/postal_code | 69600
| | Sample_contact_country | France
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM692nnn/GSM692709/suppl/GSM692709.CEL.gz
| | Sample_series_id | GSE28005
| | Sample_data_row_count | 54675
| | |
|
GSM692710 | GPL570 |
|
adipose tissue from subject#7 at day 14, biological replicate 5
|
human adipose tissue after 14 days of high fat diet
|
subject: #7
bmi: Overweight
protocol: high fat diet
time: after 14 days
tissue: adipose tissue
|
TA 7B
|
| Sample_geo_accession | GSM692710
| | Sample_status | Public on Mar 05 2012
| | Sample_submission_date | Mar 17 2011
| | Sample_last_update_date | Mar 05 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol adapted for small amounts of RNA from 100ng total RNA
| | Sample_hyb_protocol | Following fragmentation, 15µg of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array U133 Plus 2,0 . GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner GCS3000.
| | Sample_data_processing | The dataset was analyzed inside the R environment using packages from the BioConductor project. Normalization was performed with RMA algorithm
| | Sample_platform_id | GPL570
| | Sample_contact_name | emmanuelle,,meugnier
| | Sample_contact_email | meugnier@univ-lyon1.fr
| | Sample_contact_institute | INSERMU870/INRA1235
| | Sample_contact_address | Faculté de Médecine Lyon sud
| | Sample_contact_city | oullins
| | Sample_contact_zip/postal_code | 69600
| | Sample_contact_country | France
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM692nnn/GSM692710/suppl/GSM692710.CEL.gz
| | Sample_series_id | GSE28005
| | Sample_data_row_count | 54675
| | |
|
GSM692711 | GPL570 |
|
adipose tissue from subject#7 at day 56, biological replicate 5
|
human adipose tissue after 56 days of high fat diet
|
subject: #7
bmi: Overweight
protocol: high fat diet
time: after 56 days
tissue: adipose tissue
|
TA 7C
|
| Sample_geo_accession | GSM692711
| | Sample_status | Public on Mar 05 2012
| | Sample_submission_date | Mar 17 2011
| | Sample_last_update_date | Mar 05 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol adapted for small amounts of RNA from 100ng total RNA
| | Sample_hyb_protocol | Following fragmentation, 15µg of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array U133 Plus 2,0 . GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner GCS3000.
| | Sample_data_processing | The dataset was analyzed inside the R environment using packages from the BioConductor project. Normalization was performed with RMA algorithm
| | Sample_platform_id | GPL570
| | Sample_contact_name | emmanuelle,,meugnier
| | Sample_contact_email | meugnier@univ-lyon1.fr
| | Sample_contact_institute | INSERMU870/INRA1235
| | Sample_contact_address | Faculté de Médecine Lyon sud
| | Sample_contact_city | oullins
| | Sample_contact_zip/postal_code | 69600
| | Sample_contact_country | France
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM692nnn/GSM692711/suppl/GSM692711.CEL.gz
| | Sample_series_id | GSE28005
| | Sample_data_row_count | 54675
| | |
|
GSM692712 | GPL570 |
|
adipose tissue from subject#8 at day 0, biological replicate 6
|
human adipose tissue before the diet
|
subject: #8
bmi: Overweight
protocol: high fat diet
time: before the diet
tissue: adipose tissue
|
TA 8A
|
| Sample_geo_accession | GSM692712
| | Sample_status | Public on Mar 05 2012
| | Sample_submission_date | Mar 17 2011
| | Sample_last_update_date | Mar 05 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol adapted for small amounts of RNA from 100ng total RNA
| | Sample_hyb_protocol | Following fragmentation, 15µg of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array U133 Plus 2,0 . GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner GCS3000.
