Search results for the GEO ID: GSE28133  |
(Click on the check boxes provided under "Select for analysis", to initiate grouping) |
(Once the selection is made, click on "Add groups" in "Make groups for comparison", to make a group. Scroll down) |
|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM697014 | GPL570 |
|
CTR1
|
retina
|
retinal detachment: no
patient identifier: CTR1
total rd duration: 0 weeks
|
retina free of retinal pigment epithelium (RPE)
|
| Sample_geo_accession | GSM697014
| | Sample_status | Public on Mar 06 2012
| | Sample_submission_date | Mar 23 2011
| | Sample_last_update_date | Mar 07 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Retina samples were collected from patients with or without rhegmatogenous retinal detachment (RD)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Retinal tissue was dissected free of retinal pigment epithelium (RPE) and placed in guanidine HCL. The samples were subsequently disrupted and homogenized using a rotor–stator (Polytron PT2100). Total RNA used for microarray studies was purified from a caesium chloride gradient produced by high-speed ultra-centrifugation.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared from the total RNA according to the Affymetrix protocol (Expression Analysis Technical Manual Rev. 2, 2005-2007, Affymetrix)
| | Sample_hyb_protocol | Following fragmentation, cRNA was hybridized on the GeneChip Array and the GeneChips were washed and stained in the Affymetrix Fluidics Station 450 according to the standard Affymetrix protocol (Expression Analysis Technical Manual Rev. 2, 2005-2007, Affymetrix).
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip 3000 7G scanner
| | Sample_data_processing | GCRMA
| | Sample_platform_id | GPL570
| | Sample_contact_name | Wolfgang,,Raffelsberger
| | Sample_contact_email | w.raffelsberger@unistra.fr
| | Sample_contact_laboratory | LBGI
| | Sample_contact_department | DBGS
| | Sample_contact_institute | IGBMC
| | Sample_contact_address | 1 rue Laurent Fries
| | Sample_contact_city | Illkirch/Strasbourg
| | Sample_contact_zip/postal_code | 67404
| | Sample_contact_country | France
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM697nnn/GSM697014/suppl/GSM697014.CEL.gz
| | Sample_series_id | GSE28133
| | Sample_data_row_count | 54675
| | |
|
GSM697015 | GPL570 |
|
CTR2
|
retina
|
retinal detachment: no
patient identifier: CTR2
total rd duration: 0 weeks
|
retina free of retinal pigment epithelium (RPE)
|
| Sample_geo_accession | GSM697015
| | Sample_status | Public on Mar 06 2012
| | Sample_submission_date | Mar 23 2011
| | Sample_last_update_date | Mar 07 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Retina samples were collected from patients with or without rhegmatogenous retinal detachment (RD)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Retinal tissue was dissected free of retinal pigment epithelium (RPE) and placed in guanidine HCL. The samples were subsequently disrupted and homogenized using a rotor–stator (Polytron PT2100). Total RNA used for microarray studies was purified from a caesium chloride gradient produced by high-speed ultra-centrifugation.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared from the total RNA according to the Affymetrix protocol (Expression Analysis Technical Manual Rev. 2, 2005-2007, Affymetrix)
| | Sample_hyb_protocol | Following fragmentation, cRNA was hybridized on the GeneChip Array and the GeneChips were washed and stained in the Affymetrix Fluidics Station 450 according to the standard Affymetrix protocol (Expression Analysis Technical Manual Rev. 2, 2005-2007, Affymetrix).
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip 3000 7G scanner
| | Sample_data_processing | GCRMA
| | Sample_platform_id | GPL570
| | Sample_contact_name | Wolfgang,,Raffelsberger
| | Sample_contact_email | w.raffelsberger@unistra.fr
| | Sample_contact_laboratory | LBGI
| | Sample_contact_department | DBGS
| | Sample_contact_institute | IGBMC
| | Sample_contact_address | 1 rue Laurent Fries
| | Sample_contact_city | Illkirch/Strasbourg
| | Sample_contact_zip/postal_code | 67404
| | Sample_contact_country | France
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM697nnn/GSM697015/suppl/GSM697015.CEL.gz
| | Sample_series_id | GSE28133
| | Sample_data_row_count | 54675
| | |
|
GSM697016 | GPL570 |
|
CTR3
|
retina
|
retinal detachment: no
patient identifier: CTR3
total rd duration: 0 weeks
|
retina free of retinal pigment epithelium (RPE)
|
| Sample_geo_accession | GSM697016
| | Sample_status | Public on Mar 06 2012
| | Sample_submission_date | Mar 23 2011
| | Sample_last_update_date | Mar 07 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Retina samples were collected from patients with or without rhegmatogenous retinal detachment (RD)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Retinal tissue was dissected free of retinal pigment epithelium (RPE) and placed in guanidine HCL. The samples were subsequently disrupted and homogenized using a rotor–stator (Polytron PT2100). Total RNA used for microarray studies was purified from a caesium chloride gradient produced by high-speed ultra-centrifugation.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared from the total RNA according to the Affymetrix protocol (Expression Analysis Technical Manual Rev. 2, 2005-2007, Affymetrix)
| | Sample_hyb_protocol | Following fragmentation, cRNA was hybridized on the GeneChip Array and the GeneChips were washed and stained in the Affymetrix Fluidics Station 450 according to the standard Affymetrix protocol (Expression Analysis Technical Manual Rev. 2, 2005-2007, Affymetrix).
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip 3000 7G scanner
| | Sample_data_processing | GCRMA
| | Sample_platform_id | GPL570
| | Sample_contact_name | Wolfgang,,Raffelsberger
| | Sample_contact_email | w.raffelsberger@unistra.fr
| | Sample_contact_laboratory | LBGI
| | Sample_contact_department | DBGS
| | Sample_contact_institute | IGBMC
| | Sample_contact_address | 1 rue Laurent Fries
| | Sample_contact_city | Illkirch/Strasbourg
| | Sample_contact_zip/postal_code | 67404
| | Sample_contact_country | France
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM697nnn/GSM697016/suppl/GSM697016.CEL.gz
| | Sample_series_id | GSE28133
| | Sample_data_row_count | 54675
| | |
|
GSM697017 | GPL570 |
|
CTR4
|
retina
|
retinal detachment: no
patient identifier: CTR4
total rd duration: 0 weeks
|
retina free of retinal pigment epithelium (RPE)
|
| Sample_geo_accession | GSM697017
| | Sample_status | Public on Mar 06 2012
| | Sample_submission_date | Mar 23 2011
| | Sample_last_update_date | Mar 07 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Retina samples were collected from patients with or without rhegmatogenous retinal detachment (RD)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Retinal tissue was dissected free of retinal pigment epithelium (RPE) and placed in guanidine HCL. The samples were subsequently disrupted and homogenized using a rotor–stator (Polytron PT2100). Total RNA used for microarray studies was purified from a caesium chloride gradient produced by high-speed ultra-centrifugation.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared from the total RNA according to the Affymetrix protocol (Expression Analysis Technical Manual Rev. 2, 2005-2007, Affymetrix)
| | Sample_hyb_protocol | Following fragmentation, cRNA was hybridized on the GeneChip Array and the GeneChips were washed and stained in the Affymetrix Fluidics Station 450 according to the standard Affymetrix protocol (Expression Analysis Technical Manual Rev. 2, 2005-2007, Affymetrix).
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip 3000 7G scanner
| | Sample_data_processing | GCRMA
| | Sample_platform_id | GPL570
| | Sample_contact_name | Wolfgang,,Raffelsberger
| | Sample_contact_email | w.raffelsberger@unistra.fr
| | Sample_contact_laboratory | LBGI
| | Sample_contact_department | DBGS
| | Sample_contact_institute | IGBMC
| | Sample_contact_address | 1 rue Laurent Fries
| | Sample_contact_city | Illkirch/Strasbourg
| | Sample_contact_zip/postal_code | 67404
| | Sample_contact_country | France
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM697nnn/GSM697017/suppl/GSM697017.CEL.gz
| | Sample_series_id | GSE28133
| | Sample_data_row_count | 54675
| | |
|
GSM697018 | GPL570 |
|
CTR5
|
retina
|
retinal detachment: no
patient identifier: CTR5
total rd duration: 0 weeks
|
retina free of retinal pigment epithelium (RPE)
|
| Sample_geo_accession | GSM697018
| | Sample_status | Public on Mar 06 2012
| | Sample_submission_date | Mar 23 2011
| | Sample_last_update_date | Mar 07 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Retina samples were collected from patients with or without rhegmatogenous retinal detachment (RD)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Retinal tissue was dissected free of retinal pigment epithelium (RPE) and placed in guanidine HCL. The samples were subsequently disrupted and homogenized using a rotor–stator (Polytron PT2100). Total RNA used for microarray studies was purified from a caesium chloride gradient produced by high-speed ultra-centrifugation.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared from the total RNA according to the Affymetrix protocol (Expression Analysis Technical Manual Rev. 2, 2005-2007, Affymetrix)
| | Sample_hyb_protocol | Following fragmentation, cRNA was hybridized on the GeneChip Array and the GeneChips were washed and stained in the Affymetrix Fluidics Station 450 according to the standard Affymetrix protocol (Expression Analysis Technical Manual Rev. 2, 2005-2007, Affymetrix).
