Search results for the GEO ID: GSE28146  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM697308 | GPL570 |
|
Control 976
|
laser capture CA1 tissue gray matter from formalin fixed, paraffin embedded specimens
|
Sex: Male
age: 85 years old
disease status: Control
|
Control; correlation of the expression of each gene was tested with MiniMental Status Examination (MMSE) and neurofibrillary tangle (NFT) scores
|
| Sample_geo_accession | GSM697308
| | Sample_status | Public on Aug 01 2011
| | Sample_submission_date | Mar 24 2011
| | Sample_last_update_date | Jan 25 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RecoverAll Total Nucleic Acid Isolation Kit for FFPE (Ambion)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | 50 ng of extracted purified nucleic acid underwent RNA amplification using WT-Ovation FFPE System (NuGen) followed by FL-Ovation cDNA Biotin Module V2 (NuGen) for labeling and microarray (Affymetrix HGU133 v2) hybridization.
| | Sample_hyb_protocol | Standard Affymetrix
| | Sample_scan_protocol | Standard Affymetrix
| | Sample_data_processing | The data were analyzed with Expression Console version 1.1 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Eric,M,Blalock
| | Sample_contact_email | emblal@uky.edu
| | Sample_contact_phone | 859-323-8033
| | Sample_contact_laboratory | Blalock
| | Sample_contact_department | Molecular and Biomedical Pharmacology
| | Sample_contact_institute | University of Kentucky
| | Sample_contact_address | 800 Rose St.
| | Sample_contact_city | Lexington
| | Sample_contact_state | KY
| | Sample_contact_zip/postal_code | 40475
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM697nnn/GSM697308/suppl/GSM697308.CEL.gz
| | Sample_relation | Affiliated with: GSM21215
| | Sample_series_id | GSE28146
| | Sample_data_row_count | 54675
| | |
|
GSM697309 | GPL570 |
|
Control 1003
|
laser capture CA1 tissue gray matter from formalin fixed, paraffin embedded specimens
|
Sex: Male
age: 80 years old
disease status: Control
|
Control; correlation of the expression of each gene was tested with MiniMental Status Examination (MMSE) and neurofibrillary tangle (NFT) scores
|
| Sample_geo_accession | GSM697309
| | Sample_status | Public on Aug 01 2011
| | Sample_submission_date | Mar 24 2011
| | Sample_last_update_date | Jan 25 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RecoverAll Total Nucleic Acid Isolation Kit for FFPE (Ambion)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | 50 ng of extracted purified nucleic acid underwent RNA amplification using WT-Ovation FFPE System (NuGen) followed by FL-Ovation cDNA Biotin Module V2 (NuGen) for labeling and microarray (Affymetrix HGU133 v2) hybridization.
| | Sample_hyb_protocol | Standard Affymetrix
| | Sample_scan_protocol | Standard Affymetrix
| | Sample_data_processing | The data were analyzed with Expression Console version 1.1 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Eric,M,Blalock
| | Sample_contact_email | emblal@uky.edu
| | Sample_contact_phone | 859-323-8033
| | Sample_contact_laboratory | Blalock
| | Sample_contact_department | Molecular and Biomedical Pharmacology
| | Sample_contact_institute | University of Kentucky
| | Sample_contact_address | 800 Rose St.
| | Sample_contact_city | Lexington
| | Sample_contact_state | KY
| | Sample_contact_zip/postal_code | 40475
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM697nnn/GSM697309/suppl/GSM697309.CEL.gz
| | Sample_relation | Affiliated with: GSM21217
| | Sample_series_id | GSE28146
| | Sample_data_row_count | 54675
| | |
|
GSM697310 | GPL570 |
|
Control 1008
|
laser capture CA1 tissue gray matter from formalin fixed, paraffin embedded specimens
|
Sex: Female
age: 92 years old
disease status: Control
|
Control; correlation of the expression of each gene was tested with MiniMental Status Examination (MMSE) and neurofibrillary tangle (NFT) scores
|
| Sample_geo_accession | GSM697310
| | Sample_status | Public on Aug 01 2011
| | Sample_submission_date | Mar 24 2011
| | Sample_last_update_date | Jan 25 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RecoverAll Total Nucleic Acid Isolation Kit for FFPE (Ambion)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | 50 ng of extracted purified nucleic acid underwent RNA amplification using WT-Ovation FFPE System (NuGen) followed by FL-Ovation cDNA Biotin Module V2 (NuGen) for labeling and microarray (Affymetrix HGU133 v2) hybridization.
| | Sample_hyb_protocol | Standard Affymetrix
| | Sample_scan_protocol | Standard Affymetrix
| | Sample_data_processing | The data were analyzed with Expression Console version 1.1 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Eric,M,Blalock
| | Sample_contact_email | emblal@uky.edu
| | Sample_contact_phone | 859-323-8033
| | Sample_contact_laboratory | Blalock
| | Sample_contact_department | Molecular and Biomedical Pharmacology
| | Sample_contact_institute | University of Kentucky
| | Sample_contact_address | 800 Rose St.
| | Sample_contact_city | Lexington
| | Sample_contact_state | KY
| | Sample_contact_zip/postal_code | 40475
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM697nnn/GSM697310/suppl/GSM697310.CEL.gz
| | Sample_relation | Affiliated with: GSM21218
| | Sample_series_id | GSE28146
| | Sample_data_row_count | 54675
| | |
|
GSM697311 | GPL570 |
|
Control 1012
|
laser capture CA1 tissue gray matter from formalin fixed, paraffin embedded specimens
|
Sex: Male
age: 80 years old
disease status: Control
|
Control; correlation of the expression of each gene was tested with MiniMental Status Examination (MMSE) and neurofibrillary tangle (NFT) scores
|
| Sample_geo_accession | GSM697311
| | Sample_status | Public on Aug 01 2011
| | Sample_submission_date | Mar 24 2011
| | Sample_last_update_date | Jan 25 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RecoverAll Total Nucleic Acid Isolation Kit for FFPE (Ambion)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | 50 ng of extracted purified nucleic acid underwent RNA amplification using WT-Ovation FFPE System (NuGen) followed by FL-Ovation cDNA Biotin Module V2 (NuGen) for labeling and microarray (Affymetrix HGU133 v2) hybridization.
| | Sample_hyb_protocol | Standard Affymetrix
| | Sample_scan_protocol | Standard Affymetrix
| | Sample_data_processing | The data were analyzed with Expression Console version 1.1 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Eric,M,Blalock
| | Sample_contact_email | emblal@uky.edu
| | Sample_contact_phone | 859-323-8033
| | Sample_contact_laboratory | Blalock
| | Sample_contact_department | Molecular and Biomedical Pharmacology
| | Sample_contact_institute | University of Kentucky
| | Sample_contact_address | 800 Rose St.