| | Sample_data_processing | The dataset was analyzed inside the R environment using packages from the BioConductor project. Normalization was performed with RMA algorithm
| | Sample_platform_id | GPL570
| | Sample_contact_name | emmanuelle,,meugnier
| | Sample_contact_email | meugnier@univ-lyon1.fr
| | Sample_contact_institute | INSERMU870/INRA1235
| | Sample_contact_address | Faculté de Médecine Lyon sud
| | Sample_contact_city | oullins
| | Sample_contact_zip/postal_code | 69600
| | Sample_contact_country | France
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM692nnn/GSM692712/suppl/GSM692712.CEL.gz
| | Sample_series_id | GSE28005
| | Sample_data_row_count | 54675
| | |
|
GSM692713 | GPL570 |
|
adipose tissue from subject#8 at day 14, biological replicate 6
|
human adipose tissue after 14 days of high fat diet
|
subject: #8
bmi: Overweight
protocol: high fat diet
time: after 14 days
tissue: adipose tissue
|
TA 8B
|
| Sample_geo_accession | GSM692713
| | Sample_status | Public on Mar 05 2012
| | Sample_submission_date | Mar 17 2011
| | Sample_last_update_date | Mar 05 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol adapted for small amounts of RNA from 100ng total RNA
| | Sample_hyb_protocol | Following fragmentation, 15µg of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array U133 Plus 2,0 . GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner GCS3000.
| | Sample_data_processing | The dataset was analyzed inside the R environment using packages from the BioConductor project. Normalization was performed with RMA algorithm
| | Sample_platform_id | GPL570
| | Sample_contact_name | emmanuelle,,meugnier
| | Sample_contact_email | meugnier@univ-lyon1.fr
| | Sample_contact_institute | INSERMU870/INRA1235
| | Sample_contact_address | Faculté de Médecine Lyon sud
| | Sample_contact_city | oullins
| | Sample_contact_zip/postal_code | 69600
| | Sample_contact_country | France
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM692nnn/GSM692713/suppl/GSM692713.CEL.gz
| | Sample_series_id | GSE28005
| | Sample_data_row_count | 54675
| | |
|
GSM692714 | GPL570 |
|
adipose tissue from subject#8 at day 56, biological replicate 6
|
human adipose tissue after 56 days of high fat diet
|
subject: #8
bmi: Overweight
protocol: high fat diet
time: after 56 days
tissue: adipose tissue
|
TA 8C
|
| Sample_geo_accession | GSM692714
| | Sample_status | Public on Mar 05 2012
| | Sample_submission_date | Mar 17 2011
| | Sample_last_update_date | Mar 05 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol adapted for small amounts of RNA from 100ng total RNA
| | Sample_hyb_protocol | Following fragmentation, 15µg of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array U133 Plus 2,0 . GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner GCS3000.
| | Sample_data_processing | The dataset was analyzed inside the R environment using packages from the BioConductor project. Normalization was performed with RMA algorithm
| | Sample_platform_id | GPL570
| | Sample_contact_name | emmanuelle,,meugnier
| | Sample_contact_email | meugnier@univ-lyon1.fr
| | Sample_contact_institute | INSERMU870/INRA1235
| | Sample_contact_address | Faculté de Médecine Lyon sud
| | Sample_contact_city | oullins
| | Sample_contact_zip/postal_code | 69600
| | Sample_contact_country | France
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM692nnn/GSM692714/suppl/GSM692714.CEL.gz
| | Sample_series_id | GSE28005
| | Sample_data_row_count | 54675
| | |
|
GSM692715 | GPL570 |
|
adipose tissue from subject#9 at day 0, biological replicate 7
|
human adipose tissue before the diet
|
subject: #9
bmi: Overweight
protocol: high fat diet
time: before the diet
tissue: adipose tissue
|
TA 9A
|
| Sample_geo_accession | GSM692715
| | Sample_status | Public on Mar 05 2012
| | Sample_submission_date | Mar 17 2011
| | Sample_last_update_date | Mar 05 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol adapted for small amounts of RNA from 100ng total RNA
| | Sample_hyb_protocol | Following fragmentation, 15µg of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array U133 Plus 2,0 . GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner GCS3000.
| | Sample_data_processing | The dataset was analyzed inside the R environment using packages from the BioConductor project. Normalization was performed with RMA algorithm
| | Sample_platform_id | GPL570
| | Sample_contact_name | emmanuelle,,meugnier
| | Sample_contact_email | meugnier@univ-lyon1.fr
| | Sample_contact_institute | INSERMU870/INRA1235
| | Sample_contact_address | Faculté de Médecine Lyon sud
| | Sample_contact_city | oullins
| | Sample_contact_zip/postal_code | 69600
| | Sample_contact_country | France
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM692nnn/GSM692715/suppl/GSM692715.CEL.gz
| | Sample_series_id | GSE28005
| | Sample_data_row_count | 54675
| | |
|
GSM692716 | GPL570 |
|
adipose tissue from subject#9 at day 14, biological replicate 7
|
human adipose tissue after 14 days of high fat diet
|
subject: #9
bmi: Overweight
protocol: high fat diet
time: after 14 days
tissue: adipose tissue
|
TA 9B
|
| Sample_geo_accession | GSM692716
| | Sample_status | Public on Mar 05 2012
| | Sample_submission_date | Mar 17 2011
| | Sample_last_update_date | Mar 05 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol adapted for small amounts of RNA from 100ng total RNA
| | Sample_hyb_protocol | Following fragmentation, 15µg of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array U133 Plus 2,0 . GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner GCS3000.