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip 3000 7G scanner
| | Sample_data_processing | GCRMA
| | Sample_platform_id | GPL570
| | Sample_contact_name | Wolfgang,,Raffelsberger
| | Sample_contact_email | w.raffelsberger@unistra.fr
| | Sample_contact_laboratory | LBGI
| | Sample_contact_department | DBGS
| | Sample_contact_institute | IGBMC
| | Sample_contact_address | 1 rue Laurent Fries
| | Sample_contact_city | Illkirch/Strasbourg
| | Sample_contact_zip/postal_code | 67404
| | Sample_contact_country | France
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM697nnn/GSM697018/suppl/GSM697018.CEL.gz
| | Sample_series_id | GSE28133
| | Sample_data_row_count | 54675
| | |
|
GSM697019 | GPL570 |
|
CTR6
|
retina
|
retinal detachment: no
patient identifier: CTR6
total rd duration: 0 weeks
|
retina free of retinal pigment epithelium (RPE)
|
| Sample_geo_accession | GSM697019
| | Sample_status | Public on Mar 06 2012
| | Sample_submission_date | Mar 23 2011
| | Sample_last_update_date | Mar 07 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Retina samples were collected from patients with or without rhegmatogenous retinal detachment (RD)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Retinal tissue was dissected free of retinal pigment epithelium (RPE) and placed in guanidine HCL. The samples were subsequently disrupted and homogenized using a rotor–stator (Polytron PT2100). Total RNA used for microarray studies was purified from a caesium chloride gradient produced by high-speed ultra-centrifugation.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared from the total RNA according to the Affymetrix protocol (Expression Analysis Technical Manual Rev. 2, 2005-2007, Affymetrix)
| | Sample_hyb_protocol | Following fragmentation, cRNA was hybridized on the GeneChip Array and the GeneChips were washed and stained in the Affymetrix Fluidics Station 450 according to the standard Affymetrix protocol (Expression Analysis Technical Manual Rev. 2, 2005-2007, Affymetrix).
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip 3000 7G scanner
| | Sample_data_processing | GCRMA
| | Sample_platform_id | GPL570
| | Sample_contact_name | Wolfgang,,Raffelsberger
| | Sample_contact_email | w.raffelsberger@unistra.fr
| | Sample_contact_laboratory | LBGI
| | Sample_contact_department | DBGS
| | Sample_contact_institute | IGBMC
| | Sample_contact_address | 1 rue Laurent Fries
| | Sample_contact_city | Illkirch/Strasbourg
| | Sample_contact_zip/postal_code | 67404
| | Sample_contact_country | France
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM697nnn/GSM697019/suppl/GSM697019.CEL.gz
| | Sample_series_id | GSE28133
| | Sample_data_row_count | 54675
| | |
|
GSM697020 | GPL570 |
|
CTR7
|
retina
|
retinal detachment: no
patient identifier: CTR7
total rd duration: 0 weeks
|
retina free of retinal pigment epithelium (RPE)
|
| Sample_geo_accession | GSM697020
| | Sample_status | Public on Mar 06 2012
| | Sample_submission_date | Mar 23 2011
| | Sample_last_update_date | Mar 07 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Retina samples were collected from patients with or without rhegmatogenous retinal detachment (RD)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Retinal tissue was dissected free of retinal pigment epithelium (RPE) and placed in guanidine HCL. The samples were subsequently disrupted and homogenized using a rotor–stator (Polytron PT2100). Total RNA used for microarray studies was purified from a caesium chloride gradient produced by high-speed ultra-centrifugation.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared from the total RNA according to the Affymetrix protocol (Expression Analysis Technical Manual Rev. 2, 2005-2007, Affymetrix)
| | Sample_hyb_protocol | Following fragmentation, cRNA was hybridized on the GeneChip Array and the GeneChips were washed and stained in the Affymetrix Fluidics Station 450 according to the standard Affymetrix protocol (Expression Analysis Technical Manual Rev. 2, 2005-2007, Affymetrix).
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip 3000 7G scanner
| | Sample_data_processing | GCRMA
| | Sample_platform_id | GPL570
| | Sample_contact_name | Wolfgang,,Raffelsberger
| | Sample_contact_email | w.raffelsberger@unistra.fr
| | Sample_contact_laboratory | LBGI
| | Sample_contact_department | DBGS
| | Sample_contact_institute | IGBMC
| | Sample_contact_address | 1 rue Laurent Fries
| | Sample_contact_city | Illkirch/Strasbourg
| | Sample_contact_zip/postal_code | 67404
| | Sample_contact_country | France
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM697nnn/GSM697020/suppl/GSM697020.CEL.gz
| | Sample_series_id | GSE28133
| | Sample_data_row_count | 54675
| | |
|
GSM697021 | GPL570 |
|
CTR8
|
retina
|
retinal detachment: no
patient identifier: CTR8
total rd duration: 0 weeks
|
retina free of retinal pigment epithelium (RPE)
|
| Sample_geo_accession | GSM697021
| | Sample_status | Public on Mar 06 2012
| | Sample_submission_date | Mar 23 2011
| | Sample_last_update_date | Mar 07 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Retina samples were collected from patients with or without rhegmatogenous retinal detachment (RD)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Retinal tissue was dissected free of retinal pigment epithelium (RPE) and placed in guanidine HCL. The samples were subsequently disrupted and homogenized using a rotor–stator (Polytron PT2100). Total RNA used for microarray studies was purified from a caesium chloride gradient produced by high-speed ultra-centrifugation.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared from the total RNA according to the Affymetrix protocol (Expression Analysis Technical Manual Rev. 2, 2005-2007, Affymetrix)
| | Sample_hyb_protocol | Following fragmentation, cRNA was hybridized on the GeneChip Array and the GeneChips were washed and stained in the Affymetrix Fluidics Station 450 according to the standard Affymetrix protocol (Expression Analysis Technical Manual Rev. 2, 2005-2007, Affymetrix).
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip 3000 7G scanner
| | Sample_data_processing | GCRMA
| | Sample_platform_id | GPL570
| | Sample_contact_name | Wolfgang,,Raffelsberger
| | Sample_contact_email | w.raffelsberger@unistra.fr
| | Sample_contact_laboratory | LBGI
| | Sample_contact_department | DBGS
| | Sample_contact_institute | IGBMC
| | Sample_contact_address | 1 rue Laurent Fries
| | Sample_contact_city | Illkirch/Strasbourg
| | Sample_contact_zip/postal_code | 67404
| | Sample_contact_country | France
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM697nnn/GSM697021/suppl/GSM697021.CEL.gz
| | Sample_series_id | GSE28133
| | Sample_data_row_count | 54675
| | |
|
GSM697022 | GPL570 |
|
CTR9
|
retina
|
retinal detachment: no
patient identifier: CTR9
total rd duration: 0 weeks
|
retina free of retinal pigment epithelium (RPE)
|
| Sample_geo_accession | GSM697022
| | Sample_status | Public on Mar 06 2012
| | Sample_submission_date | Mar 23 2011
| | Sample_last_update_date | Mar 07 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Retina samples were collected from patients with or without rhegmatogenous retinal detachment (RD)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Retinal tissue was dissected free of retinal pigment epithelium (RPE) and placed in guanidine HCL. The samples were subsequently disrupted and homogenized using a rotor–stator (Polytron PT2100). Total RNA used for microarray studies was purified from a caesium chloride gradient produced by high-speed ultra-centrifugation.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared from the total RNA according to the Affymetrix protocol (Expression Analysis Technical Manual Rev. 2, 2005-2007, Affymetrix)
| | Sample_hyb_protocol | Following fragmentation, cRNA was hybridized on the GeneChip Array and the GeneChips were washed and stained in the Affymetrix Fluidics Station 450 according to the standard Affymetrix protocol (Expression Analysis Technical Manual Rev. 2, 2005-2007, Affymetrix).
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip 3000 7G scanner
| | Sample_data_processing | GCRMA
| | Sample_platform_id | GPL570
| | Sample_contact_name | Wolfgang,,Raffelsberger
| | Sample_contact_email | w.raffelsberger@unistra.fr
| | Sample_contact_laboratory | LBGI
| | Sample_contact_department | DBGS
| | Sample_contact_institute | IGBMC
| | Sample_contact_address | 1 rue Laurent Fries
| | Sample_contact_city | Illkirch/Strasbourg
| | Sample_contact_zip/postal_code | 67404
| | Sample_contact_country | France
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM697nnn/GSM697022/suppl/GSM697022.CEL.gz
| | Sample_series_id | GSE28133
| | Sample_data_row_count | 54675
| | |
|
GSM697023 | GPL570 |
|
CTR10
|
retina
|
retinal detachment: no
patient identifier: CTR10
total rd duration: 0 weeks
|
retina free of retinal pigment epithelium (RPE)
|
| Sample_geo_accession | GSM697023
| | Sample_status | Public on Mar 06 2012
| | Sample_submission_date | Mar 23 2011
| | Sample_last_update_date | Mar 07 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Retina samples were collected from patients with or without rhegmatogenous retinal detachment (RD)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Retinal tissue was dissected free of retinal pigment epithelium (RPE) and placed in guanidine HCL. The samples were subsequently disrupted and homogenized using a rotor–stator (Polytron PT2100). Total RNA used for microarray studies was purified from a caesium chloride gradient produced by high-speed ultra-centrifugation.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared from the total RNA according to the Affymetrix protocol (Expression Analysis Technical Manual Rev. 2, 2005-2007, Affymetrix)
| | Sample_hyb_protocol | Following fragmentation, cRNA was hybridized on the GeneChip Array and the GeneChips were washed and stained in the Affymetrix Fluidics Station 450 according to the standard Affymetrix protocol (Expression Analysis Technical Manual Rev. 2, 2005-2007, Affymetrix).