| | Sample_contact_city | Lexington
| | Sample_contact_state | KY
| | Sample_contact_zip/postal_code | 40475
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM697nnn/GSM697311/suppl/GSM697311.CEL.gz
| | Sample_relation | Affiliated with: GSM21219
| | Sample_series_id | GSE28146
| | Sample_data_row_count | 54675
| | |
|
GSM697312 | GPL570 |
|
Control 1015
|
laser capture CA1 tissue gray matter from formalin fixed, paraffin embedded specimens
|
Sex: Male
age: 75 years old
disease status: Control
|
Control; correlation of the expression of each gene was tested with MiniMental Status Examination (MMSE) and neurofibrillary tangle (NFT) scores
|
| Sample_geo_accession | GSM697312
| | Sample_status | Public on Aug 01 2011
| | Sample_submission_date | Mar 24 2011
| | Sample_last_update_date | Jan 25 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RecoverAll Total Nucleic Acid Isolation Kit for FFPE (Ambion)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | 50 ng of extracted purified nucleic acid underwent RNA amplification using WT-Ovation FFPE System (NuGen) followed by FL-Ovation cDNA Biotin Module V2 (NuGen) for labeling and microarray (Affymetrix HGU133 v2) hybridization.
| | Sample_hyb_protocol | Standard Affymetrix
| | Sample_scan_protocol | Standard Affymetrix
| | Sample_data_processing | The data were analyzed with Expression Console version 1.1 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Eric,M,Blalock
| | Sample_contact_email | emblal@uky.edu
| | Sample_contact_phone | 859-323-8033
| | Sample_contact_laboratory | Blalock
| | Sample_contact_department | Molecular and Biomedical Pharmacology
| | Sample_contact_institute | University of Kentucky
| | Sample_contact_address | 800 Rose St.
| | Sample_contact_city | Lexington
| | Sample_contact_state | KY
| | Sample_contact_zip/postal_code | 40475
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM697nnn/GSM697312/suppl/GSM697312.CEL.gz
| | Sample_relation | Affiliated with: GSM21220
| | Sample_series_id | GSE28146
| | Sample_data_row_count | 54675
| | |
|
GSM697313 | GPL570 |
|
Control 1018
|
laser capture CA1 tissue gray matter from formalin fixed, paraffin embedded specimens
|
Sex: Female
age: 97 years old
disease status: Control
|
Control; correlation of the expression of each gene was tested with MiniMental Status Examination (MMSE) and neurofibrillary tangle (NFT) scores
|
| Sample_geo_accession | GSM697313
| | Sample_status | Public on Aug 01 2011
| | Sample_submission_date | Mar 24 2011
| | Sample_last_update_date | Jan 25 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RecoverAll Total Nucleic Acid Isolation Kit for FFPE (Ambion)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | 50 ng of extracted purified nucleic acid underwent RNA amplification using WT-Ovation FFPE System (NuGen) followed by FL-Ovation cDNA Biotin Module V2 (NuGen) for labeling and microarray (Affymetrix HGU133 v2) hybridization.
| | Sample_hyb_protocol | Standard Affymetrix
| | Sample_scan_protocol | Standard Affymetrix
| | Sample_data_processing | The data were analyzed with Expression Console version 1.1 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Eric,M,Blalock
| | Sample_contact_email | emblal@uky.edu
| | Sample_contact_phone | 859-323-8033
| | Sample_contact_laboratory | Blalock
| | Sample_contact_department | Molecular and Biomedical Pharmacology
| | Sample_contact_institute | University of Kentucky
| | Sample_contact_address | 800 Rose St.
| | Sample_contact_city | Lexington
| | Sample_contact_state | KY
| | Sample_contact_zip/postal_code | 40475
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM697nnn/GSM697313/suppl/GSM697313.CEL.gz
| | Sample_relation | Affiliated with: GSM21221
| | Sample_series_id | GSE28146
| | Sample_data_row_count | 54675
| | |
|
GSM697314 | GPL570 |
|
Control 1030
|
laser capture CA1 tissue gray matter from formalin fixed, paraffin embedded specimens
|
Sex: Male
age: 95 years old
disease status: Control
|
Control; correlation of the expression of each gene was tested with MiniMental Status Examination (MMSE) and neurofibrillary tangle (NFT) scores
|
| Sample_geo_accession | GSM697314
| | Sample_status | Public on Aug 01 2011
| | Sample_submission_date | Mar 24 2011
| | Sample_last_update_date | Jan 25 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RecoverAll Total Nucleic Acid Isolation Kit for FFPE (Ambion)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | 50 ng of extracted purified nucleic acid underwent RNA amplification using WT-Ovation FFPE System (NuGen) followed by FL-Ovation cDNA Biotin Module V2 (NuGen) for labeling and microarray (Affymetrix HGU133 v2) hybridization.
| | Sample_hyb_protocol | Standard Affymetrix
| | Sample_scan_protocol | Standard Affymetrix
| | Sample_data_processing | The data were analyzed with Expression Console version 1.1 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Eric,M,Blalock
| | Sample_contact_email | emblal@uky.edu
| | Sample_contact_phone | 859-323-8033
| | Sample_contact_laboratory | Blalock
| | Sample_contact_department | Molecular and Biomedical Pharmacology
| | Sample_contact_institute | University of Kentucky
| | Sample_contact_address | 800 Rose St.
| | Sample_contact_city | Lexington
| | Sample_contact_state | KY
| | Sample_contact_zip/postal_code | 40475
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM697nnn/GSM697314/suppl/GSM697314.CEL.gz
| | Sample_relation | Affiliated with: GSM21226
| | Sample_series_id | GSE28146
| | Sample_data_row_count | 54675
| | |
|
GSM697315 | GPL570 |
|
Control 1040
|
laser capture CA1 tissue gray matter from formalin fixed, paraffin embedded specimens
|
Sex: Male
age: 87 years old
disease status: Control
|
Control; correlation of the expression of each gene was tested with MiniMental Status Examination (MMSE) and neurofibrillary tangle (NFT) scores
|
| Sample_geo_accession | GSM697315
| | Sample_status | Public on Aug 01 2011
| | Sample_submission_date | Mar 24 2011
| | Sample_last_update_date | Jan 25 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RecoverAll Total Nucleic Acid Isolation Kit for FFPE (Ambion)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | 50 ng of extracted purified nucleic acid underwent RNA amplification using WT-Ovation FFPE System (NuGen) followed by FL-Ovation cDNA Biotin Module V2 (NuGen) for labeling and microarray (Affymetrix HGU133 v2) hybridization.
