Search results for the GEO ID: GSE28057 |
(Click on the check boxes provided under "Select for analysis", to initiate grouping) |
(Once the selection is made, click on "Add groups" in "Make groups for comparison", to make a group. Scroll down) |
|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM694017 | GPL570 |
|
Huh7 NTC
|
Huh7 non-target control
|
tissue: Liver
cell line: Huh7
|
|
Sample_geo_accession | GSM694017
| Sample_status | Public on Jan 01 2012
| Sample_submission_date | Mar 21 2011
| Sample_last_update_date | Jan 01 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Huh7 cells lentivirally transduced with shRNA CD24 (knockdown) or non-target control
| Sample_growth_protocol_ch1 | Huh7 cells grown in DMEM medium supplemented with 10% FBS and 1% penicillin and streptomycin
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Service by Genome Research Centre of the University of Hong Kong
| Sample_hyb_protocol | Service by Genome Research Centre of the University of Hong Kong
| Sample_scan_protocol | Service by Genome Research Centre of the University of Hong Kong
| Sample_data_processing | The data were analyzed with RMA using Affymetrix default analysis settings and global scaling as normalization method; and Ingenuity Pathway Analysis
| Sample_platform_id | GPL570
| Sample_contact_name | Kin Wah,,Lee
| Sample_contact_email | tkwlee@hkucc.hku.hk
| Sample_contact_institute | The University of Hong Kong
| Sample_contact_address | 21 Sassoon Road
| Sample_contact_city | Hong Kong
| Sample_contact_zip/postal_code | NA
| Sample_contact_country | China
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM694nnn/GSM694017/suppl/GSM694017_Huh7_NTC.CEL.gz
| Sample_series_id | GSE28057
| Sample_data_row_count | 54675
| |
|
GSM694018 | GPL570 |
|
Huh7 shRNA CD24
|
Huh7 shRNA CD24 (knockdown)
|
tissue: Liver
cell line: Huh7
|
|
Sample_geo_accession | GSM694018
| Sample_status | Public on Jan 01 2012
| Sample_submission_date | Mar 21 2011
| Sample_last_update_date | Jan 01 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Huh7 cells lentivirally transduced with shRNA CD24 (knockdown) or non-target control
| Sample_growth_protocol_ch1 | Huh7 cells grown in DMEM medium supplemented with 10% FBS and 1% penicillin and streptomycin
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Service by Genome Research Centre of the University of Hong Kong
| Sample_hyb_protocol | Service by Genome Research Centre of the University of Hong Kong
| Sample_scan_protocol | Service by Genome Research Centre of the University of Hong Kong
| Sample_data_processing | The data were analyzed with RMA using Affymetrix default analysis settings and global scaling as normalization method; and Ingenuity Pathway Analysis
| Sample_platform_id | GPL570
| Sample_contact_name | Kin Wah,,Lee
| Sample_contact_email | tkwlee@hkucc.hku.hk
| Sample_contact_institute | The University of Hong Kong
| Sample_contact_address | 21 Sassoon Road
| Sample_contact_city | Hong Kong
| Sample_contact_zip/postal_code | NA
| Sample_contact_country | China
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM694nnn/GSM694018/suppl/GSM694018_Huh7_shRNA_CD24.CEL.gz
| Sample_series_id | GSE28057
| Sample_data_row_count | 54675
| |
|
|
|
Make groups for comparisons |
(2 groups will be compared at a time) |
|
Select GSMs and click on "Add groups" |
Enter the group name here: |
|
|
|
Select expression type |
Transcripts profile based on; |
A. Differential status (Up/Down regulation) |
|
|
Regulation type |
|
Fold change |
|
p-value |
|
|
|
B. Absolute calls (Transcribed/Not-detected) |
|
|
Derive calls within/across groups |
Within groups |
|
|
Detection status |
|
Percentage detection |
|
|
Across groups |
|
|
Detection status |
First group: |
- |
Second group:
|
Percentage detection |
First group: |
- |
Second group:
|
|
|
|
Filter results by number of probes |
|
|