| | Sample_data_processing | The dataset was analyzed inside the R environment using packages from the BioConductor project. Normalization was performed with RMA algorithm
| | Sample_platform_id | GPL570
| | Sample_contact_name | emmanuelle,,meugnier
| | Sample_contact_email | meugnier@univ-lyon1.fr
| | Sample_contact_institute | INSERMU870/INRA1235
| | Sample_contact_address | Faculté de Médecine Lyon sud
| | Sample_contact_city | oullins
| | Sample_contact_zip/postal_code | 69600
| | Sample_contact_country | France
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM692nnn/GSM692716/suppl/GSM692716.CEL.gz
| | Sample_series_id | GSE28005
| | Sample_data_row_count | 54675
| | |
|
GSM692717 | GPL570 |
|
adipose tissue from subject#9 at day 56, biological replicate 7
|
human adipose tissue after 56 days of high fat diet
|
subject: #9
bmi: Overweight
protocol: high fat diet
time: after 56 days
tissue: adipose tissue
|
TA 9C
|
| Sample_geo_accession | GSM692717
| | Sample_status | Public on Mar 05 2012
| | Sample_submission_date | Mar 17 2011
| | Sample_last_update_date | Mar 05 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol adapted for small amounts of RNA from 100ng total RNA
| | Sample_hyb_protocol | Following fragmentation, 15µg of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array U133 Plus 2,0 . GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner GCS3000.
| | Sample_data_processing | The dataset was analyzed inside the R environment using packages from the BioConductor project. Normalization was performed with RMA algorithm
| | Sample_platform_id | GPL570
| | Sample_contact_name | emmanuelle,,meugnier
| | Sample_contact_email | meugnier@univ-lyon1.fr
| | Sample_contact_institute | INSERMU870/INRA1235
| | Sample_contact_address | Faculté de Médecine Lyon sud
| | Sample_contact_city | oullins
| | Sample_contact_zip/postal_code | 69600
| | Sample_contact_country | France
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM692nnn/GSM692717/suppl/GSM692717.CEL.gz
| | Sample_series_id | GSE28005
| | Sample_data_row_count | 54675
| | |
|
GSM692718 | GPL570 |
|
adipose tissue from subject#11 at day 0, biological replicate 8
|
human adipose tissue before the diet
|
subject: #11
bmi: Lean
protocol: high fat diet
time: before the diet
tissue: adipose tissue
|
TA 11A
|
| Sample_geo_accession | GSM692718
| | Sample_status | Public on Mar 05 2012
| | Sample_submission_date | Mar 17 2011
| | Sample_last_update_date | Mar 05 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol adapted for small amounts of RNA from 100ng total RNA
| | Sample_hyb_protocol | Following fragmentation, 15µg of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array U133 Plus 2,0 . GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner GCS3000.
| | Sample_data_processing | The dataset was analyzed inside the R environment using packages from the BioConductor project. Normalization was performed with RMA algorithm
| | Sample_platform_id | GPL570
| | Sample_contact_name | emmanuelle,,meugnier
| | Sample_contact_email | meugnier@univ-lyon1.fr
| | Sample_contact_institute | INSERMU870/INRA1235
| | Sample_contact_address | Faculté de Médecine Lyon sud
| | Sample_contact_city | oullins
| | Sample_contact_zip/postal_code | 69600
| | Sample_contact_country | France
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM692nnn/GSM692718/suppl/GSM692718.CEL.gz
| | Sample_series_id | GSE28005
| | Sample_data_row_count | 54675
| | |
|
GSM692719 | GPL570 |
|
adipose tissue from subject#11 at day 14, biological replicate 8
|
human adipose tissue after 14 days of high fat diet
|
subject: #11
bmi: Lean
protocol: high fat diet
time: after 14 days
tissue: adipose tissue
|
TA 11B
|
| Sample_geo_accession | GSM692719
| | Sample_status | Public on Mar 05 2012
| | Sample_submission_date | Mar 17 2011
| | Sample_last_update_date | Mar 05 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol adapted for small amounts of RNA from 100ng total RNA
| | Sample_hyb_protocol | Following fragmentation, 15µg of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array U133 Plus 2,0 . GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner GCS3000.