| | Sample_hyb_protocol | Standard Affymetrix
| | Sample_scan_protocol | Standard Affymetrix
| | Sample_data_processing | The data were analyzed with Expression Console version 1.1 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Eric,M,Blalock
| | Sample_contact_email | emblal@uky.edu
| | Sample_contact_phone | 859-323-8033
| | Sample_contact_laboratory | Blalock
| | Sample_contact_department | Molecular and Biomedical Pharmacology
| | Sample_contact_institute | University of Kentucky
| | Sample_contact_address | 800 Rose St.
| | Sample_contact_city | Lexington
| | Sample_contact_state | KY
| | Sample_contact_zip/postal_code | 40475
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM697nnn/GSM697315/suppl/GSM697315.CEL.gz
| | Sample_relation | Affiliated with: GSM21232
| | Sample_series_id | GSE28146
| | Sample_data_row_count | 54675
| | |
|
GSM697316 | GPL570 |
|
Incipient 715
|
laser capture CA1 tissue gray matter from formalin fixed, paraffin embedded specimens
|
Sex: Female
age: 101 years old
disease status: Incipient
|
Incipient AD; correlation of the expression of each gene was tested with MiniMental Status Examination (MMSE) and neurofibrillary tangle (NFT) scores
|
| Sample_geo_accession | GSM697316
| | Sample_status | Public on Aug 01 2011
| | Sample_submission_date | Mar 24 2011
| | Sample_last_update_date | Jan 25 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RecoverAll Total Nucleic Acid Isolation Kit for FFPE (Ambion)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | 50 ng of extracted purified nucleic acid underwent RNA amplification using WT-Ovation FFPE System (NuGen) followed by FL-Ovation cDNA Biotin Module V2 (NuGen) for labeling and microarray (Affymetrix HGU133 v2) hybridization.
| | Sample_hyb_protocol | Standard Affymetrix
| | Sample_scan_protocol | Standard Affymetrix
| | Sample_data_processing | The data were analyzed with Expression Console version 1.1 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Eric,M,Blalock
| | Sample_contact_email | emblal@uky.edu
| | Sample_contact_phone | 859-323-8033
| | Sample_contact_laboratory | Blalock
| | Sample_contact_department | Molecular and Biomedical Pharmacology
| | Sample_contact_institute | University of Kentucky
| | Sample_contact_address | 800 Rose St.
| | Sample_contact_city | Lexington
| | Sample_contact_state | KY
| | Sample_contact_zip/postal_code | 40475
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM697nnn/GSM697316/suppl/GSM697316.CEL.gz
| | Sample_relation | Affiliated with: GSM21204
| | Sample_series_id | GSE28146
| | Sample_data_row_count | 54675
| | |
|
GSM697317 | GPL570 |
|
Incipient 720
|
laser capture CA1 tissue gray matter from formalin fixed, paraffin embedded specimens
|
Sex: Female
age: 95 years old
disease status: Incipient
|
Incipient AD; correlation of the expression of each gene was tested with MiniMental Status Examination (MMSE) and neurofibrillary tangle (NFT) scores
|
| Sample_geo_accession | GSM697317
| | Sample_status | Public on Aug 01 2011
| | Sample_submission_date | Mar 24 2011
| | Sample_last_update_date | Jan 25 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RecoverAll Total Nucleic Acid Isolation Kit for FFPE (Ambion)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | 50 ng of extracted purified nucleic acid underwent RNA amplification using WT-Ovation FFPE System (NuGen) followed by FL-Ovation cDNA Biotin Module V2 (NuGen) for labeling and microarray (Affymetrix HGU133 v2) hybridization.
| | Sample_hyb_protocol | Standard Affymetrix
| | Sample_scan_protocol | Standard Affymetrix
| | Sample_data_processing | The data were analyzed with Expression Console version 1.1 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Eric,M,Blalock
| | Sample_contact_email | emblal@uky.edu
| | Sample_contact_phone | 859-323-8033
| | Sample_contact_laboratory | Blalock
| | Sample_contact_department | Molecular and Biomedical Pharmacology
| | Sample_contact_institute | University of Kentucky
| | Sample_contact_address | 800 Rose St.
| | Sample_contact_city | Lexington
| | Sample_contact_state | KY
| | Sample_contact_zip/postal_code | 40475
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM697nnn/GSM697317/suppl/GSM697317.CEL.gz
| | Sample_relation | Affiliated with: GSM21205
| | Sample_series_id | GSE28146
| | Sample_data_row_count | 54675
| | |
|
GSM697318 | GPL570 |
|
Incipient 994
|
laser capture CA1 tissue gray matter from formalin fixed, paraffin embedded specimens
|
Sex: Female
age: 83 years old
disease status: Incipient
|
Incipient AD; correlation of the expression of each gene was tested with MiniMental Status Examination (MMSE) and neurofibrillary tangle (NFT) scores
|
| Sample_geo_accession | GSM697318
| | Sample_status | Public on Aug 01 2011
| | Sample_submission_date | Mar 24 2011
| | Sample_last_update_date | Jan 25 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RecoverAll Total Nucleic Acid Isolation Kit for FFPE (Ambion)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | 50 ng of extracted purified nucleic acid underwent RNA amplification using WT-Ovation FFPE System (NuGen) followed by FL-Ovation cDNA Biotin Module V2 (NuGen) for labeling and microarray (Affymetrix HGU133 v2) hybridization.
| | Sample_hyb_protocol | Standard Affymetrix
| | Sample_scan_protocol | Standard Affymetrix
| | Sample_data_processing | The data were analyzed with Expression Console version 1.1 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Eric,M,Blalock
| | Sample_contact_email | emblal@uky.edu
| | Sample_contact_phone | 859-323-8033
| | Sample_contact_laboratory | Blalock
| | Sample_contact_department | Molecular and Biomedical Pharmacology
| | Sample_contact_institute | University of Kentucky
| | Sample_contact_address | 800 Rose St.
| | Sample_contact_city | Lexington
| | Sample_contact_state | KY
| | Sample_contact_zip/postal_code | 40475
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM697nnn/GSM697318/suppl/GSM697318.CEL.gz
| | Sample_relation | Affiliated with: GSM21216
| | Sample_series_id | GSE28146
| | Sample_data_row_count | 54675
| | |
|
GSM697319 | GPL570 |
|
Incipient 1019
|
laser capture CA1 tissue gray matter from formalin fixed, paraffin embedded specimens
|
Sex: Male
age: 88 years old
disease status: Incipient
|
Incipient AD; correlation of the expression of each gene was tested with MiniMental Status Examination (MMSE) and neurofibrillary tangle (NFT) scores
|
| Sample_geo_accession | GSM697319
| | Sample_status | Public on Aug 01 2011
| | Sample_submission_date | Mar 24 2011
| | Sample_last_update_date | Jan 25 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RecoverAll Total Nucleic Acid Isolation Kit for FFPE (Ambion)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | 50 ng of extracted purified nucleic acid underwent RNA amplification using WT-Ovation FFPE System (NuGen) followed by FL-Ovation cDNA Biotin Module V2 (NuGen) for labeling and microarray (Affymetrix HGU133 v2) hybridization.