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip 3000 7G scanner
| | Sample_data_processing | GCRMA
| | Sample_platform_id | GPL570
| | Sample_contact_name | Wolfgang,,Raffelsberger
| | Sample_contact_email | w.raffelsberger@unistra.fr
| | Sample_contact_laboratory | LBGI
| | Sample_contact_department | DBGS
| | Sample_contact_institute | IGBMC
| | Sample_contact_address | 1 rue Laurent Fries
| | Sample_contact_city | Illkirch/Strasbourg
| | Sample_contact_zip/postal_code | 67404
| | Sample_contact_country | France
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM697nnn/GSM697023/suppl/GSM697023.CEL.gz
| | Sample_series_id | GSE28133
| | Sample_data_row_count | 54675
| | |
|
GSM697024 | GPL570 |
|
CTR11
|
retina
|
retinal detachment: no
patient identifier: CTR11
total rd duration: 0 weeks
|
retina free of retinal pigment epithelium (RPE)
|
| Sample_geo_accession | GSM697024
| | Sample_status | Public on Mar 06 2012
| | Sample_submission_date | Mar 23 2011
| | Sample_last_update_date | Mar 07 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Retina samples were collected from patients with or without rhegmatogenous retinal detachment (RD)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Retinal tissue was dissected free of retinal pigment epithelium (RPE) and placed in guanidine HCL. The samples were subsequently disrupted and homogenized using a rotor–stator (Polytron PT2100). Total RNA used for microarray studies was purified from a caesium chloride gradient produced by high-speed ultra-centrifugation.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared from the total RNA according to the Affymetrix protocol (Expression Analysis Technical Manual Rev. 2, 2005-2007, Affymetrix)
| | Sample_hyb_protocol | Following fragmentation, cRNA was hybridized on the GeneChip Array and the GeneChips were washed and stained in the Affymetrix Fluidics Station 450 according to the standard Affymetrix protocol (Expression Analysis Technical Manual Rev. 2, 2005-2007, Affymetrix).
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip 3000 7G scanner
| | Sample_data_processing | GCRMA
| | Sample_platform_id | GPL570
| | Sample_contact_name | Wolfgang,,Raffelsberger
| | Sample_contact_email | w.raffelsberger@unistra.fr
| | Sample_contact_laboratory | LBGI
| | Sample_contact_department | DBGS
| | Sample_contact_institute | IGBMC
| | Sample_contact_address | 1 rue Laurent Fries
| | Sample_contact_city | Illkirch/Strasbourg
| | Sample_contact_zip/postal_code | 67404
| | Sample_contact_country | France
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM697nnn/GSM697024/suppl/GSM697024.CEL.gz
| | Sample_series_id | GSE28133
| | Sample_data_row_count | 54675
| | |
|
GSM697025 | GPL570 |
|
CTR12
|
retina
|
retinal detachment: no
patient identifier: CTR12
total rd duration: 0 weeks
|
retina free of retinal pigment epithelium (RPE)
|
| Sample_geo_accession | GSM697025
| | Sample_status | Public on Mar 06 2012
| | Sample_submission_date | Mar 23 2011
| | Sample_last_update_date | Mar 07 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Retina samples were collected from patients with or without rhegmatogenous retinal detachment (RD)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Retinal tissue was dissected free of retinal pigment epithelium (RPE) and placed in guanidine HCL. The samples were subsequently disrupted and homogenized using a rotor–stator (Polytron PT2100). Total RNA used for microarray studies was purified from a caesium chloride gradient produced by high-speed ultra-centrifugation.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared from the total RNA according to the Affymetrix protocol (Expression Analysis Technical Manual Rev. 2, 2005-2007, Affymetrix)
| | Sample_hyb_protocol | Following fragmentation, cRNA was hybridized on the GeneChip Array and the GeneChips were washed and stained in the Affymetrix Fluidics Station 450 according to the standard Affymetrix protocol (Expression Analysis Technical Manual Rev. 2, 2005-2007, Affymetrix).
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip 3000 7G scanner
| | Sample_data_processing | GCRMA
| | Sample_platform_id | GPL570
| | Sample_contact_name | Wolfgang,,Raffelsberger
| | Sample_contact_email | w.raffelsberger@unistra.fr
| | Sample_contact_laboratory | LBGI
| | Sample_contact_department | DBGS
| | Sample_contact_institute | IGBMC
| | Sample_contact_address | 1 rue Laurent Fries
| | Sample_contact_city | Illkirch/Strasbourg
| | Sample_contact_zip/postal_code | 67404
| | Sample_contact_country | France
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM697nnn/GSM697025/suppl/GSM697025.CEL.gz
| | Sample_series_id | GSE28133
| | Sample_data_row_count | 54675
| | |
|
GSM697026 | GPL570 |
|
CTR13
|
retina
|
retinal detachment: no
patient identifier: CTR13
total rd duration: 0 weeks
|
retina free of retinal pigment epithelium (RPE)
|
| Sample_geo_accession | GSM697026
| | Sample_status | Public on Mar 06 2012
| | Sample_submission_date | Mar 23 2011
| | Sample_last_update_date | Mar 07 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Retina samples were collected from patients with or without rhegmatogenous retinal detachment (RD)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Retinal tissue was dissected free of retinal pigment epithelium (RPE) and placed in guanidine HCL. The samples were subsequently disrupted and homogenized using a rotor–stator (Polytron PT2100). Total RNA used for microarray studies was purified from a caesium chloride gradient produced by high-speed ultra-centrifugation.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared from the total RNA according to the Affymetrix protocol (Expression Analysis Technical Manual Rev. 2, 2005-2007, Affymetrix)
| | Sample_hyb_protocol | Following fragmentation, cRNA was hybridized on the GeneChip Array and the GeneChips were washed and stained in the Affymetrix Fluidics Station 450 according to the standard Affymetrix protocol (Expression Analysis Technical Manual Rev. 2, 2005-2007, Affymetrix).
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip 3000 7G scanner
| | Sample_data_processing | GCRMA
| | Sample_platform_id | GPL570
| | Sample_contact_name | Wolfgang,,Raffelsberger
| | Sample_contact_email | w.raffelsberger@unistra.fr
| | Sample_contact_laboratory | LBGI
| | Sample_contact_department | DBGS
| | Sample_contact_institute | IGBMC
| | Sample_contact_address | 1 rue Laurent Fries
| | Sample_contact_city | Illkirch/Strasbourg
| | Sample_contact_zip/postal_code | 67404
| | Sample_contact_country | France
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM697nnn/GSM697026/suppl/GSM697026.CEL.gz
| | Sample_series_id | GSE28133
| | Sample_data_row_count | 54675
| | |
|
GSM697027 | GPL570 |
|
CTR14
|
retina
|
retinal detachment: no
patient identifier: CTR14
total rd duration: 0 weeks
|
retina free of retinal pigment epithelium (RPE)
|
| Sample_geo_accession | GSM697027
| | Sample_status | Public on Mar 06 2012
| | Sample_submission_date | Mar 23 2011
| | Sample_last_update_date | Mar 07 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Retina samples were collected from patients with or without rhegmatogenous retinal detachment (RD)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Retinal tissue was dissected free of retinal pigment epithelium (RPE) and placed in guanidine HCL. The samples were subsequently disrupted and homogenized using a rotor–stator (Polytron PT2100). Total RNA used for microarray studies was purified from a caesium chloride gradient produced by high-speed ultra-centrifugation.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared from the total RNA according to the Affymetrix protocol (Expression Analysis Technical Manual Rev. 2, 2005-2007, Affymetrix)
| | Sample_hyb_protocol | Following fragmentation, cRNA was hybridized on the GeneChip Array and the GeneChips were washed and stained in the Affymetrix Fluidics Station 450 according to the standard Affymetrix protocol (Expression Analysis Technical Manual Rev. 2, 2005-2007, Affymetrix).
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip 3000 7G scanner
| | Sample_data_processing | GCRMA
| | Sample_platform_id | GPL570
| | Sample_contact_name | Wolfgang,,Raffelsberger
| | Sample_contact_email | w.raffelsberger@unistra.fr
| | Sample_contact_laboratory | LBGI
| | Sample_contact_department | DBGS
| | Sample_contact_institute | IGBMC
| | Sample_contact_address | 1 rue Laurent Fries
| | Sample_contact_city | Illkirch/Strasbourg
| | Sample_contact_zip/postal_code | 67404
| | Sample_contact_country | France
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM697nnn/GSM697027/suppl/GSM697027.CEL.gz
| | Sample_series_id | GSE28133
| | Sample_data_row_count | 54675
| | |
|
GSM697028 | GPL570 |
|
CTR15
|
retina
|
retinal detachment: no
patient identifier: CTR15
total rd duration: 0 weeks
|
retina free of retinal pigment epithelium (RPE)
|
| Sample_geo_accession | GSM697028
| | Sample_status | Public on Mar 06 2012
| | Sample_submission_date | Mar 23 2011
| | Sample_last_update_date | Mar 07 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Retina samples were collected from patients with or without rhegmatogenous retinal detachment (RD)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Retinal tissue was dissected free of retinal pigment epithelium (RPE) and placed in guanidine HCL. The samples were subsequently disrupted and homogenized using a rotor–stator (Polytron PT2100). Total RNA used for microarray studies was purified from a caesium chloride gradient produced by high-speed ultra-centrifugation.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared from the total RNA according to the Affymetrix protocol (Expression Analysis Technical Manual Rev. 2, 2005-2007, Affymetrix)
| | Sample_hyb_protocol | Following fragmentation, cRNA was hybridized on the GeneChip Array and the GeneChips were washed and stained in the Affymetrix Fluidics Station 450 according to the standard Affymetrix protocol (Expression Analysis Technical Manual Rev. 2, 2005-2007, Affymetrix).