| | Sample_data_processing | The dataset was analyzed inside the R environment using packages from the BioConductor project. Normalization was performed with RMA algorithm
| | Sample_platform_id | GPL570
| | Sample_contact_name | emmanuelle,,meugnier
| | Sample_contact_email | meugnier@univ-lyon1.fr
| | Sample_contact_institute | INSERMU870/INRA1235
| | Sample_contact_address | Faculté de Médecine Lyon sud
| | Sample_contact_city | oullins
| | Sample_contact_zip/postal_code | 69600
| | Sample_contact_country | France
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM692nnn/GSM692719/suppl/GSM692719.CEL.gz
| | Sample_series_id | GSE28005
| | Sample_data_row_count | 54675
| | |
|
GSM692720 | GPL570 |
|
adipose tissue from subject#11 at day 56, biological replicate 8
|
human adipose tissue after 56 days of high fat diet
|
subject: #11
bmi: Lean
protocol: high fat diet
time: after 56 days
tissue: adipose tissue
|
TA 11C
|
| Sample_geo_accession | GSM692720
| | Sample_status | Public on Mar 05 2012
| | Sample_submission_date | Mar 17 2011
| | Sample_last_update_date | Mar 05 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol adapted for small amounts of RNA from 100ng total RNA
| | Sample_hyb_protocol | Following fragmentation, 15µg of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array U133 Plus 2,0 . GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner GCS3000.
| | Sample_data_processing | The dataset was analyzed inside the R environment using packages from the BioConductor project. Normalization was performed with RMA algorithm
| | Sample_platform_id | GPL570
| | Sample_contact_name | emmanuelle,,meugnier
| | Sample_contact_email | meugnier@univ-lyon1.fr
| | Sample_contact_institute | INSERMU870/INRA1235
| | Sample_contact_address | Faculté de Médecine Lyon sud
| | Sample_contact_city | oullins
| | Sample_contact_zip/postal_code | 69600
| | Sample_contact_country | France
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM692nnn/GSM692720/suppl/GSM692720.CEL.gz
| | Sample_series_id | GSE28005
| | Sample_data_row_count | 54675
| | |
|
GSM692721 | GPL570 |
|
adipose tissue from subject#12 at day 0, biological replicate 9
|
human adipose tissue before the diet
|
subject: #12
bmi: Overweight
protocol: high fat diet
time: before the diet
tissue: adipose tissue
|
TA 12A
|
| Sample_geo_accession | GSM692721
| | Sample_status | Public on Mar 05 2012
| | Sample_submission_date | Mar 17 2011
| | Sample_last_update_date | Mar 05 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol adapted for small amounts of RNA from 100ng total RNA
| | Sample_hyb_protocol | Following fragmentation, 15µg of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array U133 Plus 2,0 . GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner GCS3000.
| | Sample_data_processing | The dataset was analyzed inside the R environment using packages from the BioConductor project. Normalization was performed with RMA algorithm
| | Sample_platform_id | GPL570
| | Sample_contact_name | emmanuelle,,meugnier
| | Sample_contact_email | meugnier@univ-lyon1.fr
| | Sample_contact_institute | INSERMU870/INRA1235
| | Sample_contact_address | Faculté de Médecine Lyon sud
| | Sample_contact_city | oullins
| | Sample_contact_zip/postal_code | 69600
| | Sample_contact_country | France
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM692nnn/GSM692721/suppl/GSM692721.CEL.gz
| | Sample_series_id | GSE28005
| | Sample_data_row_count | 54675
| | |
|
GSM692722 | GPL570 |
|
adipose tissue from subject#12 at day 14, biological replicate 9
|
human adipose tissue after 14 days of high fat diet
|
subject: #12
bmi: Overweight
protocol: high fat diet
time: after 14 days
tissue: adipose tissue
|
TA 12B
|
| Sample_geo_accession | GSM692722
| | Sample_status | Public on Mar 05 2012
| | Sample_submission_date | Mar 17 2011
| | Sample_last_update_date | Mar 05 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol adapted for small amounts of RNA from 100ng total RNA
| | Sample_hyb_protocol | Following fragmentation, 15µg of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array U133 Plus 2,0 . GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner GCS3000.