| | Sample_hyb_protocol | Standard Affymetrix
| | Sample_scan_protocol | Standard Affymetrix
| | Sample_data_processing | The data were analyzed with Expression Console version 1.1 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Eric,M,Blalock
| | Sample_contact_email | emblal@uky.edu
| | Sample_contact_phone | 859-323-8033
| | Sample_contact_laboratory | Blalock
| | Sample_contact_department | Molecular and Biomedical Pharmacology
| | Sample_contact_institute | University of Kentucky
| | Sample_contact_address | 800 Rose St.
| | Sample_contact_city | Lexington
| | Sample_contact_state | KY
| | Sample_contact_zip/postal_code | 40475
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM697nnn/GSM697319/suppl/GSM697319.CEL.gz
| | Sample_relation | Affiliated with: GSM21222
| | Sample_series_id | GSE28146
| | Sample_data_row_count | 54675
| | |
|
GSM697320 | GPL570 |
|
Incipient 1029
|
laser capture CA1 tissue gray matter from formalin fixed, paraffin embedded specimens
|
Sex: Female
age: 91 years old
disease status: Incipient
|
Incipient AD; correlation of the expression of each gene was tested with MiniMental Status Examination (MMSE) and neurofibrillary tangle (NFT) scores
|
| Sample_geo_accession | GSM697320
| | Sample_status | Public on Aug 01 2011
| | Sample_submission_date | Mar 24 2011
| | Sample_last_update_date | Jan 25 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RecoverAll Total Nucleic Acid Isolation Kit for FFPE (Ambion)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | 50 ng of extracted purified nucleic acid underwent RNA amplification using WT-Ovation FFPE System (NuGen) followed by FL-Ovation cDNA Biotin Module V2 (NuGen) for labeling and microarray (Affymetrix HGU133 v2) hybridization.
| | Sample_hyb_protocol | Standard Affymetrix
| | Sample_scan_protocol | Standard Affymetrix
| | Sample_data_processing | The data were analyzed with Expression Console version 1.1 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Eric,M,Blalock
| | Sample_contact_email | emblal@uky.edu
| | Sample_contact_phone | 859-323-8033
| | Sample_contact_laboratory | Blalock
| | Sample_contact_department | Molecular and Biomedical Pharmacology
| | Sample_contact_institute | University of Kentucky
| | Sample_contact_address | 800 Rose St.
| | Sample_contact_city | Lexington
| | Sample_contact_state | KY
| | Sample_contact_zip/postal_code | 40475
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM697nnn/GSM697320/suppl/GSM697320.CEL.gz
| | Sample_relation | Affiliated with: GSM21225
| | Sample_series_id | GSE28146
| | Sample_data_row_count | 54675
| | |
|
GSM697321 | GPL570 |
|
Incipient 1034
|
laser capture CA1 tissue gray matter from formalin fixed, paraffin embedded specimens
|
Sex: Male
age: 88 years old
disease status: Incipient
|
Incipient AD; correlation of the expression of each gene was tested with MiniMental Status Examination (MMSE) and neurofibrillary tangle (NFT) scores
|
| Sample_geo_accession | GSM697321
| | Sample_status | Public on Aug 01 2011
| | Sample_submission_date | Mar 24 2011
| | Sample_last_update_date | Jan 25 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RecoverAll Total Nucleic Acid Isolation Kit for FFPE (Ambion)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | 50 ng of extracted purified nucleic acid underwent RNA amplification using WT-Ovation FFPE System (NuGen) followed by FL-Ovation cDNA Biotin Module V2 (NuGen) for labeling and microarray (Affymetrix HGU133 v2) hybridization.
| | Sample_hyb_protocol | Standard Affymetrix
| | Sample_scan_protocol | Standard Affymetrix
| | Sample_data_processing | The data were analyzed with Expression Console version 1.1 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Eric,M,Blalock
| | Sample_contact_email | emblal@uky.edu
| | Sample_contact_phone | 859-323-8033
| | Sample_contact_laboratory | Blalock
| | Sample_contact_department | Molecular and Biomedical Pharmacology
| | Sample_contact_institute | University of Kentucky
| | Sample_contact_address | 800 Rose St.
| | Sample_contact_city | Lexington
| | Sample_contact_state | KY
| | Sample_contact_zip/postal_code | 40475
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM697nnn/GSM697321/suppl/GSM697321.CEL.gz
| | Sample_relation | Affiliated with: GSM21228
| | Sample_series_id | GSE28146
| | Sample_data_row_count | 54675
| | |
|
GSM697322 | GPL570 |
|
Incipient 1043
|
laser capture CA1 tissue gray matter from formalin fixed, paraffin embedded specimens
|
Sex: Female
age: 97 years old
disease status: Incipient
|
Incipient AD; correlation of the expression of each gene was tested with MiniMental Status Examination (MMSE) and neurofibrillary tangle (NFT) scores
|
| Sample_geo_accession | GSM697322
| | Sample_status | Public on Aug 01 2011
| | Sample_submission_date | Mar 24 2011
| | Sample_last_update_date | Jan 25 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RecoverAll Total Nucleic Acid Isolation Kit for FFPE (Ambion)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | 50 ng of extracted purified nucleic acid underwent RNA amplification using WT-Ovation FFPE System (NuGen) followed by FL-Ovation cDNA Biotin Module V2 (NuGen) for labeling and microarray (Affymetrix HGU133 v2) hybridization.
| | Sample_hyb_protocol | Standard Affymetrix
| | Sample_scan_protocol | Standard Affymetrix
| | Sample_data_processing | The data were analyzed with Expression Console version 1.1 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Eric,M,Blalock
| | Sample_contact_email | emblal@uky.edu
| | Sample_contact_phone | 859-323-8033
| | Sample_contact_laboratory | Blalock
| | Sample_contact_department | Molecular and Biomedical Pharmacology
| | Sample_contact_institute | University of Kentucky
| | Sample_contact_address | 800 Rose St.