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip 3000 7G scanner
| | Sample_data_processing | GCRMA
| | Sample_platform_id | GPL570
| | Sample_contact_name | Wolfgang,,Raffelsberger
| | Sample_contact_email | w.raffelsberger@unistra.fr
| | Sample_contact_laboratory | LBGI
| | Sample_contact_department | DBGS
| | Sample_contact_institute | IGBMC
| | Sample_contact_address | 1 rue Laurent Fries
| | Sample_contact_city | Illkirch/Strasbourg
| | Sample_contact_zip/postal_code | 67404
| | Sample_contact_country | France
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM697nnn/GSM697028/suppl/GSM697028.CEL.gz
| | Sample_series_id | GSE28133
| | Sample_data_row_count | 54675
| | |
|
GSM697029 | GPL570 |
|
CTR16
|
retina
|
retinal detachment: no
patient identifier: CTR16
total rd duration: 0 weeks
|
retina free of retinal pigment epithelium (RPE)
|
| Sample_geo_accession | GSM697029
| | Sample_status | Public on Mar 06 2012
| | Sample_submission_date | Mar 23 2011
| | Sample_last_update_date | Mar 07 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Retina samples were collected from patients with or without rhegmatogenous retinal detachment (RD)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Retinal tissue was dissected free of retinal pigment epithelium (RPE) and placed in guanidine HCL. The samples were subsequently disrupted and homogenized using a rotor–stator (Polytron PT2100). Total RNA used for microarray studies was purified from a caesium chloride gradient produced by high-speed ultra-centrifugation.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared from the total RNA according to the Affymetrix protocol (Expression Analysis Technical Manual Rev. 2, 2005-2007, Affymetrix)
| | Sample_hyb_protocol | Following fragmentation, cRNA was hybridized on the GeneChip Array and the GeneChips were washed and stained in the Affymetrix Fluidics Station 450 according to the standard Affymetrix protocol (Expression Analysis Technical Manual Rev. 2, 2005-2007, Affymetrix).
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip 3000 7G scanner
| | Sample_data_processing | GCRMA
| | Sample_platform_id | GPL570
| | Sample_contact_name | Wolfgang,,Raffelsberger
| | Sample_contact_email | w.raffelsberger@unistra.fr
| | Sample_contact_laboratory | LBGI
| | Sample_contact_department | DBGS
| | Sample_contact_institute | IGBMC
| | Sample_contact_address | 1 rue Laurent Fries
| | Sample_contact_city | Illkirch/Strasbourg
| | Sample_contact_zip/postal_code | 67404
| | Sample_contact_country | France
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM697nnn/GSM697029/suppl/GSM697029.CEL.gz
| | Sample_series_id | GSE28133
| | Sample_data_row_count | 54675
| | |
|
GSM697030 | GPL570 |
|
CTR17
|
retina
|
retinal detachment: no
patient identifier: CTR17
total rd duration: 0 weeks
|
retina free of retinal pigment epithelium (RPE)
|
| Sample_geo_accession | GSM697030
| | Sample_status | Public on Mar 06 2012
| | Sample_submission_date | Mar 23 2011
| | Sample_last_update_date | Mar 07 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Retina samples were collected from patients with or without rhegmatogenous retinal detachment (RD)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Retinal tissue was dissected free of retinal pigment epithelium (RPE) and placed in guanidine HCL. The samples were subsequently disrupted and homogenized using a rotor–stator (Polytron PT2100). Total RNA used for microarray studies was purified from a caesium chloride gradient produced by high-speed ultra-centrifugation.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared from the total RNA according to the Affymetrix protocol (Expression Analysis Technical Manual Rev. 2, 2005-2007, Affymetrix)
| | Sample_hyb_protocol | Following fragmentation, cRNA was hybridized on the GeneChip Array and the GeneChips were washed and stained in the Affymetrix Fluidics Station 450 according to the standard Affymetrix protocol (Expression Analysis Technical Manual Rev. 2, 2005-2007, Affymetrix).
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip 3000 7G scanner
| | Sample_data_processing | GCRMA
| | Sample_platform_id | GPL570
| | Sample_contact_name | Wolfgang,,Raffelsberger
| | Sample_contact_email | w.raffelsberger@unistra.fr
| | Sample_contact_laboratory | LBGI
| | Sample_contact_department | DBGS
| | Sample_contact_institute | IGBMC
| | Sample_contact_address | 1 rue Laurent Fries
| | Sample_contact_city | Illkirch/Strasbourg
| | Sample_contact_zip/postal_code | 67404
| | Sample_contact_country | France
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM697nnn/GSM697030/suppl/GSM697030.CEL.gz
| | Sample_series_id | GSE28133
| | Sample_data_row_count | 54675
| | |
|
GSM697031 | GPL570 |
|
CTR18
|
retina
|
retinal detachment: no
patient identifier: CTR18
total rd duration: 0 weeks
|
retina free of retinal pigment epithelium (RPE)
|
| Sample_geo_accession | GSM697031
| | Sample_status | Public on Mar 06 2012
| | Sample_submission_date | Mar 23 2011
| | Sample_last_update_date | Mar 07 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Retina samples were collected from patients with or without rhegmatogenous retinal detachment (RD)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Retinal tissue was dissected free of retinal pigment epithelium (RPE) and placed in guanidine HCL. The samples were subsequently disrupted and homogenized using a rotor–stator (Polytron PT2100). Total RNA used for microarray studies was purified from a caesium chloride gradient produced by high-speed ultra-centrifugation.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared from the total RNA according to the Affymetrix protocol (Expression Analysis Technical Manual Rev. 2, 2005-2007, Affymetrix)
| | Sample_hyb_protocol | Following fragmentation, cRNA was hybridized on the GeneChip Array and the GeneChips were washed and stained in the Affymetrix Fluidics Station 450 according to the standard Affymetrix protocol (Expression Analysis Technical Manual Rev. 2, 2005-2007, Affymetrix).
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip 3000 7G scanner
| | Sample_data_processing | GCRMA
| | Sample_platform_id | GPL570
| | Sample_contact_name | Wolfgang,,Raffelsberger
| | Sample_contact_email | w.raffelsberger@unistra.fr
| | Sample_contact_laboratory | LBGI
| | Sample_contact_department | DBGS
| | Sample_contact_institute | IGBMC
| | Sample_contact_address | 1 rue Laurent Fries
| | Sample_contact_city | Illkirch/Strasbourg
| | Sample_contact_zip/postal_code | 67404
| | Sample_contact_country | France
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM697nnn/GSM697031/suppl/GSM697031.CEL.gz
| | Sample_series_id | GSE28133
| | Sample_data_row_count | 54675
| | |
|
GSM697032 | GPL570 |
|
CTR19
|
retina
|
retinal detachment: no
patient identifier: CTR19
total rd duration: 0 weeks
|
retina free of retinal pigment epithelium (RPE)
|
| Sample_geo_accession | GSM697032
| | Sample_status | Public on Mar 06 2012
| | Sample_submission_date | Mar 23 2011
| | Sample_last_update_date | Mar 07 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Retina samples were collected from patients with or without rhegmatogenous retinal detachment (RD)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Retinal tissue was dissected free of retinal pigment epithelium (RPE) and placed in guanidine HCL. The samples were subsequently disrupted and homogenized using a rotor–stator (Polytron PT2100). Total RNA used for microarray studies was purified from a caesium chloride gradient produced by high-speed ultra-centrifugation.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared from the total RNA according to the Affymetrix protocol (Expression Analysis Technical Manual Rev. 2, 2005-2007, Affymetrix)
| | Sample_hyb_protocol | Following fragmentation, cRNA was hybridized on the GeneChip Array and the GeneChips were washed and stained in the Affymetrix Fluidics Station 450 according to the standard Affymetrix protocol (Expression Analysis Technical Manual Rev. 2, 2005-2007, Affymetrix).