| | Sample_data_processing | The dataset was analyzed inside the R environment using packages from the BioConductor project. Normalization was performed with RMA algorithm
| | Sample_platform_id | GPL570
| | Sample_contact_name | emmanuelle,,meugnier
| | Sample_contact_email | meugnier@univ-lyon1.fr
| | Sample_contact_institute | INSERMU870/INRA1235
| | Sample_contact_address | Faculté de Médecine Lyon sud
| | Sample_contact_city | oullins
| | Sample_contact_zip/postal_code | 69600
| | Sample_contact_country | France
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM692nnn/GSM692722/suppl/GSM692722.CEL.gz
| | Sample_series_id | GSE28005
| | Sample_data_row_count | 54675
| | |
|
GSM692723 | GPL570 |
|
adipose tissue from subject#12 at day 56, biological replicate 9
|
human adipose tissue after 56 days of high fat diet
|
subject: #12
bmi: Overweight
protocol: high fat diet
time: after 56 days
tissue: adipose tissue
|
TA 12C
|
| Sample_geo_accession | GSM692723
| | Sample_status | Public on Mar 05 2012
| | Sample_submission_date | Mar 17 2011
| | Sample_last_update_date | Mar 05 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol adapted for small amounts of RNA from 100ng total RNA
| | Sample_hyb_protocol | Following fragmentation, 15µg of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array U133 Plus 2,0 . GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner GCS3000.
| | Sample_data_processing | The dataset was analyzed inside the R environment using packages from the BioConductor project. Normalization was performed with RMA algorithm
| | Sample_platform_id | GPL570
| | Sample_contact_name | emmanuelle,,meugnier
| | Sample_contact_email | meugnier@univ-lyon1.fr
| | Sample_contact_institute | INSERMU870/INRA1235
| | Sample_contact_address | Faculté de Médecine Lyon sud
| | Sample_contact_city | oullins
| | Sample_contact_zip/postal_code | 69600
| | Sample_contact_country | France
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM692nnn/GSM692723/suppl/GSM692723.CEL.gz
| | Sample_series_id | GSE28005
| | Sample_data_row_count | 54675
| | |
|
GSM692724 | GPL570 |
|
adipose tissue from subject#15 at day 0, biological replicate 10
|
human adipose tissue before the diet
|
subject: #15
bmi: Lean
protocol: high fat diet
time: before the diet
tissue: adipose tissue
|
TA 15A
|
| Sample_geo_accession | GSM692724
| | Sample_status | Public on Mar 05 2012
| | Sample_submission_date | Mar 17 2011
| | Sample_last_update_date | Mar 05 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol adapted for small amounts of RNA from 100ng total RNA
| | Sample_hyb_protocol | Following fragmentation, 15µg of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array U133 Plus 2,0 . GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner GCS3000.
| | Sample_data_processing | The dataset was analyzed inside the R environment using packages from the BioConductor project. Normalization was performed with RMA algorithm
| | Sample_platform_id | GPL570
| | Sample_contact_name | emmanuelle,,meugnier
| | Sample_contact_email | meugnier@univ-lyon1.fr
| | Sample_contact_institute | INSERMU870/INRA1235
| | Sample_contact_address | Faculté de Médecine Lyon sud
| | Sample_contact_city | oullins
| | Sample_contact_zip/postal_code | 69600
| | Sample_contact_country | France
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM692nnn/GSM692724/suppl/GSM692724.CEL.gz
| | Sample_series_id | GSE28005
| | Sample_data_row_count | 54675
| | |
|
GSM692725 | GPL570 |
|
adipose tissue from subject#15 at day 14, biological replicate 10
|
human adipose tissue after 14 days of high fat diet
|
subject: #15
bmi: Lean
protocol: high fat diet
time: after 14 days
tissue: adipose tissue
|
TA 15B
|
| Sample_geo_accession | GSM692725
| | Sample_status | Public on Mar 05 2012
| | Sample_submission_date | Mar 17 2011
| | Sample_last_update_date | Mar 05 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol adapted for small amounts of RNA from 100ng total RNA
| | Sample_hyb_protocol | Following fragmentation, 15µg of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array U133 Plus 2,0 . GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner GCS3000.