| | Sample_contact_city | Lexington
| | Sample_contact_state | KY
| | Sample_contact_zip/postal_code | 40475
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM697nnn/GSM697322/suppl/GSM697322.CEL.gz
| | Sample_relation | Affiliated with: GSM21233
| | Sample_series_id | GSE28146
| | Sample_data_row_count | 54675
| | |
|
GSM697323 | GPL570 |
|
Moderate 826
|
laser capture CA1 tissue gray matter from formalin fixed, paraffin embedded specimens
|
Sex: Female
age: 85 years old
disease status: Moderate
|
Moderate AD; correlation of the expression of each gene was tested with MiniMental Status Examination (MMSE) and neurofibrillary tangle (NFT) scores
|
| Sample_geo_accession | GSM697323
| | Sample_status | Public on Aug 01 2011
| | Sample_submission_date | Mar 24 2011
| | Sample_last_update_date | Jan 25 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RecoverAll Total Nucleic Acid Isolation Kit for FFPE (Ambion)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | 50 ng of extracted purified nucleic acid underwent RNA amplification using WT-Ovation FFPE System (NuGen) followed by FL-Ovation cDNA Biotin Module V2 (NuGen) for labeling and microarray (Affymetrix HGU133 v2) hybridization.
| | Sample_hyb_protocol | Standard Affymetrix
| | Sample_scan_protocol | Standard Affymetrix
| | Sample_data_processing | The data were analyzed with Expression Console version 1.1 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Eric,M,Blalock
| | Sample_contact_email | emblal@uky.edu
| | Sample_contact_phone | 859-323-8033
| | Sample_contact_laboratory | Blalock
| | Sample_contact_department | Molecular and Biomedical Pharmacology
| | Sample_contact_institute | University of Kentucky
| | Sample_contact_address | 800 Rose St.
| | Sample_contact_city | Lexington
| | Sample_contact_state | KY
| | Sample_contact_zip/postal_code | 40475
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM697nnn/GSM697323/suppl/GSM697323.CEL.gz
| | Sample_relation | Affiliated with: GSM21209
| | Sample_series_id | GSE28146
| | Sample_data_row_count | 54675
| | |
|
GSM697324 | GPL570 |
|
Moderate 832
|
laser capture CA1 tissue gray matter from formalin fixed, paraffin embedded specimens
|
Sex: Female
age: 89 years old
disease status: Moderate
|
Moderate AD; correlation of the expression of each gene was tested with MiniMental Status Examination (MMSE) and neurofibrillary tangle (NFT) scores
|
| Sample_geo_accession | GSM697324
| | Sample_status | Public on Aug 01 2011
| | Sample_submission_date | Mar 24 2011
| | Sample_last_update_date | Jan 25 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RecoverAll Total Nucleic Acid Isolation Kit for FFPE (Ambion)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | 50 ng of extracted purified nucleic acid underwent RNA amplification using WT-Ovation FFPE System (NuGen) followed by FL-Ovation cDNA Biotin Module V2 (NuGen) for labeling and microarray (Affymetrix HGU133 v2) hybridization.
| | Sample_hyb_protocol | Standard Affymetrix
| | Sample_scan_protocol | Standard Affymetrix
| | Sample_data_processing | The data were analyzed with Expression Console version 1.1 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Eric,M,Blalock
| | Sample_contact_email | emblal@uky.edu
| | Sample_contact_phone | 859-323-8033
| | Sample_contact_laboratory | Blalock
| | Sample_contact_department | Molecular and Biomedical Pharmacology
| | Sample_contact_institute | University of Kentucky
| | Sample_contact_address | 800 Rose St.
| | Sample_contact_city | Lexington
| | Sample_contact_state | KY
| | Sample_contact_zip/postal_code | 40475
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM697nnn/GSM697324/suppl/GSM697324.CEL.gz
| | Sample_relation | Affiliated with: GSM21210
| | Sample_series_id | GSE28146
| | Sample_data_row_count | 54675
| | |
|
GSM697325 | GPL570 |
|
Moderate 856
|
laser capture CA1 tissue gray matter from formalin fixed, paraffin embedded specimens
|
Sex: Female
age: 83 years old
disease status: Moderate
|
Moderate AD; correlation of the expression of each gene was tested with MiniMental Status Examination (MMSE) and neurofibrillary tangle (NFT) scores
|
| Sample_geo_accession | GSM697325
| | Sample_status | Public on Aug 01 2011
| | Sample_submission_date | Mar 24 2011
| | Sample_last_update_date | Jan 25 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RecoverAll Total Nucleic Acid Isolation Kit for FFPE (Ambion)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | 50 ng of extracted purified nucleic acid underwent RNA amplification using WT-Ovation FFPE System (NuGen) followed by FL-Ovation cDNA Biotin Module V2 (NuGen) for labeling and microarray (Affymetrix HGU133 v2) hybridization.
| | Sample_hyb_protocol | Standard Affymetrix
| | Sample_scan_protocol | Standard Affymetrix
| | Sample_data_processing | The data were analyzed with Expression Console version 1.1 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Eric,M,Blalock
| | Sample_contact_email | emblal@uky.edu
| | Sample_contact_phone | 859-323-8033
| | Sample_contact_laboratory | Blalock
| | Sample_contact_department | Molecular and Biomedical Pharmacology
| | Sample_contact_institute | University of Kentucky
| | Sample_contact_address | 800 Rose St.
| | Sample_contact_city | Lexington
| | Sample_contact_state | KY
| | Sample_contact_zip/postal_code | 40475
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM697nnn/GSM697325/suppl/GSM697325.CEL.gz
| | Sample_relation | Affiliated with: GSM21211
| | Sample_series_id | GSE28146
| | Sample_data_row_count | 54675
| | |
|
GSM697326 | GPL570 |
|
Moderate 965
|
laser capture CA1 tissue gray matter from formalin fixed, paraffin embedded specimens
|
Sex: Female
age: 82 years old
disease status: Moderate
|
Moderate AD; correlation of the expression of each gene was tested with MiniMental Status Examination (MMSE) and neurofibrillary tangle (NFT) scores
|
| Sample_geo_accession | GSM697326
| | Sample_status | Public on Aug 01 2011
| | Sample_submission_date | Mar 24 2011
| | Sample_last_update_date | Jan 25 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RecoverAll Total Nucleic Acid Isolation Kit for FFPE (Ambion)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | 50 ng of extracted purified nucleic acid underwent RNA amplification using WT-Ovation FFPE System (NuGen) followed by FL-Ovation cDNA Biotin Module V2 (NuGen) for labeling and microarray (Affymetrix HGU133 v2) hybridization.
| | Sample_hyb_protocol | Standard Affymetrix
| | Sample_scan_protocol | Standard Affymetrix
| | Sample_data_processing | The data were analyzed with Expression Console version 1.1 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Eric,M,Blalock
| | Sample_contact_email | emblal@uky.edu
| | Sample_contact_phone | 859-323-8033
| | Sample_contact_laboratory | Blalock
| | Sample_contact_department | Molecular and Biomedical Pharmacology
| | Sample_contact_institute | University of Kentucky
| | Sample_contact_address | 800 Rose St.
