Search results for the GEO ID: GSE28130  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM696984 | GPL1261 |
|
activated Treg, biological replica 1
|
activated Treg cells
|
genetic background: mixed, predominant C57BL/6
cell type: activated Treg CD4+ Foxp3+ cells
|
|
| Sample_geo_accession | GSM696984
| | Sample_status | Public on Jan 18 2012
| | Sample_submission_date | Mar 23 2011
| | Sample_last_update_date | Jan 18 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Adaptive Treg cells were generated in the presence of IL-2 (50 u/ml) and TGF-beta (3 ng/ml), actiavted Treg cells were produced by stimulation with plate - bound anti-CD3, anti-CD28 antibodies
| | Sample_growth_protocol_ch1 | Cells were activated in vitro by plate - bound anti-CD3, anti-CD28 antibodies
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated from the cells of different samples using RNeasy Mini Kit spin columns (Qiagen)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotin, total RNA was labeled according to Eberwine protocol using Target Amp kit, Epicentre
| | Sample_hyb_protocol | Hybridization according to Affymetrix protocol, 45 degrees celcius, 16 hours, 50 rpm
| | Sample_scan_protocol | Scanned on Affymetrix scanner 3000 with 7G upgrade
| | Sample_data_processing | The data were condensed with RMA transformation algorithm using the R (Bioconductor) - an open source and open development software project for the analysis and comprehension of genomic data.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Piotr,,Kraj
| | Sample_contact_email | pkraj@mail.mcg.edu
| | Sample_contact_phone | 706 721 7281
| | Sample_contact_fax | 706 721 3482
| | Sample_contact_laboratory | CA-4141
| | Sample_contact_department | Centr. for Biotech. and Gen. Medicine
| | Sample_contact_institute | Medical College of Georgia
| | Sample_contact_address | 1120 15th Street
| | Sample_contact_city | Augusta
| | Sample_contact_state | GA
| | Sample_contact_zip/postal_code | 30912
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM696nnn/GSM696984/suppl/GSM696984_aTreg_1.CEL.gz
| | Sample_series_id | GSE28130
| | Sample_data_row_count | 45101
| | |
|
GSM696985 | GPL1261 |
|
activated Treg, biological replica 2
|
activated Treg cells
|
genetic background: mixed, predominant C57BL/6
cell type: activated Treg CD4+ Foxp3+ cells
|
|
| Sample_geo_accession | GSM696985
| | Sample_status | Public on Jan 18 2012
| | Sample_submission_date | Mar 23 2011
| | Sample_last_update_date | Jan 18 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Adaptive Treg cells were generated in the presence of IL-2 (50 u/ml) and TGF-beta (3 ng/ml), actiavted Treg cells were produced by stimulation with plate - bound anti-CD3, anti-CD28 antibodies
| | Sample_growth_protocol_ch1 | Cells were activated in vitro by plate - bound anti-CD3, anti-CD28 antibodies
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated from the cells of different samples using RNeasy Mini Kit spin columns (Qiagen)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotin, total RNA was labeled according to Eberwine protocol using Target Amp kit, Epicentre
| | Sample_hyb_protocol | Hybridization according to Affymetrix protocol, 45 degrees celcius, 16 hours, 50 rpm
| | Sample_scan_protocol | Scanned on Affymetrix scanner 3000 with 7G upgrade
| | Sample_data_processing | The data were condensed with RMA transformation algorithm using the R (Bioconductor) - an open source and open development software project for the analysis and comprehension of genomic data.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Piotr,,Kraj
| | Sample_contact_email | pkraj@mail.mcg.edu
| | Sample_contact_phone | 706 721 7281
| | Sample_contact_fax | 706 721 3482
| | Sample_contact_laboratory | CA-4141
| | Sample_contact_department | Centr. for Biotech. and Gen. Medicine
| | Sample_contact_institute | Medical College of Georgia
| | Sample_contact_address | 1120 15th Street
| | Sample_contact_city | Augusta
| | Sample_contact_state | GA
| | Sample_contact_zip/postal_code | 30912
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM696nnn/GSM696985/suppl/GSM696985_aTreg_2.CEL.gz
| | Sample_series_id | GSE28130