| | Sample_data_processing | The dataset was analyzed inside the R environment using packages from the BioConductor project. Normalization was performed with RMA algorithm
| | Sample_platform_id | GPL570
| | Sample_contact_name | emmanuelle,,meugnier
| | Sample_contact_email | meugnier@univ-lyon1.fr
| | Sample_contact_institute | INSERMU870/INRA1235
| | Sample_contact_address | Faculté de Médecine Lyon sud
| | Sample_contact_city | oullins
| | Sample_contact_zip/postal_code | 69600
| | Sample_contact_country | France
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM692nnn/GSM692725/suppl/GSM692725.CEL.gz
| | Sample_series_id | GSE28005
| | Sample_data_row_count | 54675
| | |
|
GSM692726 | GPL570 |
|
adipose tissue from subject#16 at day 0, biological replicate 11
|
human adipose tissue before the diet
|
subject: #16
bmi: Overweight
protocol: high fat diet
time: before the diet
tissue: adipose tissue
|
TA 16A
|
| Sample_geo_accession | GSM692726
| | Sample_status | Public on Mar 05 2012
| | Sample_submission_date | Mar 17 2011
| | Sample_last_update_date | Mar 05 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol adapted for small amounts of RNA from 100ng total RNA
| | Sample_hyb_protocol | Following fragmentation, 15µg of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array U133 Plus 2,0 . GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner GCS3000.
| | Sample_data_processing | The dataset was analyzed inside the R environment using packages from the BioConductor project. Normalization was performed with RMA algorithm
| | Sample_platform_id | GPL570
| | Sample_contact_name | emmanuelle,,meugnier
| | Sample_contact_email | meugnier@univ-lyon1.fr
| | Sample_contact_institute | INSERMU870/INRA1235
| | Sample_contact_address | Faculté de Médecine Lyon sud
| | Sample_contact_city | oullins
| | Sample_contact_zip/postal_code | 69600
| | Sample_contact_country | France
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM692nnn/GSM692726/suppl/GSM692726.CEL.gz
| | Sample_series_id | GSE28005
| | Sample_data_row_count | 54675
| | |
|
GSM692727 | GPL570 |
|
adipose tissue from subject#16 at day 14, biological replicate 11
|
human adipose tissue after 14 days of high fat diet
|
subject: #16
bmi: Overweight
protocol: high fat diet
time: after 14 days
tissue: adipose tissue
|
TA 16B
|
| Sample_geo_accession | GSM692727
| | Sample_status | Public on Mar 05 2012
| | Sample_submission_date | Mar 17 2011
| | Sample_last_update_date | Mar 05 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol adapted for small amounts of RNA from 100ng total RNA
| | Sample_hyb_protocol | Following fragmentation, 15µg of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array U133 Plus 2,0 . GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner GCS3000.
| | Sample_data_processing | The dataset was analyzed inside the R environment using packages from the BioConductor project. Normalization was performed with RMA algorithm
| | Sample_platform_id | GPL570
| | Sample_contact_name | emmanuelle,,meugnier
| | Sample_contact_email | meugnier@univ-lyon1.fr
| | Sample_contact_institute | INSERMU870/INRA1235
| | Sample_contact_address | Faculté de Médecine Lyon sud
| | Sample_contact_city | oullins
| | Sample_contact_zip/postal_code | 69600
| | Sample_contact_country | France
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM692nnn/GSM692727/suppl/GSM692727.CEL.gz
| | Sample_series_id | GSE28005
| | Sample_data_row_count | 54675
| | |
|
GSM692728 | GPL570 |
|
adipose tissue from subject#16 at day 56, biological replicate 11
|
human adipose tissue after 56 days of high fat diet
|
subject: #16
bmi: Overweight
protocol: high fat diet
time: after 56 days
tissue: adipose tissue
|
TA 16C
|
| Sample_geo_accession | GSM692728
| | Sample_status | Public on Mar 05 2012
| | Sample_submission_date | Mar 17 2011
| | Sample_last_update_date | Mar 05 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol adapted for small amounts of RNA from 100ng total RNA
| | Sample_hyb_protocol | Following fragmentation, 15µg of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array U133 Plus 2,0 . GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner GCS3000.