| | Sample_contact_city | Lexington
| | Sample_contact_state | KY
| | Sample_contact_zip/postal_code | 40475
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM697nnn/GSM697326/suppl/GSM697326.CEL.gz
| | Sample_relation | Affiliated with: GSM21214
| | Sample_series_id | GSE28146
| | Sample_data_row_count | 54675
| | |
|
GSM697327 | GPL570 |
|
Moderate 1020
|
laser capture CA1 tissue gray matter from formalin fixed, paraffin embedded specimens
|
Sex: Female
age: 79 years old
disease status: Moderate
|
Moderate AD; correlation of the expression of each gene was tested with MiniMental Status Examination (MMSE) and neurofibrillary tangle (NFT) scores
|
| Sample_geo_accession | GSM697327
| | Sample_status | Public on Aug 01 2011
| | Sample_submission_date | Mar 24 2011
| | Sample_last_update_date | Jan 25 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RecoverAll Total Nucleic Acid Isolation Kit for FFPE (Ambion)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | 50 ng of extracted purified nucleic acid underwent RNA amplification using WT-Ovation FFPE System (NuGen) followed by FL-Ovation cDNA Biotin Module V2 (NuGen) for labeling and microarray (Affymetrix HGU133 v2) hybridization.
| | Sample_hyb_protocol | Standard Affymetrix
| | Sample_scan_protocol | Standard Affymetrix
| | Sample_data_processing | The data were analyzed with Expression Console version 1.1 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Eric,M,Blalock
| | Sample_contact_email | emblal@uky.edu
| | Sample_contact_phone | 859-323-8033
| | Sample_contact_laboratory | Blalock
| | Sample_contact_department | Molecular and Biomedical Pharmacology
| | Sample_contact_institute | University of Kentucky
| | Sample_contact_address | 800 Rose St.
| | Sample_contact_city | Lexington
| | Sample_contact_state | KY
| | Sample_contact_zip/postal_code | 40475
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM697nnn/GSM697327/suppl/GSM697327.CEL.gz
| | Sample_relation | Affiliated with: GSM21223
| | Sample_series_id | GSE28146
| | Sample_data_row_count | 54675
| | |
|
GSM697328 | GPL570 |
|
Moderate 1025
|
laser capture CA1 tissue gray matter from formalin fixed, paraffin embedded specimens
|
Sex: Male
age: 81 years old
disease status: Moderate
|
Moderate AD; correlation of the expression of each gene was tested with MiniMental Status Examination (MMSE) and neurofibrillary tangle (NFT) scores
|
| Sample_geo_accession | GSM697328
| | Sample_status | Public on Aug 01 2011
| | Sample_submission_date | Mar 24 2011
| | Sample_last_update_date | Jan 25 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RecoverAll Total Nucleic Acid Isolation Kit for FFPE (Ambion)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | 50 ng of extracted purified nucleic acid underwent RNA amplification using WT-Ovation FFPE System (NuGen) followed by FL-Ovation cDNA Biotin Module V2 (NuGen) for labeling and microarray (Affymetrix HGU133 v2) hybridization.
| | Sample_hyb_protocol | Standard Affymetrix
| | Sample_scan_protocol | Standard Affymetrix
| | Sample_data_processing | The data were analyzed with Expression Console version 1.1 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Eric,M,Blalock
| | Sample_contact_email | emblal@uky.edu
| | Sample_contact_phone | 859-323-8033
| | Sample_contact_laboratory | Blalock
| | Sample_contact_department | Molecular and Biomedical Pharmacology
| | Sample_contact_institute | University of Kentucky
| | Sample_contact_address | 800 Rose St.
| | Sample_contact_city | Lexington
| | Sample_contact_state | KY
| | Sample_contact_zip/postal_code | 40475
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM697nnn/GSM697328/suppl/GSM697328.CEL.gz
| | Sample_relation | Affiliated with: GSM21224
| | Sample_series_id | GSE28146
| | Sample_data_row_count | 54675
| | |
|
GSM697329 | GPL570 |
|
Moderate 1031
|
laser capture CA1 tissue gray matter from formalin fixed, paraffin embedded specimens
|
Sex: Female
age: 86 years old
disease status: Moderate
|
Moderate AD; correlation of the expression of each gene was tested with MiniMental Status Examination (MMSE) and neurofibrillary tangle (NFT) scores
|
| Sample_geo_accession | GSM697329
| | Sample_status | Public on Aug 01 2011
| | Sample_submission_date | Mar 24 2011
| | Sample_last_update_date | Jan 25 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RecoverAll Total Nucleic Acid Isolation Kit for FFPE (Ambion)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | 50 ng of extracted purified nucleic acid underwent RNA amplification using WT-Ovation FFPE System (NuGen) followed by FL-Ovation cDNA Biotin Module V2 (NuGen) for labeling and microarray (Affymetrix HGU133 v2) hybridization.
| | Sample_hyb_protocol | Standard Affymetrix
| | Sample_scan_protocol | Standard Affymetrix
| | Sample_data_processing | The data were analyzed with Expression Console version 1.1 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Eric,M,Blalock
| | Sample_contact_email | emblal@uky.edu
| | Sample_contact_phone | 859-323-8033
| | Sample_contact_laboratory | Blalock
| | Sample_contact_department | Molecular and Biomedical Pharmacology
| | Sample_contact_institute | University of Kentucky
| | Sample_contact_address | 800 Rose St.
| | Sample_contact_city | Lexington
| | Sample_contact_state | KY
| | Sample_contact_zip/postal_code | 40475
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM697nnn/GSM697329/suppl/GSM697329.CEL.gz
| | Sample_relation | Affiliated with: GSM21227
| | Sample_series_id | GSE28146
| | Sample_data_row_count | 54675
| | |
|
GSM697330 | GPL570 |
|
Moderate 1037
|
laser capture CA1 tissue gray matter from formalin fixed, paraffin embedded specimens
|
Sex: Male
age: 82 years old
disease status: Moderate
|
Moderate AD; correlation of the expression of each gene was tested with MiniMental Status Examination (MMSE) and neurofibrillary tangle (NFT) scores
|
| Sample_geo_accession | GSM697330
| | Sample_status | Public on Aug 01 2011
| | Sample_submission_date | Mar 24 2011
| | Sample_last_update_date | Jan 25 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RecoverAll Total Nucleic Acid Isolation Kit for FFPE (Ambion)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | 50 ng of extracted purified nucleic acid underwent RNA amplification using WT-Ovation FFPE System (NuGen) followed by FL-Ovation cDNA Biotin Module V2 (NuGen) for labeling and microarray (Affymetrix HGU133 v2) hybridization.