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip 3000 7G scanner
| | Sample_data_processing | GCRMA
| | Sample_platform_id | GPL570
| | Sample_contact_name | Wolfgang,,Raffelsberger
| | Sample_contact_email | w.raffelsberger@unistra.fr
| | Sample_contact_laboratory | LBGI
| | Sample_contact_department | DBGS
| | Sample_contact_institute | IGBMC
| | Sample_contact_address | 1 rue Laurent Fries
| | Sample_contact_city | Illkirch/Strasbourg
| | Sample_contact_zip/postal_code | 67404
| | Sample_contact_country | France
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM697nnn/GSM697032/suppl/GSM697032.CEL.gz
| | Sample_series_id | GSE28133
| | Sample_data_row_count | 54675
| | |
|
GSM697033 | GPL570 |
|
RD1
|
retina
|
retinal detachment: yes
patient identifier: RD1
total rd duration: 2 months
|
retina free of retinal pigment epithelium (RPE)
|
| Sample_geo_accession | GSM697033
| | Sample_status | Public on Mar 06 2012
| | Sample_submission_date | Mar 23 2011
| | Sample_last_update_date | Mar 07 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Retina samples were collected from patients with or without rhegmatogenous retinal detachment (RD)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Retinal tissue was dissected free of retinal pigment epithelium (RPE) and placed in guanidine HCL. The samples were subsequently disrupted and homogenized using a rotor–stator (Polytron PT2100). Total RNA used for microarray studies was purified from a caesium chloride gradient produced by high-speed ultra-centrifugation.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared from the total RNA according to the Affymetrix protocol (Expression Analysis Technical Manual Rev. 2, 2005-2007, Affymetrix)
| | Sample_hyb_protocol | Following fragmentation, cRNA was hybridized on the GeneChip Array and the GeneChips were washed and stained in the Affymetrix Fluidics Station 450 according to the standard Affymetrix protocol (Expression Analysis Technical Manual Rev. 2, 2005-2007, Affymetrix).
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip 3000 7G scanner
| | Sample_data_processing | GCRMA
| | Sample_platform_id | GPL570
| | Sample_contact_name | Wolfgang,,Raffelsberger
| | Sample_contact_email | w.raffelsberger@unistra.fr
| | Sample_contact_laboratory | LBGI
| | Sample_contact_department | DBGS
| | Sample_contact_institute | IGBMC
| | Sample_contact_address | 1 rue Laurent Fries
| | Sample_contact_city | Illkirch/Strasbourg
| | Sample_contact_zip/postal_code | 67404
| | Sample_contact_country | France
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM697nnn/GSM697033/suppl/GSM697033.CEL.gz
| | Sample_series_id | GSE28133
| | Sample_data_row_count | 54675
| | |
|
GSM697034 | GPL570 |
|
RD2
|
retina
|
retinal detachment: yes
patient identifier: RD2
total rd duration: 1 year
|
retina free of retinal pigment epithelium (RPE)
|
| Sample_geo_accession | GSM697034
| | Sample_status | Public on Mar 06 2012
| | Sample_submission_date | Mar 23 2011
| | Sample_last_update_date | Mar 07 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Retina samples were collected from patients with or without rhegmatogenous retinal detachment (RD)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Retinal tissue was dissected free of retinal pigment epithelium (RPE) and placed in guanidine HCL. The samples were subsequently disrupted and homogenized using a rotor–stator (Polytron PT2100). Total RNA used for microarray studies was purified from a caesium chloride gradient produced by high-speed ultra-centrifugation.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared from the total RNA according to the Affymetrix protocol (Expression Analysis Technical Manual Rev. 2, 2005-2007, Affymetrix)
| | Sample_hyb_protocol | Following fragmentation, cRNA was hybridized on the GeneChip Array and the GeneChips were washed and stained in the Affymetrix Fluidics Station 450 according to the standard Affymetrix protocol (Expression Analysis Technical Manual Rev. 2, 2005-2007, Affymetrix).
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip 3000 7G scanner
| | Sample_data_processing | GCRMA
| | Sample_platform_id | GPL570
| | Sample_contact_name | Wolfgang,,Raffelsberger
| | Sample_contact_email | w.raffelsberger@unistra.fr
| | Sample_contact_laboratory | LBGI
| | Sample_contact_department | DBGS
| | Sample_contact_institute | IGBMC
| | Sample_contact_address | 1 rue Laurent Fries
| | Sample_contact_city | Illkirch/Strasbourg
| | Sample_contact_zip/postal_code | 67404
| | Sample_contact_country | France
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM697nnn/GSM697034/suppl/GSM697034.CEL.gz
| | Sample_series_id | GSE28133
| | Sample_data_row_count | 54675
| | |
|
GSM697035 | GPL570 |
|
RD3
|
retina
|
retinal detachment: yes
patient identifier: RD3
total rd duration: > 3 months
|
retina free of retinal pigment epithelium (RPE)
|
| Sample_geo_accession | GSM697035
| | Sample_status | Public on Mar 06 2012
| | Sample_submission_date | Mar 23 2011
| | Sample_last_update_date | Mar 07 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Retina samples were collected from patients with or without rhegmatogenous retinal detachment (RD)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Retinal tissue was dissected free of retinal pigment epithelium (RPE) and placed in guanidine HCL. The samples were subsequently disrupted and homogenized using a rotor–stator (Polytron PT2100). Total RNA used for microarray studies was purified from a caesium chloride gradient produced by high-speed ultra-centrifugation.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared from the total RNA according to the Affymetrix protocol (Expression Analysis Technical Manual Rev. 2, 2005-2007, Affymetrix)
| | Sample_hyb_protocol | Following fragmentation, cRNA was hybridized on the GeneChip Array and the GeneChips were washed and stained in the Affymetrix Fluidics Station 450 according to the standard Affymetrix protocol (Expression Analysis Technical Manual Rev. 2, 2005-2007, Affymetrix).
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip 3000 7G scanner
| | Sample_data_processing | GCRMA
| | Sample_platform_id | GPL570
| | Sample_contact_name | Wolfgang,,Raffelsberger
| | Sample_contact_email | w.raffelsberger@unistra.fr
| | Sample_contact_laboratory | LBGI
| | Sample_contact_department | DBGS
| | Sample_contact_institute | IGBMC
| | Sample_contact_address | 1 rue Laurent Fries
| | Sample_contact_city | Illkirch/Strasbourg
| | Sample_contact_zip/postal_code | 67404
| | Sample_contact_country | France
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM697nnn/GSM697035/suppl/GSM697035.CEL.gz
| | Sample_series_id | GSE28133
| | Sample_data_row_count | 54675
| | |
|
GSM697036 | GPL570 |
|
RD4
|
retina
|
retinal detachment: yes
patient identifier: RD4
total rd duration: 6 months
|
retina free of retinal pigment epithelium (RPE)
|
| Sample_geo_accession | GSM697036
| | Sample_status | Public on Mar 06 2012
| | Sample_submission_date | Mar 23 2011
| | Sample_last_update_date | Mar 07 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Retina samples were collected from patients with or without rhegmatogenous retinal detachment (RD)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Retinal tissue was dissected free of retinal pigment epithelium (RPE) and placed in guanidine HCL. The samples were subsequently disrupted and homogenized using a rotor–stator (Polytron PT2100). Total RNA used for microarray studies was purified from a caesium chloride gradient produced by high-speed ultra-centrifugation.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared from the total RNA according to the Affymetrix protocol (Expression Analysis Technical Manual Rev. 2, 2005-2007, Affymetrix)
| | Sample_hyb_protocol | Following fragmentation, cRNA was hybridized on the GeneChip Array and the GeneChips were washed and stained in the Affymetrix Fluidics Station 450 according to the standard Affymetrix protocol (Expression Analysis Technical Manual Rev. 2, 2005-2007, Affymetrix).
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip 3000 7G scanner
| | Sample_data_processing | GCRMA
| | Sample_platform_id | GPL570
| | Sample_contact_name | Wolfgang,,Raffelsberger
| | Sample_contact_email | w.raffelsberger@unistra.fr
| | Sample_contact_laboratory | LBGI
| | Sample_contact_department | DBGS
| | Sample_contact_institute | IGBMC
| | Sample_contact_address | 1 rue Laurent Fries
| | Sample_contact_city | Illkirch/Strasbourg
| | Sample_contact_zip/postal_code | 67404
| | Sample_contact_country | France
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM697nnn/GSM697036/suppl/GSM697036.CEL.gz
| | Sample_series_id | GSE28133
| | Sample_data_row_count | 54675
| | |
|
GSM697037 | GPL570 |
|
RD5
|
retina
|
retinal detachment: yes
patient identifier: RD5
total rd duration: 1 month
|
retina free of retinal pigment epithelium (RPE)
|
| Sample_geo_accession | GSM697037
| | Sample_status | Public on Mar 06 2012
| | Sample_submission_date | Mar 23 2011
| | Sample_last_update_date | Mar 07 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Retina samples were collected from patients with or without rhegmatogenous retinal detachment (RD)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Retinal tissue was dissected free of retinal pigment epithelium (RPE) and placed in guanidine HCL. The samples were subsequently disrupted and homogenized using a rotor–stator (Polytron PT2100). Total RNA used for microarray studies was purified from a caesium chloride gradient produced by high-speed ultra-centrifugation.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared from the total RNA according to the Affymetrix protocol (Expression Analysis Technical Manual Rev. 2, 2005-2007, Affymetrix)
| | Sample_hyb_protocol | Following fragmentation, cRNA was hybridized on the GeneChip Array and the GeneChips were washed and stained in the Affymetrix Fluidics Station 450 according to the standard Affymetrix protocol (Expression Analysis Technical Manual Rev. 2, 2005-2007, Affymetrix).