| | Sample_data_processing | The dataset was analyzed inside the R environment using packages from the BioConductor project. Normalization was performed with RMA algorithm
| | Sample_platform_id | GPL570
| | Sample_contact_name | emmanuelle,,meugnier
| | Sample_contact_email | meugnier@univ-lyon1.fr
| | Sample_contact_institute | INSERMU870/INRA1235
| | Sample_contact_address | Faculté de Médecine Lyon sud
| | Sample_contact_city | oullins
| | Sample_contact_zip/postal_code | 69600
| | Sample_contact_country | France
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM692nnn/GSM692728/suppl/GSM692728.CEL.gz
| | Sample_series_id | GSE28005
| | Sample_data_row_count | 54675
| | |
|
GSM692729 | GPL570 |
|
adipose tissue from subject#17 at day 0, biological replicate 12
|
human adipose tissue before the diet
|
subject: #17
bmi: Lean
protocol: high fat diet
time: before the diet
tissue: adipose tissue
|
TA 17A
|
| Sample_geo_accession | GSM692729
| | Sample_status | Public on Mar 05 2012
| | Sample_submission_date | Mar 17 2011
| | Sample_last_update_date | Mar 05 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol adapted for small amounts of RNA from 100ng total RNA
| | Sample_hyb_protocol | Following fragmentation, 15µg of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array U133 Plus 2,0 . GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner GCS3000.
| | Sample_data_processing | The dataset was analyzed inside the R environment using packages from the BioConductor project. Normalization was performed with RMA algorithm
| | Sample_platform_id | GPL570
| | Sample_contact_name | emmanuelle,,meugnier
| | Sample_contact_email | meugnier@univ-lyon1.fr
| | Sample_contact_institute | INSERMU870/INRA1235
| | Sample_contact_address | Faculté de Médecine Lyon sud
| | Sample_contact_city | oullins
| | Sample_contact_zip/postal_code | 69600
| | Sample_contact_country | France
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM692nnn/GSM692729/suppl/GSM692729.CEL.gz
| | Sample_series_id | GSE28005
| | Sample_data_row_count | 54675
| | |
|
GSM692730 | GPL570 |
|
adipose tissue from subject#17 at day 14, biological replicate 12
|
human adipose tissue after 14 days of high fat diet
|
subject: #17
bmi: Lean
protocol: high fat diet
time: after 14 days
tissue: adipose tissue
|
TA 17B
|
| Sample_geo_accession | GSM692730
| | Sample_status | Public on Mar 05 2012
| | Sample_submission_date | Mar 17 2011
| | Sample_last_update_date | Mar 05 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol adapted for small amounts of RNA from 100ng total RNA
| | Sample_hyb_protocol | Following fragmentation, 15µg of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array U133 Plus 2,0 . GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner GCS3000.
| | Sample_data_processing | The dataset was analyzed inside the R environment using packages from the BioConductor project. Normalization was performed with RMA algorithm
| | Sample_platform_id | GPL570
| | Sample_contact_name | emmanuelle,,meugnier
| | Sample_contact_email | meugnier@univ-lyon1.fr
| | Sample_contact_institute | INSERMU870/INRA1235
| | Sample_contact_address | Faculté de Médecine Lyon sud
| | Sample_contact_city | oullins
| | Sample_contact_zip/postal_code | 69600
| | Sample_contact_country | France
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM692nnn/GSM692730/suppl/GSM692730.CEL.gz
| | Sample_series_id | GSE28005
| | Sample_data_row_count | 54675
| | |
|
GSM692731 | GPL570 |
|
adipose tissue from subject#17 at day 56, biological replicate 12
|
human adipose tissue after 56 days of high fat diet
|
subject: #17
bmi: Lean
protocol: high fat diet
time: after 56 days
tissue: adipose tissue
|
TA 17C
|
| Sample_geo_accession | GSM692731
| | Sample_status | Public on Mar 05 2012
| | Sample_submission_date | Mar 17 2011
| | Sample_last_update_date | Mar 05 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol adapted for small amounts of RNA from 100ng total RNA
| | Sample_hyb_protocol | Following fragmentation, 15µg of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array U133 Plus 2,0 . GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner GCS3000.