| | Sample_hyb_protocol | Standard Affymetrix
| | Sample_scan_protocol | Standard Affymetrix
| | Sample_data_processing | The data were analyzed with Expression Console version 1.1 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Eric,M,Blalock
| | Sample_contact_email | emblal@uky.edu
| | Sample_contact_phone | 859-323-8033
| | Sample_contact_laboratory | Blalock
| | Sample_contact_department | Molecular and Biomedical Pharmacology
| | Sample_contact_institute | University of Kentucky
| | Sample_contact_address | 800 Rose St.
| | Sample_contact_city | Lexington
| | Sample_contact_state | KY
| | Sample_contact_zip/postal_code | 40475
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM697nnn/GSM697330/suppl/GSM697330.CEL.gz
| | Sample_relation | Affiliated with: GSM21230
| | Sample_series_id | GSE28146
| | Sample_data_row_count | 54675
| | |
|
GSM697331 | GPL570 |
|
Severe 701
|
laser capture CA1 tissue gray matter from formalin fixed, paraffin embedded specimens
|
Sex: Male
age: 85 years old
disease status: Severe
|
Severe AD; correlation of the expression of each gene was tested with MiniMental Status Examination (MMSE) and neurofibrillary tangle (NFT) scores
|
| Sample_geo_accession | GSM697331
| | Sample_status | Public on Aug 01 2011
| | Sample_submission_date | Mar 24 2011
| | Sample_last_update_date | Jan 25 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RecoverAll Total Nucleic Acid Isolation Kit for FFPE (Ambion)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | 50 ng of extracted purified nucleic acid underwent RNA amplification using WT-Ovation FFPE System (NuGen) followed by FL-Ovation cDNA Biotin Module V2 (NuGen) for labeling and microarray (Affymetrix HGU133 v2) hybridization.
| | Sample_hyb_protocol | Standard Affymetrix
| | Sample_scan_protocol | Standard Affymetrix
| | Sample_data_processing | The data were analyzed with Expression Console version 1.1 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Eric,M,Blalock
| | Sample_contact_email | emblal@uky.edu
| | Sample_contact_phone | 859-323-8033
| | Sample_contact_laboratory | Blalock
| | Sample_contact_department | Molecular and Biomedical Pharmacology
| | Sample_contact_institute | University of Kentucky
| | Sample_contact_address | 800 Rose St.
| | Sample_contact_city | Lexington
| | Sample_contact_state | KY
| | Sample_contact_zip/postal_code | 40475
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM697nnn/GSM697331/suppl/GSM697331.CEL.gz
| | Sample_relation | Affiliated with: GSM21203
| | Sample_series_id | GSE28146
| | Sample_data_row_count | 54675
| | |
|
GSM697332 | GPL570 |
|
Severe 723
|
laser capture CA1 tissue gray matter from formalin fixed, paraffin embedded specimens
|
Sex: Female
age: 65 years old
disease status: Severe
|
Severe AD; correlation of the expression of each gene was tested with MiniMental Status Examination (MMSE) and neurofibrillary tangle (NFT) scores
|
| Sample_geo_accession | GSM697332
| | Sample_status | Public on Aug 01 2011
| | Sample_submission_date | Mar 24 2011
| | Sample_last_update_date | Jan 25 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RecoverAll Total Nucleic Acid Isolation Kit for FFPE (Ambion)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | 50 ng of extracted purified nucleic acid underwent RNA amplification using WT-Ovation FFPE System (NuGen) followed by FL-Ovation cDNA Biotin Module V2 (NuGen) for labeling and microarray (Affymetrix HGU133 v2) hybridization.
| | Sample_hyb_protocol | Standard Affymetrix
| | Sample_scan_protocol | Standard Affymetrix
| | Sample_data_processing | The data were analyzed with Expression Console version 1.1 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Eric,M,Blalock
| | Sample_contact_email | emblal@uky.edu
| | Sample_contact_phone | 859-323-8033
| | Sample_contact_laboratory | Blalock
| | Sample_contact_department | Molecular and Biomedical Pharmacology
| | Sample_contact_institute | University of Kentucky
| | Sample_contact_address | 800 Rose St.
| | Sample_contact_city | Lexington
| | Sample_contact_state | KY
| | Sample_contact_zip/postal_code | 40475
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM697nnn/GSM697332/suppl/GSM697332.CEL.gz
| | Sample_relation | Affiliated with: GSM21206
| | Sample_series_id | GSE28146
| | Sample_data_row_count | 54675
| | |
|
GSM697333 | GPL570 |
|
Severe 807
|
laser capture CA1 tissue gray matter from formalin fixed, paraffin embedded specimens
|
Sex: Male
age: 93 years old
disease status: Severe
|
Severe AD; correlation of the expression of each gene was tested with MiniMental Status Examination (MMSE) and neurofibrillary tangle (NFT) scores
|
| Sample_geo_accession | GSM697333
| | Sample_status | Public on Aug 01 2011
| | Sample_submission_date | Mar 24 2011
| | Sample_last_update_date | Jan 25 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RecoverAll Total Nucleic Acid Isolation Kit for FFPE (Ambion)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | 50 ng of extracted purified nucleic acid underwent RNA amplification using WT-Ovation FFPE System (NuGen) followed by FL-Ovation cDNA Biotin Module V2 (NuGen) for labeling and microarray (Affymetrix HGU133 v2) hybridization.
| | Sample_hyb_protocol | Standard Affymetrix
| | Sample_scan_protocol | Standard Affymetrix
| | Sample_data_processing | The data were analyzed with Expression Console version 1.1 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Eric,M,Blalock
| | Sample_contact_email | emblal@uky.edu
| | Sample_contact_phone | 859-323-8033
| | Sample_contact_laboratory | Blalock
| | Sample_contact_department | Molecular and Biomedical Pharmacology
| | Sample_contact_institute | University of Kentucky
| | Sample_contact_address | 800 Rose St.
| | Sample_contact_city | Lexington
| | Sample_contact_state | KY
| | Sample_contact_zip/postal_code | 40475
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM697nnn/GSM697333/suppl/GSM697333.CEL.gz
| | Sample_relation | Affiliated with: GSM21207
| | Sample_series_id | GSE28146
| | Sample_data_row_count | 54675
| | |
|
GSM697334 | GPL570 |
|
Severe 819
|
laser capture CA1 tissue gray matter from formalin fixed, paraffin embedded specimens
|
Sex: Female
age: 79 years old
disease status: Severe
|
Severe AD; correlation of the expression of each gene was tested with MiniMental Status Examination (MMSE) and neurofibrillary tangle (NFT) scores
|
| Sample_geo_accession | GSM697334
| | Sample_status | Public on Aug 01 2011
| | Sample_submission_date | Mar 24 2011
| | Sample_last_update_date | Jan 25 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RecoverAll Total Nucleic Acid Isolation Kit for FFPE (Ambion)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | 50 ng of extracted purified nucleic acid underwent RNA amplification using WT-Ovation FFPE System (NuGen) followed by FL-Ovation cDNA Biotin Module V2 (NuGen) for labeling and microarray (Affymetrix HGU133 v2) hybridization.