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip 3000 7G scanner
| | Sample_data_processing | GCRMA
| | Sample_platform_id | GPL570
| | Sample_contact_name | Wolfgang,,Raffelsberger
| | Sample_contact_email | w.raffelsberger@unistra.fr
| | Sample_contact_laboratory | LBGI
| | Sample_contact_department | DBGS
| | Sample_contact_institute | IGBMC
| | Sample_contact_address | 1 rue Laurent Fries
| | Sample_contact_city | Illkirch/Strasbourg
| | Sample_contact_zip/postal_code | 67404
| | Sample_contact_country | France
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM697nnn/GSM697037/suppl/GSM697037.CEL.gz
| | Sample_series_id | GSE28133
| | Sample_data_row_count | 54675
| | |
|
GSM697038 | GPL570 |
|
RD6
|
retina
|
retinal detachment: yes
patient identifier: RD6
total rd duration: 3 weeks
|
retina free of retinal pigment epithelium (RPE)
|
| Sample_geo_accession | GSM697038
| | Sample_status | Public on Mar 06 2012
| | Sample_submission_date | Mar 23 2011
| | Sample_last_update_date | Mar 07 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Retina samples were collected from patients with or without rhegmatogenous retinal detachment (RD)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Retinal tissue was dissected free of retinal pigment epithelium (RPE) and placed in guanidine HCL. The samples were subsequently disrupted and homogenized using a rotor–stator (Polytron PT2100). Total RNA used for microarray studies was purified from a caesium chloride gradient produced by high-speed ultra-centrifugation.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared from the total RNA according to the Affymetrix protocol (Expression Analysis Technical Manual Rev. 2, 2005-2007, Affymetrix)
| | Sample_hyb_protocol | Following fragmentation, cRNA was hybridized on the GeneChip Array and the GeneChips were washed and stained in the Affymetrix Fluidics Station 450 according to the standard Affymetrix protocol (Expression Analysis Technical Manual Rev. 2, 2005-2007, Affymetrix).
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip 3000 7G scanner
| | Sample_data_processing | GCRMA
| | Sample_platform_id | GPL570
| | Sample_contact_name | Wolfgang,,Raffelsberger
| | Sample_contact_email | w.raffelsberger@unistra.fr
| | Sample_contact_laboratory | LBGI
| | Sample_contact_department | DBGS
| | Sample_contact_institute | IGBMC
| | Sample_contact_address | 1 rue Laurent Fries
| | Sample_contact_city | Illkirch/Strasbourg
| | Sample_contact_zip/postal_code | 67404
| | Sample_contact_country | France
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM697nnn/GSM697038/suppl/GSM697038.CEL.gz
| | Sample_series_id | GSE28133
| | Sample_data_row_count | 54675
| | |
|
GSM697039 | GPL570 |
|
RD7
|
retina
|
retinal detachment: yes
patient identifier: RD7
total rd duration: 1 year
|
retina free of retinal pigment epithelium (RPE)
|
| Sample_geo_accession | GSM697039
| | Sample_status | Public on Mar 06 2012
| | Sample_submission_date | Mar 23 2011
| | Sample_last_update_date | Mar 07 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Retina samples were collected from patients with or without rhegmatogenous retinal detachment (RD)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Retinal tissue was dissected free of retinal pigment epithelium (RPE) and placed in guanidine HCL. The samples were subsequently disrupted and homogenized using a rotor–stator (Polytron PT2100). Total RNA used for microarray studies was purified from a caesium chloride gradient produced by high-speed ultra-centrifugation.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared from the total RNA according to the Affymetrix protocol (Expression Analysis Technical Manual Rev. 2, 2005-2007, Affymetrix)
| | Sample_hyb_protocol | Following fragmentation, cRNA was hybridized on the GeneChip Array and the GeneChips were washed and stained in the Affymetrix Fluidics Station 450 according to the standard Affymetrix protocol (Expression Analysis Technical Manual Rev. 2, 2005-2007, Affymetrix).
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip 3000 7G scanner
| | Sample_data_processing | GCRMA
| | Sample_platform_id | GPL570
| | Sample_contact_name | Wolfgang,,Raffelsberger
| | Sample_contact_email | w.raffelsberger@unistra.fr
| | Sample_contact_laboratory | LBGI
| | Sample_contact_department | DBGS
| | Sample_contact_institute | IGBMC
| | Sample_contact_address | 1 rue Laurent Fries
| | Sample_contact_city | Illkirch/Strasbourg
| | Sample_contact_zip/postal_code | 67404
| | Sample_contact_country | France
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM697nnn/GSM697039/suppl/GSM697039.CEL.gz
| | Sample_series_id | GSE28133
| | Sample_data_row_count | 54675
| | |
|
GSM697040 | GPL570 |
|
RD8
|
retina
|
retinal detachment: yes
patient identifier: RD8
total rd duration: 7 months
|
retina free of retinal pigment epithelium (RPE)
|
| Sample_geo_accession | GSM697040
| | Sample_status | Public on Mar 06 2012
| | Sample_submission_date | Mar 23 2011
| | Sample_last_update_date | Mar 07 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Retina samples were collected from patients with or without rhegmatogenous retinal detachment (RD)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Retinal tissue was dissected free of retinal pigment epithelium (RPE) and placed in guanidine HCL. The samples were subsequently disrupted and homogenized using a rotor–stator (Polytron PT2100). Total RNA used for microarray studies was purified from a caesium chloride gradient produced by high-speed ultra-centrifugation.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared from the total RNA according to the Affymetrix protocol (Expression Analysis Technical Manual Rev. 2, 2005-2007, Affymetrix)
| | Sample_hyb_protocol | Following fragmentation, cRNA was hybridized on the GeneChip Array and the GeneChips were washed and stained in the Affymetrix Fluidics Station 450 according to the standard Affymetrix protocol (Expression Analysis Technical Manual Rev. 2, 2005-2007, Affymetrix).
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip 3000 7G scanner
| | Sample_data_processing | GCRMA
| | Sample_platform_id | GPL570
| | Sample_contact_name | Wolfgang,,Raffelsberger
| | Sample_contact_email | w.raffelsberger@unistra.fr
| | Sample_contact_laboratory | LBGI
| | Sample_contact_department | DBGS
| | Sample_contact_institute | IGBMC
| | Sample_contact_address | 1 rue Laurent Fries
| | Sample_contact_city | Illkirch/Strasbourg
| | Sample_contact_zip/postal_code | 67404
| | Sample_contact_country | France
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM697nnn/GSM697040/suppl/GSM697040.CEL.gz
| | Sample_series_id | GSE28133
| | Sample_data_row_count | 54675
| | |
|
GSM697041 | GPL570 |
|
RD9
|
retina
|
retinal detachment: yes
patient identifier: RD9
total rd duration: 2 months
|
retina free of retinal pigment epithelium (RPE)
|
| Sample_geo_accession | GSM697041
| | Sample_status | Public on Mar 06 2012
| | Sample_submission_date | Mar 23 2011
| | Sample_last_update_date | Mar 07 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Retina samples were collected from patients with or without rhegmatogenous retinal detachment (RD)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Retinal tissue was dissected free of retinal pigment epithelium (RPE) and placed in guanidine HCL. The samples were subsequently disrupted and homogenized using a rotor–stator (Polytron PT2100). Total RNA used for microarray studies was purified from a caesium chloride gradient produced by high-speed ultra-centrifugation.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared from the total RNA according to the Affymetrix protocol (Expression Analysis Technical Manual Rev. 2, 2005-2007, Affymetrix)
| | Sample_hyb_protocol | Following fragmentation, cRNA was hybridized on the GeneChip Array and the GeneChips were washed and stained in the Affymetrix Fluidics Station 450 according to the standard Affymetrix protocol (Expression Analysis Technical Manual Rev. 2, 2005-2007, Affymetrix).
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip 3000 7G scanner
| | Sample_data_processing | GCRMA
| | Sample_platform_id | GPL570
| | Sample_contact_name | Wolfgang,,Raffelsberger
| | Sample_contact_email | w.raffelsberger@unistra.fr
| | Sample_contact_laboratory | LBGI
| | Sample_contact_department | DBGS
| | Sample_contact_institute | IGBMC
| | Sample_contact_address | 1 rue Laurent Fries
| | Sample_contact_city | Illkirch/Strasbourg
| | Sample_contact_zip/postal_code | 67404
| | Sample_contact_country | France
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM697nnn/GSM697041/suppl/GSM697041.CEL.gz
| | Sample_series_id | GSE28133
| | Sample_data_row_count | 54675
| | |
|
GSM697042 | GPL570 |
|
RD10
|
retina
|
retinal detachment: yes
patient identifier: RD10
total rd duration: 1 month
|
retina free of retinal pigment epithelium (RPE)
|
| Sample_geo_accession | GSM697042
| | Sample_status | Public on Mar 06 2012
| | Sample_submission_date | Mar 23 2011
| | Sample_last_update_date | Mar 07 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Retina samples were collected from patients with or without rhegmatogenous retinal detachment (RD)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Retinal tissue was dissected free of retinal pigment epithelium (RPE) and placed in guanidine HCL. The samples were subsequently disrupted and homogenized using a rotor–stator (Polytron PT2100). Total RNA used for microarray studies was purified from a caesium chloride gradient produced by high-speed ultra-centrifugation.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared from the total RNA according to the Affymetrix protocol (Expression Analysis Technical Manual Rev. 2, 2005-2007, Affymetrix)
| | Sample_hyb_protocol | Following fragmentation, cRNA was hybridized on the GeneChip Array and the GeneChips were washed and stained in the Affymetrix Fluidics Station 450 according to the standard Affymetrix protocol (Expression Analysis Technical Manual Rev. 2, 2005-2007, Affymetrix).