| | Sample_data_processing | The dataset was analyzed inside the R environment using packages from the BioConductor project. Normalization was performed with RMA algorithm
| | Sample_platform_id | GPL570
| | Sample_contact_name | emmanuelle,,meugnier
| | Sample_contact_email | meugnier@univ-lyon1.fr
| | Sample_contact_institute | INSERMU870/INRA1235
| | Sample_contact_address | Faculté de Médecine Lyon sud
| | Sample_contact_city | oullins
| | Sample_contact_zip/postal_code | 69600
| | Sample_contact_country | France
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM692nnn/GSM692731/suppl/GSM692731.CEL.gz
| | Sample_series_id | GSE28005
| | Sample_data_row_count | 54675
| | |
|
GSM692732 | GPL570 |
|
adipose tissue from subject#18 at day 0, biological replicate 13
|
human adipose tissue before the diet
|
subject: #18
bmi: Lean
protocol: high fat diet
time: before the diet
tissue: adipose tissue
|
TA 18A
|
| Sample_geo_accession | GSM692732
| | Sample_status | Public on Mar 05 2012
| | Sample_submission_date | Mar 17 2011
| | Sample_last_update_date | Mar 05 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol adapted for small amounts of RNA from 100ng total RNA
| | Sample_hyb_protocol | Following fragmentation, 15µg of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array U133 Plus 2,0 . GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner GCS3000.
| | Sample_data_processing | The dataset was analyzed inside the R environment using packages from the BioConductor project. Normalization was performed with RMA algorithm
| | Sample_platform_id | GPL570
| | Sample_contact_name | emmanuelle,,meugnier
| | Sample_contact_email | meugnier@univ-lyon1.fr
| | Sample_contact_institute | INSERMU870/INRA1235
| | Sample_contact_address | Faculté de Médecine Lyon sud
| | Sample_contact_city | oullins
| | Sample_contact_zip/postal_code | 69600
| | Sample_contact_country | France
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM692nnn/GSM692732/suppl/GSM692732.CEL.gz
| | Sample_series_id | GSE28005
| | Sample_data_row_count | 54675
| | |
|
GSM692733 | GPL570 |
|
adipose tissue from subject#18 at day 14, biological replicate 13
|
human adipose tissue after 14 days of high fat diet
|
subject: #18
bmi: Lean
protocol: high fat diet
time: after 14 days
tissue: adipose tissue
|
TA 18B
|
| Sample_geo_accession | GSM692733
| | Sample_status | Public on Mar 05 2012
| | Sample_submission_date | Mar 17 2011
| | Sample_last_update_date | Mar 05 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol adapted for small amounts of RNA from 100ng total RNA
| | Sample_hyb_protocol | Following fragmentation, 15µg of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array U133 Plus 2,0 . GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner GCS3000.
| | Sample_data_processing | The dataset was analyzed inside the R environment using packages from the BioConductor project. Normalization was performed with RMA algorithm
| | Sample_platform_id | GPL570
| | Sample_contact_name | emmanuelle,,meugnier
| | Sample_contact_email | meugnier@univ-lyon1.fr
| | Sample_contact_institute | INSERMU870/INRA1235
| | Sample_contact_address | Faculté de Médecine Lyon sud
| | Sample_contact_city | oullins
| | Sample_contact_zip/postal_code | 69600
| | Sample_contact_country | France
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM692nnn/GSM692733/suppl/GSM692733.CEL.gz
| | Sample_series_id | GSE28005
| | Sample_data_row_count | 54675
| | |
|
GSM692734 | GPL570 |
|
adipose tissue from subject#18 at day 56, biological replicate 13
|
human adipose tissue after 56 days of high fat diet
|
subject: #18
bmi: Lean
protocol: high fat diet
time: after 56 days
tissue: adipose tissue
|
TA 18C
|
| Sample_geo_accession | GSM692734
| | Sample_status | Public on Mar 05 2012
| | Sample_submission_date | Mar 17 2011
| | Sample_last_update_date | Mar 05 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol adapted for small amounts of RNA from 100ng total RNA
| | Sample_hyb_protocol | Following fragmentation, 15µg of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array U133 Plus 2,0 . GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner GCS3000.
| | Sample_data_processing | The dataset was analyzed inside the R environment using packages from the BioConductor project. Normalization was performed with RMA algorithm
| | Sample_platform_id | GPL570
| | Sample_contact_name | emmanuelle,,meugnier
| | Sample_contact_email | meugnier@univ-lyon1.fr
| | Sample_contact_institute | INSERMU870/INRA1235
| | Sample_contact_address | Faculté de Médecine Lyon sud
| | Sample_contact_city | oullins
| | Sample_contact_zip/postal_code | 69600
| | Sample_contact_country | France
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM692nnn/GSM692734/suppl/GSM692734.CEL.gz
| | Sample_series_id | GSE28005
| | Sample_data_row_count | 54675
| | |
|
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