| | Sample_data_row_count | 45101
| | |
|
GSM696986 | GPL1261 |
|
induced Treg, biological replica 1
|
induced Treg cells
|
genetic background: mixed, predominant C57BL/6
cell type: induced Treg CD4+ Foxp3+ cells
|
|
| Sample_geo_accession | GSM696986
| | Sample_status | Public on Jan 18 2012
| | Sample_submission_date | Mar 23 2011
| | Sample_last_update_date | Jan 18 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Adaptive Treg cells were generated in the presence of IL-2 (50 u/ml) and TGF-beta (3 ng/ml), actiavted Treg cells were produced by stimulation with plate - bound anti-CD3, anti-CD28 antibodies
| | Sample_growth_protocol_ch1 | Cells were activated in vitro by plate - bound anti-CD3, anti-CD28 antibodies
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated from the cells of different samples using RNeasy Mini Kit spin columns (Qiagen)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotin, total RNA was labeled according to Eberwine protocol using Target Amp kit, Epicentre
| | Sample_hyb_protocol | Hybridization according to Affymetrix protocol, 45 degrees celcius, 16 hours, 50 rpm
| | Sample_scan_protocol | Scanned on Affymetrix scanner 3000 with 7G upgrade
| | Sample_data_processing | The data were condensed with RMA transformation algorithm using the R (Bioconductor) - an open source and open development software project for the analysis and comprehension of genomic data.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Piotr,,Kraj
| | Sample_contact_email | pkraj@mail.mcg.edu
| | Sample_contact_phone | 706 721 7281
| | Sample_contact_fax | 706 721 3482
| | Sample_contact_laboratory | CA-4141
| | Sample_contact_department | Centr. for Biotech. and Gen. Medicine
| | Sample_contact_institute | Medical College of Georgia
| | Sample_contact_address | 1120 15th Street
| | Sample_contact_city | Augusta
| | Sample_contact_state | GA
| | Sample_contact_zip/postal_code | 30912
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM696nnn/GSM696986/suppl/GSM696986_iTreg_1.CEL.gz
| | Sample_series_id | GSE28130
| | Sample_data_row_count | 45101
| | |
|
GSM696987 | GPL1261 |
|
induced Treg, biological replica 2
|
induced Treg cells
|
genetic background: mixed, predominant C57BL/6
cell type: induced Treg CD4+ Foxp3+ cells
|
|
| Sample_geo_accession | GSM696987
| | Sample_status | Public on Jan 18 2012
| | Sample_submission_date | Mar 23 2011
| | Sample_last_update_date | Jan 18 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Adaptive Treg cells were generated in the presence of IL-2 (50 u/ml) and TGF-beta (3 ng/ml), actiavted Treg cells were produced by stimulation with plate - bound anti-CD3, anti-CD28 antibodies
| | Sample_growth_protocol_ch1 | Cells were activated in vitro by plate - bound anti-CD3, anti-CD28 antibodies
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated from the cells of different samples using RNeasy Mini Kit spin columns (Qiagen)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotin, total RNA was labeled according to Eberwine protocol using Target Amp kit, Epicentre
| | Sample_hyb_protocol | Hybridization according to Affymetrix protocol, 45 degrees celcius, 16 hours, 50 rpm
| | Sample_scan_protocol | Scanned on Affymetrix scanner 3000 with 7G upgrade
| | Sample_data_processing | The data were condensed with RMA transformation algorithm using the R (Bioconductor) - an open source and open development software project for the analysis and comprehension of genomic data.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Piotr,,Kraj
| | Sample_contact_email | pkraj@mail.mcg.edu
| | Sample_contact_phone | 706 721 7281
| | Sample_contact_fax | 706 721 3482
| | Sample_contact_laboratory | CA-4141
| | Sample_contact_department | Centr. for Biotech. and Gen. Medicine
| | Sample_contact_institute | Medical College of Georgia
| | Sample_contact_address | 1120 15th Street
| | Sample_contact_city | Augusta
| | Sample_contact_state | GA
| | Sample_contact_zip/postal_code | 30912
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM696nnn/GSM696987/suppl/GSM696987_iTreg_2.CEL.gz
| | Sample_series_id | GSE28130
| | Sample_data_row_count | 45101
| | |
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