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip 3000 7G scanner
| | Sample_data_processing | GCRMA
| | Sample_platform_id | GPL570
| | Sample_contact_name | Wolfgang,,Raffelsberger
| | Sample_contact_email | w.raffelsberger@unistra.fr
| | Sample_contact_laboratory | LBGI
| | Sample_contact_department | DBGS
| | Sample_contact_institute | IGBMC
| | Sample_contact_address | 1 rue Laurent Fries
| | Sample_contact_city | Illkirch/Strasbourg
| | Sample_contact_zip/postal_code | 67404
| | Sample_contact_country | France
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM697nnn/GSM697042/suppl/GSM697042.CEL.gz
| | Sample_series_id | GSE28133
| | Sample_data_row_count | 54675
| | |
|
GSM697043 | GPL570 |
|
RD11
|
retina
|
retinal detachment: yes
patient identifier: RD11
total rd duration: 3 months
|
retina free of retinal pigment epithelium (RPE)
|
| Sample_geo_accession | GSM697043
| | Sample_status | Public on Mar 06 2012
| | Sample_submission_date | Mar 23 2011
| | Sample_last_update_date | Mar 07 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Retina samples were collected from patients with or without rhegmatogenous retinal detachment (RD)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Retinal tissue was dissected free of retinal pigment epithelium (RPE) and placed in guanidine HCL. The samples were subsequently disrupted and homogenized using a rotor–stator (Polytron PT2100). Total RNA used for microarray studies was purified from a caesium chloride gradient produced by high-speed ultra-centrifugation.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared from the total RNA according to the Affymetrix protocol (Expression Analysis Technical Manual Rev. 2, 2005-2007, Affymetrix)
| | Sample_hyb_protocol | Following fragmentation, cRNA was hybridized on the GeneChip Array and the GeneChips were washed and stained in the Affymetrix Fluidics Station 450 according to the standard Affymetrix protocol (Expression Analysis Technical Manual Rev. 2, 2005-2007, Affymetrix).
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip 3000 7G scanner
| | Sample_data_processing | GCRMA
| | Sample_platform_id | GPL570
| | Sample_contact_name | Wolfgang,,Raffelsberger
| | Sample_contact_email | w.raffelsberger@unistra.fr
| | Sample_contact_laboratory | LBGI
| | Sample_contact_department | DBGS
| | Sample_contact_institute | IGBMC
| | Sample_contact_address | 1 rue Laurent Fries
| | Sample_contact_city | Illkirch/Strasbourg
| | Sample_contact_zip/postal_code | 67404
| | Sample_contact_country | France
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM697nnn/GSM697043/suppl/GSM697043.CEL.gz
| | Sample_series_id | GSE28133
| | Sample_data_row_count | 54675
| | |
|
GSM697044 | GPL570 |
|
RD12
|
retina
|
retinal detachment: yes
patient identifier: RD12
total rd duration: 3 months
|
retina free of retinal pigment epithelium (RPE)
|
| Sample_geo_accession | GSM697044
| | Sample_status | Public on Mar 06 2012
| | Sample_submission_date | Mar 23 2011
| | Sample_last_update_date | Mar 07 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Retina samples were collected from patients with or without rhegmatogenous retinal detachment (RD)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Retinal tissue was dissected free of retinal pigment epithelium (RPE) and placed in guanidine HCL. The samples were subsequently disrupted and homogenized using a rotor–stator (Polytron PT2100). Total RNA used for microarray studies was purified from a caesium chloride gradient produced by high-speed ultra-centrifugation.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared from the total RNA according to the Affymetrix protocol (Expression Analysis Technical Manual Rev. 2, 2005-2007, Affymetrix)
| | Sample_hyb_protocol | Following fragmentation, cRNA was hybridized on the GeneChip Array and the GeneChips were washed and stained in the Affymetrix Fluidics Station 450 according to the standard Affymetrix protocol (Expression Analysis Technical Manual Rev. 2, 2005-2007, Affymetrix).
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip 3000 7G scanner
| | Sample_data_processing | GCRMA
| | Sample_platform_id | GPL570
| | Sample_contact_name | Wolfgang,,Raffelsberger
| | Sample_contact_email | w.raffelsberger@unistra.fr
| | Sample_contact_laboratory | LBGI
| | Sample_contact_department | DBGS
| | Sample_contact_institute | IGBMC
| | Sample_contact_address | 1 rue Laurent Fries
| | Sample_contact_city | Illkirch/Strasbourg
| | Sample_contact_zip/postal_code | 67404
| | Sample_contact_country | France
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM697nnn/GSM697044/suppl/GSM697044.CEL.gz
| | Sample_series_id | GSE28133
| | Sample_data_row_count | 54675
| | |
|
GSM697045 | GPL570 |
|
RD13
|
retina
|
retinal detachment: yes
patient identifier: RD13
total rd duration: 6 months
|
retina free of retinal pigment epithelium (RPE)
|
| Sample_geo_accession | GSM697045
| | Sample_status | Public on Mar 06 2012
| | Sample_submission_date | Mar 23 2011
| | Sample_last_update_date | Mar 07 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Retina samples were collected from patients with or without rhegmatogenous retinal detachment (RD)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Retinal tissue was dissected free of retinal pigment epithelium (RPE) and placed in guanidine HCL. The samples were subsequently disrupted and homogenized using a rotor–stator (Polytron PT2100). Total RNA used for microarray studies was purified from a caesium chloride gradient produced by high-speed ultra-centrifugation.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared from the total RNA according to the Affymetrix protocol (Expression Analysis Technical Manual Rev. 2, 2005-2007, Affymetrix)
| | Sample_hyb_protocol | Following fragmentation, cRNA was hybridized on the GeneChip Array and the GeneChips were washed and stained in the Affymetrix Fluidics Station 450 according to the standard Affymetrix protocol (Expression Analysis Technical Manual Rev. 2, 2005-2007, Affymetrix).
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip 3000 7G scanner
| | Sample_data_processing | GCRMA
| | Sample_platform_id | GPL570
| | Sample_contact_name | Wolfgang,,Raffelsberger
| | Sample_contact_email | w.raffelsberger@unistra.fr
| | Sample_contact_laboratory | LBGI
| | Sample_contact_department | DBGS
| | Sample_contact_institute | IGBMC
| | Sample_contact_address | 1 rue Laurent Fries
| | Sample_contact_city | Illkirch/Strasbourg
| | Sample_contact_zip/postal_code | 67404
| | Sample_contact_country | France
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM697nnn/GSM697045/suppl/GSM697045.CEL.gz
| | Sample_series_id | GSE28133
| | Sample_data_row_count | 54675
| | |
|
GSM697046 | GPL570 |
|
RD14
|
retina
|
retinal detachment: yes
patient identifier: RD14
total rd duration: 3 months
|
retina free of retinal pigment epithelium (RPE)
|
| Sample_geo_accession | GSM697046
| | Sample_status | Public on Mar 06 2012
| | Sample_submission_date | Mar 23 2011
| | Sample_last_update_date | Mar 07 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Retina samples were collected from patients with or without rhegmatogenous retinal detachment (RD)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Retinal tissue was dissected free of retinal pigment epithelium (RPE) and placed in guanidine HCL. The samples were subsequently disrupted and homogenized using a rotor–stator (Polytron PT2100). Total RNA used for microarray studies was purified from a caesium chloride gradient produced by high-speed ultra-centrifugation.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared from the total RNA according to the Affymetrix protocol (Expression Analysis Technical Manual Rev. 2, 2005-2007, Affymetrix)
| | Sample_hyb_protocol | Following fragmentation, cRNA was hybridized on the GeneChip Array and the GeneChips were washed and stained in the Affymetrix Fluidics Station 450 according to the standard Affymetrix protocol (Expression Analysis Technical Manual Rev. 2, 2005-2007, Affymetrix).
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip 3000 7G scanner
| | Sample_data_processing | GCRMA
| | Sample_platform_id | GPL570
| | Sample_contact_name | Wolfgang,,Raffelsberger
| | Sample_contact_email | w.raffelsberger@unistra.fr
| | Sample_contact_laboratory | LBGI
| | Sample_contact_department | DBGS
| | Sample_contact_institute | IGBMC
| | Sample_contact_address | 1 rue Laurent Fries
| | Sample_contact_city | Illkirch/Strasbourg
| | Sample_contact_zip/postal_code | 67404
| | Sample_contact_country | France
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM697nnn/GSM697046/suppl/GSM697046.CEL.gz
| | Sample_series_id | GSE28133
| | Sample_data_row_count | 54675
| | |
|
GSM697047 | GPL570 |
|
RD15
|
retina
|
retinal detachment: yes
patient identifier: RD15
total rd duration: 2 months
|
retina free of retinal pigment epithelium (RPE)
|
| Sample_geo_accession | GSM697047
| | Sample_status | Public on Mar 06 2012
| | Sample_submission_date | Mar 23 2011
| | Sample_last_update_date | Mar 07 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Retina samples were collected from patients with or without rhegmatogenous retinal detachment (RD)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Retinal tissue was dissected free of retinal pigment epithelium (RPE) and placed in guanidine HCL. The samples were subsequently disrupted and homogenized using a rotor–stator (Polytron PT2100). Total RNA used for microarray studies was purified from a caesium chloride gradient produced by high-speed ultra-centrifugation.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared from the total RNA according to the Affymetrix protocol (Expression Analysis Technical Manual Rev. 2, 2005-2007, Affymetrix)
| | Sample_hyb_protocol | Following fragmentation, cRNA was hybridized on the GeneChip Array and the GeneChips were washed and stained in the Affymetrix Fluidics Station 450 according to the standard Affymetrix protocol (Expression Analysis Technical Manual Rev. 2, 2005-2007, Affymetrix).