| | Sample_hyb_protocol | Standard Affymetrix
| | Sample_scan_protocol | Standard Affymetrix
| | Sample_data_processing | The data were analyzed with Expression Console version 1.1 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Eric,M,Blalock
| | Sample_contact_email | emblal@uky.edu
| | Sample_contact_phone | 859-323-8033
| | Sample_contact_laboratory | Blalock
| | Sample_contact_department | Molecular and Biomedical Pharmacology
| | Sample_contact_institute | University of Kentucky
| | Sample_contact_address | 800 Rose St.
| | Sample_contact_city | Lexington
| | Sample_contact_state | KY
| | Sample_contact_zip/postal_code | 40475
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM697nnn/GSM697334/suppl/GSM697334.CEL.gz
| | Sample_relation | Affiliated with: GSM21208
| | Sample_series_id | GSE28146
| | Sample_data_row_count | 54675
| | |
|
GSM697335 | GPL570 |
|
Severe 867
|
laser capture CA1 tissue gray matter from formalin fixed, paraffin embedded specimens
|
Sex: Female
age: 94 years old
disease status: Severe
|
Severe AD; correlation of the expression of each gene was tested with MiniMental Status Examination (MMSE) and neurofibrillary tangle (NFT) scores
|
| Sample_geo_accession | GSM697335
| | Sample_status | Public on Aug 01 2011
| | Sample_submission_date | Mar 24 2011
| | Sample_last_update_date | Jan 25 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RecoverAll Total Nucleic Acid Isolation Kit for FFPE (Ambion)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | 50 ng of extracted purified nucleic acid underwent RNA amplification using WT-Ovation FFPE System (NuGen) followed by FL-Ovation cDNA Biotin Module V2 (NuGen) for labeling and microarray (Affymetrix HGU133 v2) hybridization.
| | Sample_hyb_protocol | Standard Affymetrix
| | Sample_scan_protocol | Standard Affymetrix
| | Sample_data_processing | The data were analyzed with Expression Console version 1.1 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Eric,M,Blalock
| | Sample_contact_email | emblal@uky.edu
| | Sample_contact_phone | 859-323-8033
| | Sample_contact_laboratory | Blalock
| | Sample_contact_department | Molecular and Biomedical Pharmacology
| | Sample_contact_institute | University of Kentucky
| | Sample_contact_address | 800 Rose St.
| | Sample_contact_city | Lexington
| | Sample_contact_state | KY
| | Sample_contact_zip/postal_code | 40475
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM697nnn/GSM697335/suppl/GSM697335.CEL.gz
| | Sample_relation | Affiliated with: GSM21212
| | Sample_series_id | GSE28146
| | Sample_data_row_count | 54675
| | |
|
GSM697336 | GPL570 |
|
Severe 872
|
laser capture CA1 tissue gray matter from formalin fixed, paraffin embedded specimens
|
Sex: Female
age: 79 years old
disease status: Severe
|
Severe AD; correlation of the expression of each gene was tested with MiniMental Status Examination (MMSE) and neurofibrillary tangle (NFT) scores
|
| Sample_geo_accession | GSM697336
| | Sample_status | Public on Aug 01 2011
| | Sample_submission_date | Mar 24 2011
| | Sample_last_update_date | Jan 25 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RecoverAll Total Nucleic Acid Isolation Kit for FFPE (Ambion)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | 50 ng of extracted purified nucleic acid underwent RNA amplification using WT-Ovation FFPE System (NuGen) followed by FL-Ovation cDNA Biotin Module V2 (NuGen) for labeling and microarray (Affymetrix HGU133 v2) hybridization.
| | Sample_hyb_protocol | Standard Affymetrix
| | Sample_scan_protocol | Standard Affymetrix
| | Sample_data_processing | The data were analyzed with Expression Console version 1.1 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Eric,M,Blalock
| | Sample_contact_email | emblal@uky.edu
| | Sample_contact_phone | 859-323-8033
| | Sample_contact_laboratory | Blalock
| | Sample_contact_department | Molecular and Biomedical Pharmacology
| | Sample_contact_institute | University of Kentucky
| | Sample_contact_address | 800 Rose St.
| | Sample_contact_city | Lexington
| | Sample_contact_state | KY
| | Sample_contact_zip/postal_code | 40475
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM697nnn/GSM697336/suppl/GSM697336.CEL.gz
| | Sample_relation | Affiliated with: GSM21213
| | Sample_series_id | GSE28146
| | Sample_data_row_count | 54675
| | |
|
GSM697337 | GPL570 |
|
Severe 1036
|
laser capture CA1 tissue gray matter from formalin fixed, paraffin embedded specimens
|
Sex: Female
age: 93 years old
disease status: Severe
|
Severe AD; correlation of the expression of each gene was tested with MiniMental Status Examination (MMSE) and neurofibrillary tangle (NFT) scores
|
| Sample_geo_accession | GSM697337
| | Sample_status | Public on Aug 01 2011
| | Sample_submission_date | Mar 24 2011
| | Sample_last_update_date | Jan 25 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RecoverAll Total Nucleic Acid Isolation Kit for FFPE (Ambion)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | 50 ng of extracted purified nucleic acid underwent RNA amplification using WT-Ovation FFPE System (NuGen) followed by FL-Ovation cDNA Biotin Module V2 (NuGen) for labeling and microarray (Affymetrix HGU133 v2) hybridization.
| | Sample_hyb_protocol | Standard Affymetrix
| | Sample_scan_protocol | Standard Affymetrix
| | Sample_data_processing | The data were analyzed with Expression Console version 1.1 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Eric,M,Blalock
| | Sample_contact_email | emblal@uky.edu
| | Sample_contact_phone | 859-323-8033
| | Sample_contact_laboratory | Blalock
| | Sample_contact_department | Molecular and Biomedical Pharmacology
| | Sample_contact_institute | University of Kentucky
| | Sample_contact_address | 800 Rose St.
| | Sample_contact_city | Lexington
| | Sample_contact_state | KY
| | Sample_contact_zip/postal_code | 40475
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM697nnn/GSM697337/suppl/GSM697337.CEL.gz
| | Sample_relation | Affiliated with: GSM21229
| | Sample_series_id | GSE28146
| | Sample_data_row_count | 54675
| | |
|
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Make groups for comparisons |
(2 groups will be compared at a time) |
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| Select GSMs and click on "Add groups" |
Enter the group name here: |
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