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip 3000 7G scanner
| | Sample_data_processing | GCRMA
| | Sample_platform_id | GPL570
| | Sample_contact_name | Wolfgang,,Raffelsberger
| | Sample_contact_email | w.raffelsberger@unistra.fr
| | Sample_contact_laboratory | LBGI
| | Sample_contact_department | DBGS
| | Sample_contact_institute | IGBMC
| | Sample_contact_address | 1 rue Laurent Fries
| | Sample_contact_city | Illkirch/Strasbourg
| | Sample_contact_zip/postal_code | 67404
| | Sample_contact_country | France
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM697nnn/GSM697047/suppl/GSM697047.CEL.gz
| | Sample_series_id | GSE28133
| | Sample_data_row_count | 54675
| | |
|
GSM697048 | GPL570 |
|
RD16
|
retina
|
retinal detachment: yes
patient identifier: RD16
total rd duration: 3 months
|
retina free of retinal pigment epithelium (RPE)
|
| Sample_geo_accession | GSM697048
| | Sample_status | Public on Mar 06 2012
| | Sample_submission_date | Mar 23 2011
| | Sample_last_update_date | Mar 07 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Retina samples were collected from patients with or without rhegmatogenous retinal detachment (RD)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Retinal tissue was dissected free of retinal pigment epithelium (RPE) and placed in guanidine HCL. The samples were subsequently disrupted and homogenized using a rotor–stator (Polytron PT2100). Total RNA used for microarray studies was purified from a caesium chloride gradient produced by high-speed ultra-centrifugation.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared from the total RNA according to the Affymetrix protocol (Expression Analysis Technical Manual Rev. 2, 2005-2007, Affymetrix)
| | Sample_hyb_protocol | Following fragmentation, cRNA was hybridized on the GeneChip Array and the GeneChips were washed and stained in the Affymetrix Fluidics Station 450 according to the standard Affymetrix protocol (Expression Analysis Technical Manual Rev. 2, 2005-2007, Affymetrix).
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip 3000 7G scanner
| | Sample_data_processing | GCRMA
| | Sample_platform_id | GPL570
| | Sample_contact_name | Wolfgang,,Raffelsberger
| | Sample_contact_email | w.raffelsberger@unistra.fr
| | Sample_contact_laboratory | LBGI
| | Sample_contact_department | DBGS
| | Sample_contact_institute | IGBMC
| | Sample_contact_address | 1 rue Laurent Fries
| | Sample_contact_city | Illkirch/Strasbourg
| | Sample_contact_zip/postal_code | 67404
| | Sample_contact_country | France
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM697nnn/GSM697048/suppl/GSM697048.CEL.gz
| | Sample_series_id | GSE28133
| | Sample_data_row_count | 54675
| | |
|
GSM697049 | GPL570 |
|
RD17
|
retina
|
retinal detachment: yes
patient identifier: RD17
total rd duration: 1 week
|
retina free of retinal pigment epithelium (RPE)
|
| Sample_geo_accession | GSM697049
| | Sample_status | Public on Mar 06 2012
| | Sample_submission_date | Mar 23 2011
| | Sample_last_update_date | Mar 07 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Retina samples were collected from patients with or without rhegmatogenous retinal detachment (RD)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Retinal tissue was dissected free of retinal pigment epithelium (RPE) and placed in guanidine HCL. The samples were subsequently disrupted and homogenized using a rotor–stator (Polytron PT2100). Total RNA used for microarray studies was purified from a caesium chloride gradient produced by high-speed ultra-centrifugation.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared from the total RNA according to the Affymetrix protocol (Expression Analysis Technical Manual Rev. 2, 2005-2007, Affymetrix)
| | Sample_hyb_protocol | Following fragmentation, cRNA was hybridized on the GeneChip Array and the GeneChips were washed and stained in the Affymetrix Fluidics Station 450 according to the standard Affymetrix protocol (Expression Analysis Technical Manual Rev. 2, 2005-2007, Affymetrix).
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip 3000 7G scanner
| | Sample_data_processing | GCRMA
| | Sample_platform_id | GPL570
| | Sample_contact_name | Wolfgang,,Raffelsberger
| | Sample_contact_email | w.raffelsberger@unistra.fr
| | Sample_contact_laboratory | LBGI
| | Sample_contact_department | DBGS
| | Sample_contact_institute | IGBMC
| | Sample_contact_address | 1 rue Laurent Fries
| | Sample_contact_city | Illkirch/Strasbourg
| | Sample_contact_zip/postal_code | 67404
| | Sample_contact_country | France
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM697nnn/GSM697049/suppl/GSM697049.CEL.gz
| | Sample_series_id | GSE28133
| | Sample_data_row_count | 54675
| | |
|
GSM697050 | GPL570 |
|
RD18
|
retina
|
retinal detachment: yes
patient identifier: RD18
total rd duration: 1 month
|
retina free of retinal pigment epithelium (RPE)
|
| Sample_geo_accession | GSM697050
| | Sample_status | Public on Mar 06 2012
| | Sample_submission_date | Mar 23 2011
| | Sample_last_update_date | Mar 07 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Retina samples were collected from patients with or without rhegmatogenous retinal detachment (RD)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Retinal tissue was dissected free of retinal pigment epithelium (RPE) and placed in guanidine HCL. The samples were subsequently disrupted and homogenized using a rotor–stator (Polytron PT2100). Total RNA used for microarray studies was purified from a caesium chloride gradient produced by high-speed ultra-centrifugation.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared from the total RNA according to the Affymetrix protocol (Expression Analysis Technical Manual Rev. 2, 2005-2007, Affymetrix)
| | Sample_hyb_protocol | Following fragmentation, cRNA was hybridized on the GeneChip Array and the GeneChips were washed and stained in the Affymetrix Fluidics Station 450 according to the standard Affymetrix protocol (Expression Analysis Technical Manual Rev. 2, 2005-2007, Affymetrix).
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip 3000 7G scanner
| | Sample_data_processing | GCRMA
| | Sample_platform_id | GPL570
| | Sample_contact_name | Wolfgang,,Raffelsberger
| | Sample_contact_email | w.raffelsberger@unistra.fr
| | Sample_contact_laboratory | LBGI
| | Sample_contact_department | DBGS
| | Sample_contact_institute | IGBMC
| | Sample_contact_address | 1 rue Laurent Fries
| | Sample_contact_city | Illkirch/Strasbourg
| | Sample_contact_zip/postal_code | 67404
| | Sample_contact_country | France
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM697nnn/GSM697050/suppl/GSM697050.CEL.gz
| | Sample_series_id | GSE28133
| | Sample_data_row_count | 54675
| | |
|
GSM697051 | GPL570 |
|
RD19
|
retina
|
retinal detachment: yes
patient identifier: RD19
total rd duration: 4 months
|
retina free of retinal pigment epithelium (RPE)
|
| Sample_geo_accession | GSM697051
| | Sample_status | Public on Mar 06 2012
| | Sample_submission_date | Mar 23 2011
| | Sample_last_update_date | Mar 07 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Retina samples were collected from patients with or without rhegmatogenous retinal detachment (RD)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Retinal tissue was dissected free of retinal pigment epithelium (RPE) and placed in guanidine HCL. The samples were subsequently disrupted and homogenized using a rotor–stator (Polytron PT2100). Total RNA used for microarray studies was purified from a caesium chloride gradient produced by high-speed ultra-centrifugation.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared from the total RNA according to the Affymetrix protocol (Expression Analysis Technical Manual Rev. 2, 2005-2007, Affymetrix)
| | Sample_hyb_protocol | Following fragmentation, cRNA was hybridized on the GeneChip Array and the GeneChips were washed and stained in the Affymetrix Fluidics Station 450 according to the standard Affymetrix protocol (Expression Analysis Technical Manual Rev. 2, 2005-2007, Affymetrix).
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip 3000 7G scanner
| | Sample_data_processing | GCRMA
| | Sample_platform_id | GPL570
| | Sample_contact_name | Wolfgang,,Raffelsberger
| | Sample_contact_email | w.raffelsberger@unistra.fr
| | Sample_contact_laboratory | LBGI
| | Sample_contact_department | DBGS
| | Sample_contact_institute | IGBMC
| | Sample_contact_address | 1 rue Laurent Fries
| | Sample_contact_city | Illkirch/Strasbourg
| | Sample_contact_zip/postal_code | 67404
| | Sample_contact_country | France
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM697nnn/GSM697051/suppl/GSM697051.CEL.gz
| | Sample_series_id | GSE28133
| | Sample_data_row_count | 54675
| | |
|
| |
| |
Make groups for comparisons |
(2 groups will be compared at a time) |
|
| Select GSMs and click on "Add groups" |
Enter the group name here: |
|
|
|
